Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.015G014800 Populus trichocarpa HOM05D003962 ORTHO05D004714 0.0e+00 1889.4 1140 100.0
Sabra15G0011900 Salix brachista HOM05D003962 ORTHO05D004714 0.0e+00 1519.2 1148 80.3
Potri.012G013800 Populus trichocarpa HOM05D003962 ORTHO05D004714 0.0e+00 1462.2 1161 79.6
Sabra12G0018000 Salix brachista HOM05D003962 ORTHO05D004714 0.0e+00 1307.7 1209 70.2
Manes.14G006600 Manihot esculenta HOM05D003962 ORTHO05D004714 4.4e-257 892.1 998 62.2
Manes.06G159800 Manihot esculenta HOM05D003962 ORTHO05D004714 8.7e-237 824.7 1209 54.0
Thecc.03G196300 Theobroma cacao HOM05D003962 ORTHO05D004714 4.3e-236 822.4 1226 53.8
COL.COLO4_11264 Corchorus olitorius HOM05D003962 ORTHO05D004714 8.4e-232 808.1 1179 49.3
Duzib068G0757 Durio zibethinus HOM05D003962 ORTHO05D004714 1.4e-231 807.4 1212 54.3
Atru.chr1.164 Acer truncatum HOM05D003962 ORTHO05D004714 7.9e-230 801.6 1245 54.2
TWI23G0430 Tripterygium wilfordii HOM05D003962 ORTHO05D004714 1.8e-229 800.4 1243 50.7
TWI14G0330 Tripterygium wilfordii HOM05D003962 ORTHO05D004714 1.9e-228 797.0 1226 49.9
Ciclev10004179m.g Citrus clementina HOM05D003962 ORTHO05D004714 2.4e-226 790.0 1227 51.1
Duzib205G1946 Durio zibethinus HOM05D003962 ORTHO05D004714 2.0e-225 786.9 1234 51.9
Cpa.g.sc3.71 Carica papaya HOM05D003962 ORTHO05D004714 3.5e-222 776.2 1263 52.6
Duzib084G0525 Durio zibethinus HOM05D003962 ORTHO05D004714 4.6e-222 775.8 1218 50.2
TWI39G0414 Tripterygium wilfordii HOM05D003962 ORTHO05D004714 5.1e-221 772.3 1247 50.6
Gorai.007G015000 Gossypium raimondii HOM05D003962 ORTHO05D004714 3.8e-216 756.1 1221 53.6
Cfa016250 Carpinus fangiana HOM05D003962 ORTHO05D004714 5.0e-216 755.7 1236 48.9
CiPaw.05G251700 Carya illinoinensis HOM05D003962 ORTHO05D004714 2.1e-214 750.4 1236 50.7
Gohir.D11G014600 Gossypium hirsutum HOM05D003962 ORTHO05D004714 1.1e-210 738.0 1223 53.1
Haze_00190 Corylus avellana HOM05D003962 ORTHO05D004714 8.2e-203 711.8 1033 48.4
MD01G1219900 Malus domestica HOM05D003962 ORTHO05D004714 3.1e-202 709.9 1261 51.5
Duzib205G1416 Durio zibethinus HOM05D003962 ORTHO05D004714 3.5e-201 706.4 822 52.7
QL09p009481 Quercus lobata HOM05D003962 ORTHO05D004714 1.3e-200 704.5 1305 47.5
Gohir.A11G014500 Gossypium hirsutum HOM05D003962 ORTHO05D004714 1.7e-200 704.1 1220 52.4
Gohir.A11G014600 Gossypium hirsutum HOM05D003962 ORTHO05D004714 3.2e-199 699.9 1219 50.4
Gohir.D11G014700 Gossypium hirsutum HOM05D003962 ORTHO05D004714 2.3e-197 693.7 1219 50.8
CiPaw.06G010000 Carya illinoinensis HOM05D003962 ORTHO05D004714 1.4e-189 667.9 1241 46.7
Prupe.2G311300 Prunus persica HOM05D003962 ORTHO05D004714 1.2e-188 664.8 1252 49.8
CANSAT21G2091 Cannabis sativa HOM05D003962 ORTHO05D004714 6.3e-187 659.1 1260 48.4
FvH4_7g31740 Fragaria vesca HOM05D003962 ORTHO05D004714 2.5e-183 647.1 1248 47.2
