Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.015G012700 Populus trichocarpa HOM05D001081 ORTHO05D007101 4.8e-67 257.7 128 100.0
Potri.012G015800 Populus trichocarpa HOM05D001081 ORTHO05D007101 1.2e-65 253.1 128 97.7
Manes.18G126800 Manihot esculenta HOM05D001081 ORTHO05D007101 1.6e-59 232.6 125 90.4
TWI74G0183 Tripterygium wilfordii HOM05D001081 ORTHO05D007101 1.2e-57 226.5 127 86.6
Cpa.g.sc3.88 Carica papaya HOM05D001081 ORTHO05D007101 5.5e-55 217.6 127 82.7
Sed0012325 Sechium edule HOM05D001081 ORTHO05D007101 1.6e-54 216.1 127 80.3
Cfa016232 Carpinus fangiana HOM05D001081 ORTHO05D007101 6.0e-54 214.2 128 80.5
Hund21005 Selenicereus undatus HOM05D001081 ORTHO05D007101 6.0e-54 214.2 128 80.5
Duzib068G1165 Durio zibethinus HOM05D001081 ORTHO05D007101 7.9e-54 213.8 127 81.1
Ah.05g173160 Amaranthus hybridus HOM05D001081 ORTHO05D007101 1.3e-53 213.0 127 81.1
Glyma.05G143900 Glycine max HOM05D001081 ORTHO05D007101 1.3e-53 213.0 127 79.5
Gohir.A05G100100 Gossypium hirsutum HOM05D001081 ORTHO05D007101 1.3e-53 213.0 127 81.1
QL09p008866 Quercus lobata HOM05D001081 ORTHO05D007101 1.3e-53 213.0 127 80.3
QL09p009112 Quercus lobata HOM05D001081 ORTHO05D007101 1.3e-53 213.0 127 80.3
CiPaw.06G046200 Carya illinoinensis HOM05D001081 ORTHO05D007101 1.8e-53 212.6 128 80.5
Haze_00208 Corylus avellana HOM05D001081 ORTHO05D004708 2.3e-53 212.2 127 80.3
Duzib205G0894 Durio zibethinus HOM05D001081 ORTHO05D007101 2.3e-53 212.2 127 81.1
COL.COLO4_16767 Corchorus olitorius HOM05D001081 ORTHO05D007101 3.0e-53 211.8 127 80.3
Eucgr.F01156 Eucalyptus grandis HOM05D001081 ORTHO05D007101 5.1e-53 211.1 125 80.0
Gohir.D05G099900 Gossypium hirsutum HOM05D001081 ORTHO05D007101 5.1e-53 211.1 127 80.3
Gorai.009G103900 Gossypium raimondii HOM05D001081 ORTHO05D007101 5.1e-53 211.1 127 80.3
Glyma.08G100200 Glycine max HOM05D001081 ORTHO05D007101 6.7e-53 210.7 127 78.7
Nn6g34886 Nelumbo nucifera HOM05D001081 ORTHO05D007101 6.7e-53 210.7 124 80.6
Nn3g16671 Nelumbo nucifera HOM05D001081 ORTHO05D007101 8.7e-53 210.3 124 80.6
Ah.03g146510 Amaranthus hybridus HOM05D001081 ORTHO05D007101 1.1e-52 209.9 127 80.3
Lalb_Chr13g0294051 Lupinus albus HOM05D001081 ORTHO05D007101 1.1e-52 209.9 127 78.0
Lj4g0009093 Lotus japonicus HOM05D001081 ORTHO05D007101 1.5e-52 209.5 127 79.5
Lj5g0017992 Lotus japonicus HOM05D001081 ORTHO05D007101 1.5e-52 209.5 127 79.5
Thecc.03G199300 Theobroma cacao HOM05D001081 ORTHO05D007101 1.5e-52 209.5 127 79.5
Ciclev10022846m.g Citrus clementina HOM05D001081 ORTHO05D007101 1.9e-52 209.1 127 81.1
Sed0024875 Sechium edule HOM05D001081 ORTHO05D007101 2.5e-52 208.8 127 79.5
RcHm_v2.0_Chr1g0380551 Rosa chinensis HOM05D001081 ORTHO05D007101 4.3e-52 208.0 127 78.7
Phvul.003G125501 Phaseolus vulgaris HOM05D001081 ORTHO05D007101 7.4e-52 207.2 127 77.2
VMungo0251G0734 Vigna mungo HOM05D001081 ORTHO05D007101 7.4e-52 207.2 127 77.2
