Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.015G023400 Populus trichocarpa HOM05D004948 ORTHO05D005824 1.3e-117 426.4 222 100.0
Potri.012G033100 Populus trichocarpa HOM05D004948 ORTHO05D005824 2.5e-100 369.0 227 85.5
Sabra12G0022300 Salix brachista HOM05D004948 ORTHO05D005824 5.7e-84 314.7 196 84.2
Manes.06G156200 Manihot esculenta HOM05D004948 ORTHO05D005824 3.7e-83 312.0 224 74.1
Thecc.03G191700 Theobroma cacao HOM05D004948 ORTHO05D005824 1.8e-82 309.7 224 72.3
Cpa.g.sc3.41 Carica papaya HOM05D004948 ORTHO05D005824 1.6e-81 306.6 227 73.1
QL09p011186 Quercus lobata HOM05D004948 ORTHO05D005824 5.9e-81 304.7 219 75.8
Hma1.2p1_0142F.1_g064080 Hydrangea macrophylla HOM05D004948 ORTHO05D005824 7.7e-81 304.3 230 69.6
Duzib068G0205 Durio zibethinus HOM05D004948 ORTHO05D005824 1.3e-80 303.5 216 72.2
Ciclev10005800m.g Citrus clementina HOM05D004948 ORTHO05D005824 2.2e-80 302.8 222 73.4
CiPaw.06G006800 Carya illinoinensis HOM05D004948 ORTHO05D005824 5.0e-80 301.6 221 72.9
COL.COLO4_04803 Corchorus olitorius HOM05D004948 ORTHO05D005824 6.5e-80 301.2 224 69.2
Actinidia34187 Actinidia chinensis HOM05D004948 ORTHO05D005824 8.5e-80 300.8 226 72.1
CANSAT21G0873 Cannabis sativa HOM05D004948 ORTHO05D005824 8.5e-80 300.8 217 71.4
PGR083G1298 Punica granatum HOM05D004948 ORTHO05D005824 1.5e-79 300.1 222 75.7
Cfa016354 Carpinus fangiana HOM05D004948 ORTHO05D005824 9.4e-79 297.4 220 73.2
Eucgr.A02670 Eucalyptus grandis HOM05D004948 ORTHO05D005824 1.6e-78 296.6 226 71.7
Prupe.2G306200 Prunus persica HOM05D004948 ORTHO05D005824 2.7e-78 295.8 226 71.7
Dinv28347 Davidia involucrata HOM05D004948 ORTHO05D005824 8.0e-78 294.3 218 71.6
Duzib205G0398 Durio zibethinus HOM05D004948 ORTHO05D005824 1.4e-77 293.5 220 70.0
Haze_00103 Corylus avellana HOM05D004948 ORTHO05D005824 1.8e-77 293.1 235 68.5
Atru.chr1.284 Acer truncatum HOM05D004948 ORTHO05D005824 4.0e-77 292.0 226 71.2
Dinv35301 Davidia involucrata HOM05D004948 ORTHO05D005824 6.7e-77 291.2 231 68.0
GSVIVG01028728001 Vitis vinifera HOM05D004948 ORTHO05D005824 8.8e-77 290.8 220 70.9
FAN10G0469 Fragaria x ananassa HOM05D004948 ORTHO05D005824 3.3e-76 288.9 221 70.1
FAN10G0476 Fragaria x ananassa HOM05D004948 ORTHO05D005824 3.3e-76 288.9 221 70.1
FAN01G0333 Fragaria x ananassa HOM05D004948 ORTHO05D005824 4.4e-76 288.5 221 69.7
MSTRG.65 Avicennia marina HOM05D004948 ORTHO05D005824 5.7e-76 288.1 224 68.8
PGR042G1790 Punica granatum HOM05D004948 ORTHO05D005824 5.7e-76 288.1 188 81.9
FAN06G2108 Fragaria x ananassa HOM05D004948 ORTHO05D005824 7.5e-76 287.7 221 69.7