MD07G1290200 Malus domestica HOM05D003962 ORTHO05D004714 1.0e-181 641.7 823 48.5
FAN06G4230 Fragaria x ananassa HOM05D003962 ORTHO05D004714 4.1e-178 629.8 1248 46.7
FAN06G4429 Fragaria x ananassa HOM05D003962 ORTHO05D004714 7.0e-178 629.0 1248 46.8
RcHm_v2.0_Chr1g0380961 Rosa chinensis HOM05D003962 ORTHO05D004714 2.8e-174 617.1 1244 47.8
FAN10G2253 Fragaria x ananassa HOM05D003962 ORTHO05D004714 2.8e-171 607.1 1247 44.7
VMungo1309G1284 Vigna mungo HOM05D003962 ORTHO05D004714 7.0e-170 602.4 1236 43.4
Eucgr.A01465 Eucalyptus grandis HOM05D003962 ORTHO05D004714 4.6e-169 599.7 1205 44.0
FAN10G3613 Fragaria x ananassa HOM05D003962 ORTHO05D004714 1.0e-168 598.6 1243 44.6
Glyma.06G127600 Glycine max HOM05D003962 ORTHO05D004714 4.0e-165 586.6 1189 46.2
FAN03G1461 Fragaria x ananassa HOM05D003962 ORTHO05D004714 2.0e-164 584.3 1240 47.1
Glyma.04G236700 Glycine max HOM05D003962 ORTHO05D004714 3.4e-164 583.6 1195 44.3
FAN01G0781 Fragaria x ananassa HOM05D003962 ORTHO05D004714 2.9e-163 580.5 1243 46.1
Ca_16697_v3 Cicer arietinum L. HOM05D003962 ORTHO05D004714 7.0e-162 575.9 1173 43.1
Phvul.009G053600 Phaseolus vulgaris HOM05D003962 ORTHO05D004714 5.6e-159 566.2 816 44.5
GSVIVG01038709001 Vitis vinifera HOM05D003962 ORTHO05D004714 1.2e-156 558.5 1291 41.6
TAR374G0911 Trochodendron aralioides HOM05D003962 ORTHO05D004714 7.5e-156 555.8 1214 39.3
Medtr3g091280 Medicago truncatula HOM05D003962 ORTHO05D004714 7.8e-153 545.8 1194 44.3
Psat5g078120 Pisum sativum HOM05D003962 ORTHO05D004714 8.9e-149 532.3 1192 43.1
PGR042G1008 Punica granatum HOM05D003962 ORTHO05D004714 3.4e-148 530.4 1208 39.9
Nn1g01866 Nelumbo nucifera HOM05D003962 ORTHO05D004714 1.3e-147 528.5 1282 40.2
Lalb_Chr08g0240331 Lupinus albus HOM05D003962 ORTHO05D004714 2.3e-144 517.7 1209 40.9
Lj1g0008504 Lotus japonicus HOM05D003962 ORTHO05D004714 6.6e-144 516.2 1096 45.9
Lalb_Chr23g0271551 Lupinus albus HOM05D003962 ORTHO05D004714 6.8e-141 506.1 1036 43.3
THA.LOC104800296 Tarenaya hassleriana HOM05D003962 ORTHO05D004714 5.4e-138 496.5 1057 44.2
ClCG01G000470 Citrullus lanatus HOM05D003962 ORTHO05D004714 2.3e-136 491.1 1266 40.9
CSS0043367 Camellia sinensis var. sinensis HOM05D003962 ORTHO05D004714 1.3e-134 485.3 817 41.5
Gorai.007G015100 Gossypium raimondii HOM05D003962 ORTHO05D004714 1.5e-132 478.4 491 55.6
Lalb_Chr11g0066791 Lupinus albus HOM05D003962 ORTHO05D004714 2.6e-132 477.6 1041 43.0
Dinv37529 Davidia involucrata HOM05D003962 ORTHO05D004714 2.9e-131 474.2 836 40.2
TAR629G3347 Trochodendron aralioides HOM05D003962 ORTHO05D004714 7.1e-130 469.5 801 40.2
Sed0023111 Sechium edule HOM05D003962 ORTHO05D004714 2.7e-129 467.6 1241 36.4
TAR636G0021 Trochodendron aralioides HOM05D003962 ORTHO05D004714 1.1e-127 462.2 1272 37.5
TPR.G17287 Trifolium pratense HOM05D003962 ORTHO05D004714 6.2e-126 456.4 1209 38.8