GSVIVG01009969001 Vitis vinifera HOM05D001081 ORTHO05D007101 9.6e-52 206.8 121 81.0
Lj4P697T30 Lonicera japonica HOM05D001081 ORTHO05D007101 1.3e-51 206.5 124 78.2
Phvul.001G061700 Phaseolus vulgaris HOM05D001081 ORTHO05D007101 1.3e-51 206.5 127 77.2
PGR083G2221 Punica granatum HOM05D001081 ORTHO05D007101 1.6e-51 206.1 125 78.4
CANSAT21G1508 Cannabis sativa HOM05D001081 ORTHO05D007101 2.8e-51 205.3 127 79.5
AUR62023429 Chenopodium quinoa HOM05D001081 ORTHO05D007101 4.8e-51 204.5 128 78.1
TAR625G0271 Trochodendron aralioides HOM05D001081 ORTHO05D007101 6.2e-51 204.1 127 78.0
Sc13g0009920 Simmondsia chinensis HOM05D001081 ORTHO05D007101 8.2e-51 203.8 127 78.0
PGSC0003DMG401028646 Solanum tuberosum HOM05D001081 ORTHO05D007101 8.2e-51 203.8 124 77.4
PGSC0003DMG402028646 Solanum tuberosum HOM05D001081 ORTHO05D007101 8.2e-51 203.8 124 77.4
Aqoxy3G01434 Aquilegia oxysepala HOM05D001081 ORTHO05D007101 1.1e-50 203.4 124 79.0
AUR62018052 Chenopodium quinoa HOM05D001081 ORTHO05D007101 1.1e-50 203.4 128 77.3
ECA238G0006 Erigeron canadensis HOM05D001081 ORTHO05D007101 1.1e-50 203.4 124 76.6
FvH4_7g31560 Fragaria vesca HOM05D001081 ORTHO05D007101 1.1e-50 203.4 127 78.0
FAN06G0656 Fragaria x ananassa HOM05D001081 ORTHO05D007101 1.1e-50 203.4 127 78.0
HanXRQChr14g0429651 Helianthus annuus HOM05D001081 ORTHO05D007101 1.1e-50 203.4 124 76.6
CDE05G3015 Ceratophyllum demersum HOM05D001081 ORTHO05D007101 1.8e-50 202.6 127 75.6
CsaV3_3G019840 Cucumis sativus L. HOM05D001081 ORTHO05D007101 1.8e-50 202.6 118 81.4
MELO3C008496.2 Cucumis melo HOM05D001081 ORTHO05D007101 2.4e-50 202.2 118 81.4
Psat7g080240 Pisum sativum HOM05D001081 ORTHO05D007101 2.4e-50 202.2 127 76.4
EL10Ac1g00785 Beta vulgaris HOM05D001081 ORTHO05D007101 3.1e-50 201.8 124 78.2
Ca_18157_v3 Cicer arietinum L. HOM05D001081 ORTHO05D007101 3.1e-50 201.8 127 75.6
FAN10G3364 Fragaria x ananassa HOM05D001081 ORTHO05D007101 3.1e-50 201.8 127 77.2
FAN10G4231 Fragaria x ananassa HOM05D001081 ORTHO05D007101 3.1e-50 201.8 127 77.2
FAN01G2588 Fragaria x ananassa HOM05D001081 ORTHO05D007101 4.1e-50 201.4 127 77.2
Peaxi162Scf00071g00017 Petunia axillaris HOM05D001081 ORTHO05D007101 4.1e-50 201.4 124 78.2
Aqoxy4G03008 Aquilegia oxysepala HOM05D001081 ORTHO05D007101 5.3e-50 201.1 124 77.4
Nitab4.5_0004513g0030 Nicotiana tabacum HOM05D001081 ORTHO05D007101 5.3e-50 201.1 124 77.4
unitig_32.g11232 Utricularia gibba HOM05D001081 ORTHO05D007101 5.3e-50 201.1 124 76.6
CAN.G411.51 Capsicum annuum HOM05D001081 ORTHO05D007101 6.9e-50 200.7 124 75.8
FAN06G3917 Fragaria x ananassa HOM05D001081 ORTHO05D007101 6.9e-50 200.7 127 77.2
TAR381G1700 Trochodendron aralioides HOM05D001081 ORTHO05D007101 6.9e-50 200.7 128 75.8
MBI07_g23667_MAGBIO Magnolia biondii HOM05D001081 ORTHO05D007101 1.2e-49 199.9 123 77.2
SHI02421 Sapria himalayana HOM05D006156 ORTHO05D007101 1.2e-49 199.9 125 76.8