Lj1g0018821 Lotus japonicus HOM05D004948 ORTHO05D005824 9.7e-76 287.3 225 68.4
SalBow2G2244 Salvia bowleyana HOM05D004948 ORTHO05D005824 9.7e-76 287.3 224 69.2
FAN06G4897 Fragaria x ananassa HOM05D004948 ORTHO05D005824 2.8e-75 285.8 221 69.2
SGA_v2.0_scaffold10G05268 Striga asiatica HOM05D004948 ORTHO05D005824 3.7e-75 285.4 220 70.0
vmacro06582 Vaccinium macrocarpon HOM05D004948 ORTHO05D005824 3.7e-75 285.4 233 67.4
ClCG01G000640 Citrullus lanatus HOM05D004948 ORTHO05D005824 8.2e-75 284.3 222 68.5
Gohir.A12G252400 Gossypium hirsutum HOM05D004948 ORTHO05D005824 1.8e-74 283.1 211 68.2
MD07G1283800 Malus domestica HOM05D004948 ORTHO05D005824 5.3e-74 281.6 227 67.0
TAR629G2953 Trochodendron aralioides HOM05D004948 ORTHO05D005824 5.3e-74 281.6 217 67.3
TAR636G2931 Trochodendron aralioides HOM05D004948 ORTHO05D005824 5.3e-74 281.6 225 69.3
Sed0002242 Sechium edule HOM05D004948 ORTHO05D005824 7.0e-74 281.2 220 68.2
CsaV3_5G000730 Cucumis sativus L. HOM05D004948 ORTHO05D005824 1.2e-73 280.4 223 68.6
MBI07_g20438_MAGBIO Magnolia biondii HOM05D004948 ORTHO05D005824 1.2e-73 280.4 222 67.6
Solyc03g007480.3 Solanum lycopersicum HOM05D004948 ORTHO05D005824 2.0e-73 279.6 222 65.8
Sopen03g003430 Solanum pennellii HOM05D004948 ORTHO05D005824 2.0e-73 279.6 222 65.8
PGSC0003DMG400009097 Solanum tuberosum HOM05D004948 ORTHO05D005824 2.0e-73 279.6 203 71.4
CAN.G108.18 Capsicum annuum HOM05D004948 ORTHO05D005824 2.7e-73 279.3 197 71.6
Gorai.008G271400 Gossypium raimondii HOM05D004948 ORTHO05D005824 2.7e-73 279.3 211 67.3
MD01G1214200 Malus domestica HOM05D004948 ORTHO05D005824 2.7e-73 279.3 225 67.6
PGSC0003DMG400028892 Solanum tuberosum HOM05D004948 ORTHO05D005824 3.5e-73 278.9 220 67.7
MELO3C005865.2 Cucumis melo HOM05D004948 ORTHO05D005824 4.5e-73 278.5 222 68.0
FvH4_7g30910 Fragaria vesca HOM05D004948 ORTHO05D005824 4.5e-73 278.5 229 66.8
Oeu037114.1 Olea europaea HOM05D004948 ORTHO05D005824 4.5e-73 278.5 220 70.5
Gohir.D12G253100 Gossypium hirsutum HOM05D004948 ORTHO05D005824 5.9e-73 278.1 211 66.8
Migut.F01058 Erythranthe guttata HOM05D004948 ORTHO05D005824 3.8e-72 275.4 231 65.4
arahy.Tifrunner.gnm1.ann1.LZU7FF Arachis hypogaea HOM05D004948 ORTHO05D005824 6.5e-72 274.6 197 70.6
Rhsim03G0197700 Rhododendron simsii HOM05D004948 ORTHO05D005824 1.5e-71 273.5 220 66.4
RcHm_v2.0_Chr1g0379991 Rosa chinensis HOM05D004948 ORTHO05D005824 3.2e-71 272.3 172 81.4
Peaxi162Scf00904g00460 Petunia axillaris HOM05D004948 ORTHO05D005824 5.5e-71 271.6 180 76.1
Aqoxy5G04108 Aquilegia oxysepala HOM05D004948 ORTHO05D005824 9.4e-71 270.8 223 65.5
