Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.015G034800 Populus trichocarpa HOM05D008500 ORTHO05D005299 1.3e-41 172.6 83 100.0
Sabra15G0028800 Salix brachista HOM05D008500 ORTHO05D005299 2.5e-32 141.7 87 83.9
Potri.012G044001 Populus trichocarpa HOM05D008500 ORTHO05D005299 9.7e-29 129.8 86 75.6
Sabra12G0030900 Salix brachista HOM05D008500 ORTHO05D005299 2.8e-28 128.3 83 73.5
FAN08G2086 Fragaria x ananassa HOM05D008500 ORTHO05D005299 2.9e-17 91.7 83 60.2
FvH4_5g17640 Fragaria vesca HOM05D008500 ORTHO05D005299 1.1e-16 89.7 83 59.0
FAN18G0107 Fragaria x ananassa HOM05D008500 ORTHO05D005299 1.1e-16 89.7 83 59.0
FAN04G2293 Fragaria x ananassa HOM05D008500 ORTHO05D005299 1.5e-16 89.4 83 60.2
FAN13G1653 Fragaria x ananassa HOM05D008500 ORTHO05D005299 2.5e-16 88.6 83 59.0
RcHm_v2.0_Chr7g0178031 Rosa chinensis HOM05D008500 ORTHO05D005299 3.2e-16 88.2 83 59.0
Manes.06G003500 Manihot esculenta HOM05D008500 ORTHO05D005299 1.2e-13 79.7 74 63.5
arahy.Tifrunner.gnm1.ann1.J4XL7B Arachis hypogaea HOM05D008500 ORTHO05D005299 2.0e-13 79.0 63 63.5
arahy.Tifrunner.gnm1.ann1.B8M078 Arachis hypogaea HOM05D008500 ORTHO05D005299 2.6e-13 78.6 63 63.5
Lalb_Chr16g0386911 Lupinus albus HOM05D008500 ORTHO05D005299 3.4e-13 78.2 70 58.6
Phvul.004G148400 Phaseolus vulgaris HOM05D008500 ORTHO05D005299 2.2e-12 75.5 65 61.5
Thecc.03G061000 Theobroma cacao HOM05D008500 ORTHO05D005299 2.2e-12 75.5 80 53.8
Glyma.07G104300 Glycine max HOM05D008500 ORTHO05D005299 3.7e-12 74.7 62 62.9
Glyma.09G173300 Glycine max HOM05D008500 ORTHO05D005299 4.8e-12 74.3 65 63.1
Manes.14G157100 Manihot esculenta HOM05D008500 ORTHO05D005299 1.8e-11 72.4 73 63.0
Haze_18904 Corylus avellana HOM05D008500 ORTHO05D005299 2.4e-11 72.0 65 63.1
Haze_18910 Corylus avellana HOM05D008500 ORTHO05D005299 2.4e-11 72.0 65 63.1
TPR.G18382 Trifolium pratense HOM05D008500 ORTHO05D005299 2.4e-11 72.0 65 60.0
Prupe.5G236200 Prunus persica HOM05D008500 ORTHO05D005299 3.1e-11 71.6 74 56.8
MELO3C002147.2 Cucumis melo HOM05D008500 ORTHO05D005299 4.1e-11 71.2 78 53.8
Cfa020630 Carpinus fangiana HOM05D008500 ORTHO05D005299 5.4e-11 70.9 65 63.1
VMungo0464G1302 Vigna mungo HOM05D008500 ORTHO05D005299 1.6e-10 69.3 63 58.7
ClCG04G010470 Citrullus lanatus HOM05D008500 ORTHO05D005299 3.5e-10 68.2 78 51.3
CiPaw.15G146300 Carya illinoinensis HOM05D008500 ORTHO05D005299 4.5e-10 67.8 63 60.3
Medtr6g071040 Medicago truncatula HOM05D008500 ORTHO05D005299 4.5e-10 67.8 72 52.8
TAR371G1237 Trochodendron aralioides HOM05D008500 ORTHO05D005299 4.5e-10 67.8 77 48.1
