Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.015G005700 Populus trichocarpa HOM05D002916 ORTHO05D003152 1.6e-78 296.2 169 100.0
Potri.012G022300 Populus trichocarpa HOM05D002916 ORTHO05D003152 5.3e-58 228.0 171 72.5
Sabra12G0011500 Salix brachista HOM05D002916 ORTHO05D003152 1.3e-51 206.8 159 70.4
Sabra15G0004100 Salix brachista HOM05D002916 ORTHO05D003152 3.5e-49 198.7 169 66.3
Sabra05G0140200 Salix brachista HOM05D002916 ORTHO05D003152 3.7e-43 178.7 159 61.6
Haze_00282 Corylus avellana HOM05D002916 ORTHO05D003152 5.4e-42 174.9 162 61.1
Cfa016172 Carpinus fangiana HOM05D002916 ORTHO05D003152 5.9e-41 171.4 162 59.9
CiPaw.06G042000 Carya illinoinensis HOM05D002916 ORTHO05D003152 1.1e-39 167.2 167 56.9
Thecc.03G207400 Theobroma cacao HOM05D002916 ORTHO05D003152 5.2e-37 158.3 167 54.5
Manes.01G042300 Manihot esculenta HOM05D002916 ORTHO05D003152 6.8e-37 157.9 158 57.0
Gohir.D12G247400 Gossypium hirsutum HOM05D002916 ORTHO05D003152 4.5e-33 145.2 148 53.4
QL09p007312 Quercus lobata HOM05D002916 ORTHO05D003152 7.8e-33 144.4 144 54.9
TWI23G0095 Tripterygium wilfordii HOM05D002916 ORTHO05D003152 2.3e-32 142.9 146 54.1
Gorai.008G265400 Gossypium raimondii HOM05D002916 ORTHO05D003152 8.6e-32 141.0 132 56.1
Duzib084G1372 Durio zibethinus HOM05D002916 ORTHO05D003152 1.9e-31 139.8 167 50.3
Gohir.A12G246700 Gossypium hirsutum HOM05D002916 ORTHO05D003152 3.3e-31 139.0 148 52.7
Prupe.2G317800 Prunus persica HOM05D002916 ORTHO05D003152 4.3e-31 138.7 146 56.8
Dinv29219 Davidia involucrata HOM05D002916 ORTHO05D003152 5.6e-31 138.3 146 52.7
COL.COLO4_14359 Corchorus olitorius HOM05D002916 ORTHO05D003152 9.5e-31 137.5 170 51.2
Nn3g18859 Nelumbo nucifera HOM05D002916 ORTHO05D003152 2.3e-29 132.9 152 60.5
QL02p027552 Quercus lobata HOM05D002916 ORTHO05D003152 4.0e-29 132.1 166 44.0
TAR636G0145 Trochodendron aralioides HOM05D002916 ORTHO05D003152 1.5e-28 130.2 162 45.7
Atru.chr12.2401 Acer truncatum HOM05D002916 ORTHO05D003152 3.7e-27 125.6 158 51.3
Eucgr.K00425 Eucalyptus grandis HOM05D002916 ORTHO05D003152 3.7e-27 125.6 171 45.0
Hma1.2p1_0094F.1_g047290 Hydrangea macrophylla HOM05D002916 ORTHO05D003152 3.7e-27 125.6 176 42.6
Phvul.009G046400 Phaseolus vulgaris HOM05D002916 ORTHO05D003152 1.9e-26 123.2 161 44.7
MBI04_g15577_MAGBIO Magnolia biondii HOM05D002916 ORTHO05D003152 9.2e-26 120.9 161 42.9
DCAR_008976 Daucus carota HOM05D002916 ORTHO05D003152 7.8e-25 117.9 167 41.3
VMungo1309G2175 Vigna mungo HOM05D002916 ORTHO05D003152 7.8e-25 117.9 157 43.3
Ca_16766_v3 Cicer arietinum L. HOM05D002916 ORTHO05D003152 1.3e-24 117.1 159 47.2
Glyma.04G229700 Glycine max HOM05D002916 ORTHO05D003152 1.3e-24 117.1 157 44.6
PGR042G3508 Punica granatum HOM05D002916 ORTHO05D003152 1.3e-24 117.1 149 41.6
PSO266G0041 Papaver somniferum HOM05D002916 ORTHO05D003152 1.7e-24 116.7 172 41.9