CsaV3_5G000540 Cucumis sativus L. HOM05D003962 ORTHO05D004714 9.0e-125 452.6 1282 36.6
MELO3C005882.2 Cucumis melo HOM05D003962 ORTHO05D004714 1.2e-124 452.2 1310 36.0
AT5G53440 Arabidopsis thaliana HOM05D003962 ORTHO05D004714 1.3e-123 448.7 1268 37.8
arahy.Tifrunner.gnm1.ann1.JYM9I0 Arachis hypogaea HOM05D003962 ORTHO05D004714 2.2e-123 448.0 1201 38.1
arahy.Tifrunner.gnm1.ann1.897SEY Arachis hypogaea HOM05D003962 ORTHO05D004714 1.9e-122 444.9 1202 40.1
Nn3g19007 Nelumbo nucifera HOM05D003962 ORTHO05D004714 6.0e-121 439.9 1235 36.4
Sed0017272 Sechium edule HOM05D003962 ORTHO05D004714 1.3e-120 438.7 813 37.5
AL8G28140 Arabidopsis lyrata HOM05D003962 ORTHO05D004714 3.0e-120 437.6 1259 39.5
Sp6g15570 Schrenkiella parvula HOM05D003962 ORTHO05D004714 8.7e-120 436.0 1246 40.6
EL10Ac3g05299 Beta vulgaris HOM05D003962 ORTHO05D004714 1.7e-115 421.8 1266 35.6
CSS0016674 Camellia sinensis var. sinensis HOM05D003962 ORTHO05D004714 1.4e-114 418.7 726 40.4
Cc08_g16110 Coffea canephora HOM05D003962 ORTHO05D004714 9.3e-114 416.0 810 37.5
TAR375G1139 Trochodendron aralioides HOM05D003962 ORTHO05D004714 2.3e-112 411.4 707 39.6
AUR62006109 Chenopodium quinoa HOM05D003962 ORTHO05D004714 8.7e-112 409.5 1187 37.3
Aqoxy7G00097 Aquilegia oxysepala HOM05D003962 ORTHO05D004714 8.2e-110 402.9 1306 34.8
GSVIVG01019537001 Vitis vinifera HOM05D003962 ORTHO05D005685 1.1e-109 402.5 1103 38.8
THA.LOC104825141 Tarenaya hassleriana HOM05D003962 ORTHO05D004714 1.2e-108 399.1 955 40.8
Carub.0008s1360 Capsella rubella HOM05D003962 ORTHO05D004714 1.1e-106 392.5 1257 38.9
Hma1.2p1_0359F.1_g135210 Hydrangea macrophylla HOM05D003962 ORTHO05D004714 1.4e-106 392.1 821 37.0
Actinidia22731 Actinidia chinensis HOM05D003962 ORTHO05D004714 1.9e-106 391.7 773 39.3
Dinv38828 Davidia involucrata HOM05D003962 ORTHO05D004714 3.2e-106 391.0 1261 34.4
Thhalv10012484m.g Eutrema salsugineum HOM05D003962 ORTHO05D004714 3.2e-106 391.0 1089 41.7
DCAR_029893 Daucus carota HOM05D003962 ORTHO05D004714 3.0e-104 384.4 811 37.9
CARHR266560 Cardamine hirsuta HOM05D003962 ORTHO05D004714 5.7e-103 380.2 1110 39.8
Aa31sc139G70 Aethionema arabicum HOM05D003962 ORTHO05D004714 2.2e-102 378.3 1023 42.3
Lj2A167T45 Lonicera japonica HOM05D003962 ORTHO05D004714 6.3e-102 376.7 816 35.9
Ah.13g070110 Amaranthus hybridus HOM05D003962 ORTHO05D004714 5.3e-101 373.6 1257 35.6
Actinidia04199 Actinidia chinensis HOM05D003962 ORTHO05D004714 2.2e-99 368.2 806 36.2
AUR62019379 Chenopodium quinoa HOM05D003962 ORTHO05D004714 2.2e-99 368.2 1195 34.4
Rhsim02G0244100 Rhododendron simsii HOM05D003962 ORTHO05D004714 1.4e-98 365.5 806 37.0
vmacro11467 Vaccinium macrocarpon HOM05D003962 ORTHO05D004714 2.7e-97 361.3 815 36.8
MBI07_g07101_MAGBIO Magnolia biondii HOM05D003962 ORTHO05D004714 3.9e-96 357.5 817 39.2