Glyma.13G040600 Glycine max HOM05D004948 ORTHO05D005824 1.6e-70 270.0 209 68.9
Solyc06g051820.4 Solanum lycopersicum HOM05D004948 ORTHO05D005824 4.7e-70 268.5 222 66.7
Sc19g0001090 Simmondsia chinensis HOM05D004948 ORTHO05D005824 3.0e-69 265.8 218 65.6
Peaxi162Scf00618g00525 Petunia axillaris HOM05D004948 ORTHO05D005824 1.2e-68 263.8 225 66.2
EL10Ac3g05356 Beta vulgaris HOM05D004948 ORTHO05D005824 1.3e-67 260.4 218 65.1
THA.LOC104800283 Tarenaya hassleriana HOM05D004948 ORTHO05D005824 1.3e-67 260.4 178 75.3
FAN03G1348 Fragaria x ananassa HOM05D004948 ORTHO05D005824 8.3e-67 257.7 221 64.7
Sopen06g017830 Solanum pennellii HOM05D004948 ORTHO05D005824 1.4e-66 256.9 223 64.6
Duzib084G1367 Durio zibethinus HOM05D004948 ORTHO05D005824 2.4e-66 256.1 217 63.6
Manes.14G019200 Manihot esculenta HOM05D004948 ORTHO05D005824 1.6e-65 253.4 185 69.2
TWI23G0483 Tripterygium wilfordii HOM05D004948 ORTHO05D005824 1.6e-65 253.4 171 75.4
AUR62031482 Chenopodium quinoa HOM05D004948 ORTHO05D005824 1.3e-64 250.4 217 60.8
AUR62021051 Chenopodium quinoa HOM05D004948 ORTHO05D005824 1.7e-64 250.0 217 60.8
ATR1132G055 Amborella trichopoda HOM05D004948 ORTHO05D005824 2.2e-64 249.6 183 67.2
Aa31sc29G60 Aethionema arabicum HOM05D004948 ORTHO05D005824 6.5e-64 248.1 178 70.8
DCAR_010636 Daucus carota HOM05D004948 ORTHO05D005824 1.1e-63 247.3 217 62.7
Lalb_Chr04g0263671 Lupinus albus HOM05D004948 ORTHO05D005824 1.5e-63 246.9 201 65.2
ECA233G3864 Erigeron canadensis HOM05D004948 ORTHO05D005824 7.2e-63 244.6 201 65.7
HanXRQChr13g0392981 Helianthus annuus HOM05D004948 ORTHO05D005824 9.5e-63 244.2 222 60.8
Aa31LG5G23580 Aethionema arabicum HOM05D004948 ORTHO05D005824 1.2e-62 243.8 216 61.6
Lsat_1_v5_gn_8_6120 Lactuca sativa HOM05D004948 ORTHO05D005824 2.7e-62 242.7 220 59.5
Sp6g15460 Schrenkiella parvula HOM05D004948 ORTHO05D005824 6.1e-62 241.5 211 61.6
AL8G28010 Arabidopsis lyrata HOM05D004948 ORTHO05D005824 2.3e-61 239.6 207 62.3
Lj1g0003063 Lotus japonicus HOM05D004948 ORTHO05D005824 2.3e-61 239.6 157 79.0
Aa31LG3G9220 Aethionema arabicum HOM05D004948 ORTHO05D005824 4.0e-61 238.8 224 58.0
Carub.0008s1349 Capsella rubella HOM05D004948 ORTHO05D005824 8.8e-61 237.7 210 62.4
Nitab4.5_0001331g0180 Nicotiana tabacum HOM05D004948 ORTHO05D005824 1.2e-60 237.3 191 68.1
Thhalv10014692m.g Eutrema salsugineum HOM05D004948 ORTHO05D005824 3.4e-60 235.7 208 61.5
Nitab4.5_0000472g0200 Nicotiana tabacum HOM05D004948 ORTHO05D005824 3.4e-60 235.7 191 67.5
BcaB05g22031 Brassica carinata HOM05D004948 ORTHO05D005824 4.4e-60 235.3 211 60.2
AT5G53310 Arabidopsis thaliana HOM05D004948 ORTHO05D005824 9.8e-60 234.2 208 60.6