Rhsim03G0214600 Rhododendron simsii HOM05D001023 ORTHO05D000912 3.0e-24 115.9 171 43.9
Actinidia34261 Actinidia chinensis HOM05D002916 ORTHO05D003152 5.0e-24 115.2 139 45.3
Glyma.06G135000 Glycine max HOM05D002916 ORTHO05D003152 8.6e-24 114.4 161 44.1
PSO478G4364 Papaver somniferum HOM05D002916 ORTHO05D003152 5.6e-23 111.7 174 41.4
Manes.12G116500 Manihot esculenta HOM05D002916 ORTHO05D003152 9.5e-23 110.9 173 41.6
FAN10G0037 Fragaria x ananassa HOM05D002916 ORTHO05D003152 1.6e-22 110.2 141 45.4
Haze_09193 Corylus avellana HOM05D002916 ORTHO05D003152 1.1e-21 107.5 166 38.6
Duzib068G0006 Durio zibethinus HOM05D002916 ORTHO05D003152 1.1e-21 107.5 124 51.6
PSO478G4153 Papaver somniferum HOM05D002916 ORTHO05D003152 1.1e-21 107.5 173 38.2
Psat5g073040 Pisum sativum HOM05D002916 ORTHO05D003152 1.1e-21 107.5 162 44.4
DCAR_020363 Daucus carota HOM05D002916 ORTHO05D003152 1.8e-21 106.7 161 42.2
FAN01G1170 Fragaria x ananassa HOM05D002916 ORTHO05D003152 3.1e-21 105.9 141 45.4
ClCG01G000110 Citrullus lanatus HOM05D002916 ORTHO05D003152 4.0e-21 105.5 145 40.7
FAN10G3649 Fragaria x ananassa HOM05D002916 ORTHO05D003152 4.0e-21 105.5 141 44.0
CsaV3_5G000050 Cucumis sativus L. HOM05D002916 ORTHO05D003152 5.2e-21 105.1 169 36.7
Sed0016396 Sechium edule HOM05D002916 ORTHO05D003152 6.8e-21 104.8 163 39.3
MELO3C005922.2 Cucumis melo HOM05D002916 ORTHO05D003152 1.5e-20 103.6 169 35.5
TPR.G36204 Trifolium pratense HOM05D002916 ORTHO05D003152 1.5e-20 103.6 164 42.7
RcHm_v2.0_Chr1g0382771 Rosa chinensis HOM05D002916 ORTHO05D003152 4.4e-20 102.1 141 45.4
CANSAT21G0001 Cannabis sativa HOM05D002916 ORTHO05D003152 1.4e-18 97.1 145 43.4
Lalb_Chr08g0239761 Lupinus albus HOM05D002916 ORTHO05D003152 4.1e-18 95.5 135 43.7
FAN03G0202 Fragaria x ananassa HOM05D002916 ORTHO05D003152 5.4e-18 95.1 138 41.3
Medtr3g092470 Medicago truncatula HOM05D002916 ORTHO05D003152 6.0e-17 91.7 147 45.6
SalBow6G0378 Salvia bowleyana HOM05D002916 ORTHO05D003152 6.0e-17 91.7 143 39.2
ATR0078G023 Amborella trichopoda HOM05D002916 ORTHO05D003152 1.1e-15 87.4 162 34.0
Ciclev10012941m.g Citrus clementina HOM05D002916 ORTHO05D003152 1.5e-15 87.0 159 34.6
CDE12G0661 Ceratophyllum demersum HOM05D002916 ORTHO05D003152 3.3e-15 85.9 127 40.9
Nn6g34891 Nelumbo nucifera HOM05D002916 ORTHO05D003152 1.6e-14 83.6 137 36.5
COL.COLO4_29727 Corchorus olitorius HOM05D002916 ORTHO05D003152 1.4e-13 80.5 164 32.3
Duzib093G0112 Durio zibethinus HOM05D002916 ORTHO05D003152 1.4e-13 80.5 160 31.2
Atru.chr8.1530 Acer truncatum HOM05D002916 ORTHO05D003152 1.8e-13 80.1 158 34.2
Lalb_Chr11g0067321 Lupinus albus HOM05D002916 ORTHO05D003152 1.8e-13 80.1 134 41.0
Atru.chr8.1528 Acer truncatum HOM05D002916 ORTHO05D003152 2.3e-13 79.7 159 34.0
AUR62035612 Chenopodium quinoa HOM05D002916 ORTHO05D003152 2.3e-13 79.7 136 38.2