Solyc08g082410.4 Solanum lycopersicum HOM05D003962 ORTHO05D004714 2.0e-95 355.1 611 40.1
CAN.G1804.9 Capsicum annuum HOM05D003962 ORTHO05D004714 1.3e-94 352.4 847 35.9
PGSC0003DMG400012278 Solanum tuberosum HOM05D003962 ORTHO05D004714 1.3e-94 352.4 610 40.2
PSO135G0074 Papaver somniferum HOM05D003962 ORTHO05D004714 6.9e-93 346.7 659 39.2
Migut.A00639 Erythranthe guttata HOM05D003962 ORTHO05D004714 3.8e-91 340.9 815 36.2
PSO384G0521 Papaver somniferum HOM05D003962 ORTHO05D004714 1.9e-90 338.6 738 36.3
Ah.07g205820 Amaranthus hybridus HOM05D003962 ORTHO05D004714 2.5e-90 338.2 1020 37.2
BcaNung06205 Brassica carinata HOM05D003962 ORTHO05D004714 7.9e-89 333.2 805 35.3
Actinidia27315 Actinidia chinensis HOM05D003962 ORTHO05D004714 5.1e-88 330.5 688 36.5
A03p15150 Brassica napus HOM05D003962 ORTHO05D004714 6.7e-88 330.1 762 36.6
CSS0006905 Camellia sinensis var. sinensis HOM05D003962 ORTHO05D004714 8.8e-88 329.7 655 38.6
BraA03t10810Z Brassica rapa HOM05D003962 ORTHO05D004714 1.5e-87 328.9 767 36.1
Rhsim02G0244200 Rhododendron simsii HOM05D003962 ORTHO05D004714 7.4e-87 326.6 904 34.1
MSTRG.25678 Avicennia marina HOM05D003962 ORTHO05D004714 3.7e-86 324.3 812 35.1
PSO170G0250 Papaver somniferum HOM05D003962 ORTHO05D004714 1.4e-85 322.4 1020 33.0
MBI06_g08468_MAGBIO Magnolia biondii HOM05D003962 ORTHO05D004714 2.6e-84 318.2 1254 34.3
Oeu054025.1 Olea europaea HOM05D003962 ORTHO05D004714 7.7e-84 316.6 831 33.2
PSO063G5170 Papaver somniferum HOM05D003962 ORTHO05D004714 1.3e-83 315.8 1017 32.6
Peaxi162Scf00074g00821 Petunia axillaris HOM05D003962 ORTHO05D004714 1.7e-83 315.5 782 36.2
Nitab4.5_0002944g0030 Nicotiana tabacum HOM05D003962 ORTHO05D004714 5.0e-83 313.9 823 33.9
BolC3t14179H Brassica oleracea HOM05D003962 ORTHO05D004714 2.5e-82 311.6 1182 37.7
SalBow1G2835 Salvia bowleyana HOM05D003962 ORTHO05D004714 3.2e-82 311.2 802 34.4
SalBow1G4038 Salvia bowleyana HOM05D003962 ORTHO05D004714 3.2e-82 311.2 802 34.4
SHI02385 Sapria himalayana HOM05D003962 ORTHO05D004714 5.5e-82 310.5 525 42.3
Sc19g0000840 Simmondsia chinensis HOM05D003962 ORTHO05D004714 5.5e-82 310.5 1077 34.7
MSTRG.13886 Avicennia marina HOM05D003962 ORTHO05D004714 8.0e-81 306.6 807 34.2
Thhalv10026934m.g Eutrema salsugineum HOM05D003962 ORTHO05D004714 1.8e-80 305.4 1054 36.1
Oeu063516.1 Olea europaea HOM05D003962 ORTHO05D004714 1.8e-80 305.4 817 33.2
Nitab4.5_0007367g0070 Nicotiana tabacum HOM05D003962 ORTHO05D004714 4.0e-80 304.3 608 37.3
BcaC01g06252 Brassica carinata HOM05D003962 ORTHO05D004714 3.7e-78 297.7 1222 35.1
Sc25g0000880 Simmondsia chinensis HOM05D003962 ORTHO05D004714 1.8e-77 295.4 1129 35.6
C03p17680 Brassica napus HOM05D003962 ORTHO05D004714 1.0e-75 289.7 1187 37.2
Oeu009961.1 Olea europaea HOM05D003962 ORTHO05D004714 3.6e-73 281.2 1002 33.6
SGA_v2.0_scaffold96G29015 Striga asiatica HOM05D003962 ORTHO05D004714 3.4e-71 274.6 825 32.5