TPR.G9557 Trifolium pratense HOM05D001081 ORTHO05D007101 1.2e-49 199.9 128 76.6
Nitab4.5_0004146g0010 Nicotiana tabacum HOM05D001081 ORTHO05D007101 2.0e-49 199.1 124 76.6
Atru.chr12.2201 Acer truncatum HOM05D001081 ORTHO05D007101 4.5e-49 198.0 128 75.8
THA.LOC104798899 Tarenaya hassleriana HOM05D001081 ORTHO05D007101 5.8e-49 197.6 127 74.0
FAN03G0412 Fragaria x ananassa HOM05D001081 ORTHO05D007101 1.0e-48 196.8 127 76.4
Medtr8g079498 Medicago truncatula HOM05D001081 ORTHO05D007101 1.0e-48 196.8 128 75.0
Prupe.2G309800 Prunus persica HOM05D001081 ORTHO05D007101 1.7e-48 196.1 127 74.0
Cc10_g01340 Coffea canephora HOM05D001081 ORTHO05D007101 3.8e-48 194.9 125 76.0
vmacro12512 Vaccinium macrocarpon HOM05D001081 ORTHO05D007101 3.8e-48 194.9 124 74.2
MSTRG.22347 Avicennia marina HOM05D001081 ORTHO05D007101 5.0e-48 194.5 124 75.0
PSO541G4732 Papaver somniferum HOM05D001081 ORTHO05D007101 6.5e-48 194.1 127 73.2
PSO675G3624 Papaver somniferum HOM05D001081 ORTHO05D007101 6.5e-48 194.1 127 73.2
SGA_v2.0_scaffold25G11207 Striga asiatica HOM05D001081 ORTHO05D007101 6.5e-48 194.1 124 74.2
SGA_v2.0_scaffold19G08564 Striga asiatica HOM05D001081 ORTHO05D007101 8.4e-48 193.7 124 74.2
Sopen12g021900 Solanum pennellii HOM05D001081 ORTHO05D007101 1.1e-47 193.4 120 75.0
Lsat_1_v5_gn_2_7800 Lactuca sativa HOM05D000015 ORTHO05D002445 1.4e-47 193.0 125 72.0
Sopen12g021840 Solanum pennellii HOM05D001081 ORTHO05D007101 1.4e-47 193.0 120 74.2
THA.LOC104823111 Tarenaya hassleriana HOM05D001081 ORTHO05D007101 1.4e-47 193.0 127 71.7
Thhalv10026223m.g Eutrema salsugineum HOM05D001081 ORTHO05D007101 2.5e-47 192.2 127 73.2
Atru.chr9.478 Acer truncatum HOM05D001081 ORTHO05D007101 3.2e-47 191.8 128 73.4
SalBow6G0310 Salvia bowleyana HOM05D001081 ORTHO05D007101 4.2e-47 191.4 124 74.2
A01p13390 Brassica napus HOM05D001081 ORTHO05D007101 7.1e-47 190.7 127 72.4
BraA01t01281Z Brassica rapa HOM05D001081 ORTHO05D007101 7.1e-47 190.7 127 72.4
AL7G31700 Arabidopsis lyrata HOM05D001081 ORTHO05D007101 1.2e-46 189.9 127 72.4
DCAR_013886 Daucus carota HOM05D001081 ORTHO05D007101 1.2e-46 189.9 124 71.8
Sp7g20190 Schrenkiella parvula HOM05D001081 ORTHO05D007101 1.2e-46 189.9 127 72.4
Carub.0007s1934 Capsella rubella HOM05D001081 ORTHO05D007101 1.6e-46 189.5 127 70.9
BcaC09g51172 Brassica carinata HOM05D001081 ORTHO05D007101 2.1e-46 189.1 127 72.4
BcaNung05107 Brassica carinata HOM05D001081 ORTHO05D007101 2.1e-46 189.1 127 72.4
BolC1t01570H Brassica oleracea HOM05D001081 ORTHO05D007101 2.1e-46 189.1 127 72.4
vmacro07565 Vaccinium macrocarpon HOM05D001081 ORTHO05D007101 2.1e-46 189.1 124 71.0
MD07G1288300 Malus domestica HOM05D001081 ORTHO05D007101 2.7e-46 188.7 127 70.1
Migut.N03179 Erythranthe guttata HOM05D001081 ORTHO05D007101 3.5e-46 188.3 124 73.4
Solyc12g042700.3 Solanum lycopersicum HOM05D001081 ORTHO05D007101 3.5e-46 188.3 120 73.3