CARHR266350 Cardamine hirsuta HOM05D004948 ORTHO05D005824 1.3e-59 233.8 209 60.8
Ca_16670_v3 Cicer arietinum L. HOM05D004948 ORTHO05D005824 1.3e-59 233.8 178 68.5
BcaC03g14431 Brassica carinata HOM05D004948 ORTHO05D005824 2.2e-59 233.0 207 60.4
C02p18470 Brassica napus HOM05D004948 ORTHO05D005824 2.2e-59 233.0 207 60.4
BolC2t07987H Brassica oleracea HOM05D004948 ORTHO05D005824 2.2e-59 233.0 207 60.4
A02p11140 Brassica napus HOM05D004948 ORTHO05D005824 4.9e-59 231.9 207 59.4
BraA02t06177Z Brassica rapa HOM05D004948 ORTHO05D005824 4.9e-59 231.9 207 59.4
Gohir.D09G178100 Gossypium hirsutum HOM05D004948 ORTHO05D005824 1.1e-58 230.7 162 73.5
Gorai.006G200200 Gossypium raimondii HOM05D004948 ORTHO05D005824 1.1e-58 230.7 162 73.5
Cc02_g01980 Coffea canephora HOM05D004948 ORTHO05D005824 1.4e-58 230.3 155 77.4
CAN.G204.5 Capsicum annuum HOM05D004948 ORTHO05D005824 1.8e-58 229.9 226 58.4
Lj3A912T42 Lonicera japonica HOM05D004948 ORTHO05D005824 2.4e-58 229.6 194 63.9
Hund27721 Selenicereus undatus HOM05D004948 ORTHO05D005824 2.4e-58 229.6 232 58.6
Hund27734 Selenicereus undatus HOM05D004948 ORTHO05D005824 2.4e-58 229.6 232 58.6
arahy.Tifrunner.gnm1.ann1.MD6354 Arachis hypogaea HOM05D004948 ORTHO05D005824 7.0e-58 228.0 166 68.7
Actinidia31860 Actinidia chinensis HOM05D004948 ORTHO05D005824 2.0e-57 226.5 228 58.8
Gohir.A09G183400 Gossypium hirsutum HOM05D004948 ORTHO05D005824 2.7e-57 226.1 162 71.6
Nn2g13651 Nelumbo nucifera HOM05D004948 ORTHO05D005824 2.7e-57 226.1 157 73.9
Glyma.04G238900 Glycine max HOM05D004948 ORTHO05D005824 2.9e-56 222.6 157 74.5
Psat0s97g0080 Pisum sativum HOM05D004948 ORTHO05D005824 5.0e-56 221.9 157 73.2
Os01g0621700 Oryza sativa ssp. japonica HOM05D004948 ORTHO05D005824 3.3e-55 219.2 172 63.4
TPR.G33862 Trifolium pratense HOM05D004948 ORTHO05D005824 8.0e-54 214.5 183 61.2
DCAR_014528 Daucus carota HOM05D000121 ORTHO05D005824 1.8e-53 213.4 161 66.5
Glyma.06G124800 Glycine max HOM05D004948 ORTHO05D005824 2.3e-53 213.0 157 72.0
arahy.Tifrunner.gnm1.ann1.NIM4HJ Arachis hypogaea HOM05D004948 ORTHO05D005824 2.0e-52 209.9 157 66.9
Phvul.009G135700 Phaseolus vulgaris HOM05D004948 ORTHO05D005824 2.6e-52 209.5 157 70.1
HPP92_024433 Vanilla planifolia HOM05D004948 ORTHO05D005824 2.6e-52 209.5 155 65.8
Lalb_Chr08g0240671 Lupinus albus HOM05D004948 ORTHO05D005824 4.4e-52 208.8 157 70.7
unitig_747.g21853 Utricularia gibba HOM05D004948 ORTHO05D005824 9.8e-52 207.6 222 55.9
DCAR_008996 Daucus carota HOM05D002473 ORTHO05D005824 1.7e-51 206.8 174 63.2
Medtr3g090670 Medicago truncatula HOM05D004948 ORTHO05D005824 4.9e-51 205.3 147 70.7