MBI19_g22070_MAGBIO Magnolia biondii HOM05D008500 ORTHO05D005299 7.7e-10 67.0 75 56.0
PGR044G0774 Punica granatum HOM05D008500 ORTHO05D005299 7.7e-10 67.0 75 50.7
TAR371G0465 Trochodendron aralioides HOM05D008500 ORTHO05D005299 1.0e-09 66.6 77 48.1
CsaV3_1G007310 Cucumis sativus L. HOM05D008500 ORTHO05D005299 1.3e-09 66.2 75 53.3
Duzib205G0189 Durio zibethinus HOM05D008500 ORTHO05D005299 1.3e-09 66.2 65 64.6
Psat1g030680 Pisum sativum HOM05D008500 ORTHO05D005299 2.2e-09 65.5 75 53.3
Lalb_Chr05g0221531 Lupinus albus HOM05D008500 ORTHO05D005299 3.8e-09 64.7 79 45.6
Lalb_Chr14g0370691 Lupinus albus HOM05D008500 ORTHO05D005299 5.0e-09 64.3 65 56.9
Nn4g24351 Nelumbo nucifera HOM05D008500 ORTHO05D005299 6.5e-09 63.9 66 57.6
TAR629G3106 Trochodendron aralioides HOM05D007313 ORTHO05D005299 6.5e-09 63.9 62 59.7
Migut.E00472 Erythranthe guttata HOM05D007313 ORTHO05D005299 1.5e-08 62.8 82 48.8
Eucgr.K02282 Eucalyptus grandis HOM05D008500 ORTHO05D005299 1.5e-08 62.8 82 50.0
Cpa.g.sc3.366 Carica papaya HOM05D008500 ORTHO05D005299 3.2e-08 61.6 70 50.0
Dinv10480 Davidia involucrata HOM05D007313 ORTHO05D005299 4.2e-08 61.2 69 55.1
Gohir.D02G140300 Gossypium hirsutum HOM05D007313 ORTHO05D005299 5.5e-08 60.8 68 52.9
Gorai.005G156500 Gossypium raimondii HOM05D007313 ORTHO05D005299 5.5e-08 60.8 68 52.9
Sed0027993 Sechium edule HOM05D008500 ORTHO05D005299 5.5e-08 60.8 81 45.7
Gohir.A03G114900 Gossypium hirsutum HOM05D007313 ORTHO05D005299 1.2e-07 59.7 85 47.1
CSS0045507 Camellia sinensis var. sinensis HOM05D007313 ORTHO05D005299 2.7e-07 58.5 79 46.8
Atru.chr11.945 Acer truncatum HOM05D007313 ORTHO05D005299 6.1e-07 57.4 80 42.5
Duzib248G0390 Durio zibethinus HOM05D007313 ORTHO05D005299 8.0e-07 57.0 77 46.8
Duzib268G0019 Durio zibethinus HOM05D007313 ORTHO05D005299 1.4e-06 56.2 85 43.5
CSS0007506 Camellia sinensis var. sinensis HOM05D007313 ORTHO05D005299 2.3e-06 55.5 79 46.8
Gohir.A12G270500 Gossypium hirsutum HOM05D008500 ORTHO05D005299 2.3e-06 55.5 67 52.2
Rhsim09G0090300 Rhododendron simsii HOM05D007313 ORTHO05D005299 3.0e-06 55.1 66 47.0
Gohir.A09G173800 Gossypium hirsutum HOM05D037674 ORTHO05D036071 5.2e-06 54.3 80 47.5
Gohir.D09G169500 Gossypium hirsutum HOM05D037674 ORTHO05D036071 6.8e-06 53.9 80 47.5
Gohir.D12G270900 Gossypium hirsutum HOM05D008500 ORTHO05D005299 6.8e-06 53.9 78 50.0
Gorai.006G191000 Gossypium raimondii HOM05D037674 ORTHO05D036071 6.8e-06 53.9 80 47.5


User provided reference genes

Program Settings