SGA_v2.0_scaffold305G47981 Striga asiatica HOM05D003962 ORTHO05D004714 9.8e-71 273.1 814 33.9
ECA246G1296 Erigeron canadensis HOM05D003962 ORTHO05D004714 8.3e-70 270.0 807 32.6
vmacro11361 Vaccinium macrocarpon HOM05D003962 ORTHO05D004714 9.4e-66 256.5 777 32.6
ATR0602G039 Amborella trichopoda HOM05D003962 ORTHO05D004714 9.5e-58 229.9 834 34.5
Oeu058004.1 Olea europaea HOM05D003962 ORTHO05D004714 1.0e-56 226.5 418 38.5
Nitab4.5_0006775g0080 Nicotiana tabacum HOM05D003962 ORTHO05D004714 1.1e-53 216.5 817 30.2
Os01g0655400 Oryza sativa ssp. japonica HOM05D003962 ORTHO05D004714 5.4e-53 214.2 613 31.8
DCAR_006489 Daucus carota HOM05D003962 ORTHO05D004714 1.6e-49 202.6 607 31.0
HanXRQChr06g0166431 Helianthus annuus HOM05D003962 ORTHO05D004714 2.1e-49 202.2 632 30.5
HanXRQChr17g0534811 Helianthus annuus HOM05D003962 ORTHO05D004714 2.3e-48 198.7 1072 31.9
Prupe.5G120600 Prunus persica HOM05D003962 ORTHO05D004714 1.3e-46 193.0 612 29.9
Zm00001eb359440 Zea mays HOM05D003962 ORTHO05D004714 1.1e-45 189.9 1067 26.1
HPP92_024026 Vanilla planifolia HOM05D003962 ORTHO05D004714 7.0e-45 187.2 595 30.1
Nitab4.5_0001210g0080 Nicotiana tabacum HOM05D003962 ORTHO05D004714 6.0e-44 184.1 702 29.3
Zm00001eb158050 Zea mays HOM05D003962 ORTHO05D004714 1.1e-37 163.3 773 26.9
CDE10G0926 Ceratophyllum demersum HOM05D003962 ORTHO05D004714 3.0e-35 155.2 617 28.5
CDE10G1062 Ceratophyllum demersum HOM05D003962 ORTHO05D004714 3.3e-34 151.8 607 28.3
CDE09G1087 Ceratophyllum demersum HOM05D003962 ORTHO05D004714 2.1e-33 149.1 600 28.3
CDE02G1812 Ceratophyllum demersum HOM05D003962 ORTHO05D004714 9.2e-29 133.7 662 26.0
unitig_0.g2842 Utricularia gibba HOM05D003962 ORTHO05D004714 2.7e-28 132.1 415 29.9
unitig_88.g27642 Utricularia gibba HOM05D003962 ORTHO05D004714 3.9e-27 128.3 553 27.7
ECA233G2741 Erigeron canadensis HOM05D003962 ORTHO05D004714 6.2e-25 120.9 555 26.7
SEGI_14221 Sequoiadendron giganteum HOM05D003962 ORTHO05D004714 3.3e-18 98.6 778 24.6
Lsat_1_v5_gn_3_10880 Lactuca sativa HOM05D003962 ORTHO05D004714 6.9e-16 90.9 1122 27.5
ATR1089G043 Amborella trichopoda HOM05D003962 ORTHO05D004714 2.2e-14 85.9 630 26.0
vmacro11359 Vaccinium macrocarpon HOM05D003962 ORTHO05D004714 2.7e-12 79.0 144 31.9
vmacro11465 Vaccinium macrocarpon HOM05D003962 ORTHO05D004714 2.7e-12 79.0 144 31.9
TAR375G1118 Trochodendron aralioides HOM05D003962 ORTHO05D004714 2.5e-10 72.4 498 31.3
SHI02386 Sapria himalayana HOM05D003962 ORTHO05D004714 9.6e-10 70.5 100 52.0
SEGI_41344 Sequoiadendron giganteum HOM05D003962 ORTHO05D004714 6.2e-09 67.8 697 22.8
HanXRQChr07g0190851 Helianthus annuus HOM05D003962 ORTHO05D004714 2.6e-07 62.4 249 26.9
SHI02387 Sapria himalayana HOM05D003962 ORTHO05D004714 2.6e-07 62.4 105 49.5


User provided reference genes

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