Nn2g14164 Nelumbo nucifera HOM05D002916 ORTHO05D003152 2.3e-13 79.7 162 32.7
Ah.13g070720 Amaranthus hybridus HOM05D002916 ORTHO05D003152 3.1e-13 79.3 159 34.6
Glyma.19G194943 Glycine max HOM05D002916 ORTHO05D003152 3.1e-13 79.3 157 35.0
DCAR_013390 Daucus carota HOM05D002916 ORTHO05D003152 4.0e-13 79.0 159 32.7
Ciclev10013433m.g Citrus clementina HOM05D002916 ORTHO05D003152 5.2e-13 78.6 167 34.1
DCAR_013392 Daucus carota HOM05D002916 ORTHO05D003152 6.8e-13 78.2 159 32.1
DCAR_007755 Daucus carota HOM05D002916 ORTHO05D003152 8.9e-13 77.8 148 32.4
Rhsim03G0074900 Rhododendron simsii HOM05D002916 ORTHO05D003152 8.9e-13 77.8 169 32.0
EL10Ac3g05193 Beta vulgaris HOM05D002916 ORTHO05D003152 1.2e-12 77.4 128 35.9
Manes.09G055000 Manihot esculenta HOM05D002916 ORTHO05D003152 1.5e-12 77.0 155 33.5
Thecc.05G089800 Theobroma cacao HOM05D002916 ORTHO05D003152 1.5e-12 77.0 148 31.8
Dinv31688 Davidia involucrata HOM05D004140 ORTHO05D006116 4.4e-12 75.5 161 32.9
DCAR_013391 Daucus carota HOM05D002916 ORTHO05D003152 9.9e-12 74.3 158 32.3
Manes.08G025700 Manihot esculenta HOM05D002916 ORTHO05D003152 9.9e-12 74.3 160 30.0
Phvul.001G190500 Phaseolus vulgaris HOM05D002916 ORTHO05D003152 9.9e-12 74.3 161 30.4
SEGI_19412 Sequoiadendron giganteum HOM05D002916 ORTHO05D003152 9.9e-12 74.3 177 32.8
Cpa.g.sc5.15 Carica papaya HOM05D002916 ORTHO05D003152 1.3e-11 73.9 166 31.9
AUR62006014 Chenopodium quinoa HOM05D002916 ORTHO05D003152 2.9e-11 72.8 137 35.8
Haze_16634 Corylus avellana HOM05D002916 ORTHO05D003152 2.9e-11 72.8 154 31.2
Haze_16636 Corylus avellana HOM05D002916 ORTHO05D003152 2.9e-11 72.8 154 31.2
Glyma.03G196300 Glycine max HOM05D002916 ORTHO05D003152 2.9e-11 72.8 158 32.3
TWI53G0172 Tripterygium wilfordii HOM05D002916 ORTHO05D003152 2.9e-11 72.8 162 31.5
Aqoxy4G02773 Aquilegia oxysepala HOM05D002916 ORTHO05D003152 6.4e-11 71.6 172 29.7
EL10Ac3g05192 Beta vulgaris HOM05D002916 ORTHO05D003152 6.4e-11 71.6 136 34.6
Duzib128G0442 Durio zibethinus HOM05D002916 ORTHO05D003152 6.4e-11 71.6 160 31.2
Potri.006G213100 Populus trichocarpa HOM05D002916 ORTHO05D003152 8.3e-11 71.2 165 32.1
QL05p034193 Quercus lobata HOM05D002916 ORTHO05D003152 8.3e-11 71.2 149 32.2
Cfa001906 Carpinus fangiana HOM05D002916 ORTHO05D003152 1.1e-10 70.9 154 30.5
Glyma.10G072400 Glycine max HOM05D002916 ORTHO05D003152 1.1e-10 70.9 166 30.7
CiPaw.01G252200 Carya illinoinensis HOM05D002916 ORTHO05D003152 1.4e-10 70.5 148 32.4
Actinidia31270 Actinidia chinensis HOM05D002916 ORTHO05D003152 1.9e-10 70.1 140 33.6
Lalb_Chr01g0018131 Lupinus albus HOM05D002916 ORTHO05D003152 1.9e-10 70.1 164 29.9
DCAR_013389 Daucus carota HOM05D002916 ORTHO05D003152 2.4e-10 69.7 159 28.3
Migut.F00158 Erythranthe guttata HOM05D002916 ORTHO05D003152 2.4e-10 69.7 145 41.4