TWI39G0355 Tripterygium wilfordii HOM05D004948 ORTHO05D005824 1.4e-50 203.8 137 76.6
VMungo1309G3087 Vigna mungo HOM05D004948 ORTHO05D005824 4.1e-50 202.2 179 59.8
arahy.Tifrunner.gnm1.ann1.AMC2P5 Arachis hypogaea HOM05D004948 ORTHO05D005824 2.0e-49 199.9 172 61.0
CDE04G0161 Ceratophyllum demersum HOM05D004948 ORTHO05D005824 2.0e-49 199.9 176 57.4
Zm00001eb432120 Zea mays HOM05D004948 ORTHO05D005824 5.9e-49 198.4 144 70.1
Ah.07g206090 Amaranthus hybridus HOM05D004948 ORTHO05D005824 1.1e-47 194.1 136 72.8
Nitab4.5_0002176g0030 Nicotiana tabacum HOM05D004948 ORTHO05D005824 3.3e-47 192.6 125 80.0
Actinidia08617 Actinidia chinensis HOM05D004948 ORTHO05D005824 9.5e-47 191.0 144 72.9
SHI54648 Sapria himalayana HOM05D004948 ORTHO05D005824 1.6e-46 190.3 177 59.9
SHI54754 Sapria himalayana HOM05D004948 ORTHO05D005824 1.6e-46 190.3 177 59.9
CSS0002011 Camellia sinensis var. sinensis HOM05D004948 ORTHO05D005824 1.8e-45 186.8 118 80.5
Mapoly0143s0028 Marchantia polymorpha HOM05D004948 ORTHO05D005824 1.5e-44 183.7 181 53.6
Pp3c8_900 Physcomitrium patens HOM05D004948 ORTHO05D005824 4.1e-42 175.6 183 50.8
SMO361G0401 Selaginella moellendorffii HOM05D004948 ORTHO05D005824 9.2e-42 174.5 192 49.5
AagrBONN_evm.TU.Sc2ySwM_362.1882 Anthoceros agrestis HOM05D004948 ORTHO05D005824 6.6e-40 168.3 192 47.4
SEGI_09652 Sequoiadendron giganteum HOM05D004948 ORTHO05D005824 8.6e-40 167.9 137 63.5
CSS0008262 Camellia sinensis var. sinensis HOM05D004948 ORTHO05D005824 4.3e-39 165.6 105 80.0
CSS0025713 Camellia sinensis var. sinensis HOM05D004948 ORTHO05D005824 4.3e-39 165.6 105 80.0
BcaC04g20470 Brassica carinata HOM05D004948 ORTHO05D005824 1.4e-37 160.6 216 46.3
BolC9t57186H Brassica oleracea HOM05D004948 ORTHO05D005824 6.8e-37 158.3 216 46.3
C09p43150 Brassica napus HOM05D004948 ORTHO05D005824 6.4e-35 151.8 206 46.1
CBR_g39340 Chara braunii HOM05D004948 ORTHO05D005824 3.2e-34 149.4 160 48.8
Lj1P1012T60 Lonicera japonica HOM05D004948 ORTHO05D005824 5.1e-32 142.1 108 69.4
BcaB08g35692 Brassica carinata HOM05D004948 ORTHO05D005824 1.9e-23 113.6 87 64.4
Lalb_Chr23g0271431 Lupinus albus HOM05D004948 ORTHO05D005824 4.3e-23 112.5 157 47.1
MCO05G504 Micromonas commoda HOM05D004948 ORTHO05D005824 4.6e-17 92.4 207 30.9
CSS0022164 Camellia sinensis var. sinensis HOM05D004948 ORTHO05D005824 4.5e-12 75.9 103 48.5
CSS0011379 Camellia sinensis var. sinensis HOM05D004948 ORTHO05D005824 7.6e-12 75.1 103 45.6
CSS0007759 Camellia sinensis var. sinensis HOM05D004948 ORTHO05D005824 1.1e-07 61.2 82 41.5


User provided reference genes

Program Settings