AT4G22000 Arabidopsis thaliana HOM05D001081 ORTHO05D007101 4.6e-46 188.0 127 71.7
C01p16100 Brassica napus HOM05D001081 ORTHO05D007101 4.6e-46 188.0 127 71.7
Aa31LG6G3950 Aethionema arabicum HOM05D001081 ORTHO05D007101 2.3e-45 185.7 127 70.1
Os05g0114600 Oryza sativa ssp. japonica HOM05D001081 ORTHO05D007101 3.0e-45 185.3 127 70.9
CARHR228810 Cardamine hirsuta HOM05D001081 ORTHO05D007101 5.1e-45 184.5 128 71.1
Zm00001eb355650 Zea mays HOM05D001081 ORTHO05D007101 3.3e-44 181.8 127 72.4
HPP92_008968 Vanilla planifolia HOM05D001081 ORTHO05D007101 4.8e-43 177.9 118 70.3
CDE11G0170 Ceratophyllum demersum HOM05D001081 ORTHO05D007101 6.9e-42 174.1 127 70.1
MSTRG.25269 Avicennia marina HOM05D001081 ORTHO05D007101 1.5e-41 172.9 167 55.1
SEGI_15379 Sequoiadendron giganteum HOM05D001081 ORTHO05D007101 1.7e-40 169.5 128 70.3
ATR1134G096 Amborella trichopoda HOM05D001081 ORTHO05D007101 5.0e-40 167.9 96 80.2
AUR62013725 Chenopodium quinoa HOM05D001081 ORTHO05D007101 1.4e-39 166.4 106 74.5
ClCG05G008950 Citrullus lanatus HOM05D001081 ORTHO05D007101 1.4e-34 149.8 87 83.9
Actinidia17007 Actinidia chinensis HOM05D001081 ORTHO05D007101 1.7e-32 142.9 80 81.2
BcaB03g11721 Brassica carinata HOM05D001081 ORTHO05D007101 1.7e-32 142.9 103 69.9
CSS0017659 Camellia sinensis var. sinensis HOM05D001081 ORTHO05D007101 5.1e-29 131.3 82 74.4
Dinv31879 Davidia involucrata HOM05D001081 ORTHO05D007101 4.8e-27 124.8 82 75.6
Mapoly0012s0096 Marchantia polymorpha HOM05D001081 ORTHO05D007101 4.8e-27 124.8 98 62.2
Solyc12g042720.3 Solanum lycopersicum HOM05D001081 ORTHO05D007101 1.2e-25 120.2 76 73.7
SMO356G0374 Selaginella moellendorffii HOM05D001081 ORTHO05D007101 5.0e-24 114.8 86 61.6
Pp3c15_6340 Physcomitrium patens HOM05D001081 ORTHO05D007101 8.5e-24 114.0 89 62.9
Gorai.006G039100 Gossypium raimondii HOM05D001081 ORTHO05D007101 1.5e-23 113.2 127 53.5
Gohir.A09G033580 Gossypium hirsutum HOM05D001081 ORTHO05D007101 3.2e-23 112.1 67 80.6
Gohir.D09G034100 Gossypium hirsutum HOM05D001081 ORTHO05D007101 7.2e-23 110.9 67 82.1
CSS0023065 Camellia sinensis var. sinensis HOM05D001081 ORTHO05D007101 2.2e-19 99.4 61 77.0
CSS0034162 Camellia sinensis var. sinensis HOM05D001081 ORTHO05D007101 9.1e-18 94.0 57 78.9
Nitab4.5_0001077g0030 Nicotiana tabacum HOM05D012963 ORTHO05D007101 3.5e-17 92.0 82 52.4
CBR_g8977 Chara braunii HOM05D001081 ORTHO05D007101 4.2e-15 85.1 97 46.4
arahy.Tifrunner.gnm1.ann1.EUX55C Arachis hypogaea HOM05D001081 ORTHO05D007101 3.6e-14 82.0 51 80.4
Zm00001eb266390 Zea mays HOM05D001081 ORTHO05D007101 1.4e-10 70.1 112 42.9
DCAR_016735 Daucus carota HOM05D001081 ORTHO05D007101 2.2e-08 62.8 42 61.9
Nitab4.5_0002544g0090 Nicotiana tabacum HOM05D001081 ORTHO05D007101 5.0e-08 61.6 39 66.7
Actinidia15449 Actinidia chinensis HOM05D001081 ORTHO05D007101 6.5e-08 61.2 36 80.6


User provided reference genes

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