Peaxi162Scf00404g00102 Petunia axillaris HOM05D002916 ORTHO05D003152 2.4e-10 69.7 169 30.2
Sc13g0010210 Simmondsia chinensis HOM05D002916 ORTHO05D003152 3.2e-10 69.3 127 42.5
VMungo1383G0514 Vigna mungo HOM05D002916 ORTHO05D003152 3.2e-10 69.3 167 29.9
Gohir.A04G062400 Gossypium hirsutum HOM05D002916 ORTHO05D003152 5.4e-10 68.6 156 28.8
Prupe.7G109500 Prunus persica HOM05D002916 ORTHO05D003152 5.4e-10 68.6 161 29.8
Gohir.D04G099400 Gossypium hirsutum HOM05D002916 ORTHO05D003152 7.1e-10 68.2 156 28.8
Gorai.009G402300 Gossypium raimondii HOM05D002916 ORTHO05D003152 7.1e-10 68.2 156 28.2
FvH4_6g18810 Fragaria vesca HOM05D002916 ORTHO05D003152 9.2e-10 67.8 162 32.1
FAN02G4366 Fragaria x ananassa HOM05D002916 ORTHO05D003152 9.2e-10 67.8 162 32.7
FAN14G1204 Fragaria x ananassa HOM05D002916 ORTHO05D003152 9.2e-10 67.8 162 32.1
TWI74G0225 Tripterygium wilfordii HOM05D002916 ORTHO05D003152 9.2e-10 67.8 160 31.9
EL10Ac4g08766 Beta vulgaris HOM05D002916 ORTHO05D003152 1.6e-09 67.0 73 41.1
Gohir.D01G195600 Gossypium hirsutum HOM05D002916 ORTHO05D003152 1.6e-09 67.0 163 29.4
Gorai.002G239800 Gossypium raimondii HOM05D002916 ORTHO05D003152 1.6e-09 67.0 163 29.4
Ca_09009_v3 Cicer arietinum L. HOM05D002916 ORTHO05D003152 2.1e-09 66.6 160 28.1
Oeu055381.1 Olea europaea HOM05D002916 ORTHO05D003152 2.1e-09 66.6 52 63.5
Cc06_g05820 Coffea canephora HOM05D002916 ORTHO05D003152 3.5e-09 65.9 160 31.2
FAN05G4254 Fragaria x ananassa HOM05D002916 ORTHO05D003152 4.6e-09 65.5 150 32.0
Potri.016G079700 Populus trichocarpa HOM05D002916 ORTHO05D003152 4.6e-09 65.5 146 30.8
Sabra16G0085600 Salix brachista HOM05D002916 ORTHO05D003152 4.6e-09 65.5 148 29.7
Sabra16G0087700 Salix brachista HOM05D002916 ORTHO05D003152 4.6e-09 65.5 148 29.7
Cfa011906 Carpinus fangiana HOM05D002916 ORTHO05D003152 6.0e-09 65.1 87 41.4
FAN05G3486 Fragaria x ananassa HOM05D002916 ORTHO05D003152 6.0e-09 65.1 150 32.0
MSTRG.26638 Avicennia marina HOM05D002916 ORTHO05D003152 7.8e-09 64.7 165 31.5
Gohir.A07G134900 Gossypium hirsutum HOM05D002916 ORTHO05D003152 7.8e-09 64.7 164 27.4
Actinidia05426 Actinidia chinensis HOM05D002916 ORTHO05D003152 1.0e-08 64.3 165 31.5
EL10Ac3g05191 Beta vulgaris HOM05D002916 ORTHO05D003152 1.3e-08 63.9 63 41.3
Lsat_1_v5_gn_5_164861 Lactuca sativa HOM05D002916 ORTHO05D003152 1.3e-08 63.9 147 28.6
Oeu056929.1 Olea europaea HOM05D002916 ORTHO05D003152 1.3e-08 63.9 162 29.0
RcHm_v2.0_Chr3g0473821 Rosa chinensis HOM05D002916 ORTHO05D003152 1.3e-08 63.9 162 30.9
Gohir.A01G206200 Gossypium hirsutum HOM05D002916 ORTHO05D003152 1.7e-08 63.5 165 27.9
Oeu047865.1 Olea europaea HOM05D002916 ORTHO05D003152 1.7e-08 63.5 161 28.0
Gohir.D09G135200 Gossypium hirsutum HOM05D002916 ORTHO05D003152 3.0e-08 62.8 164 27.4
Gorai.006G155100 Gossypium raimondii HOM05D002916 ORTHO05D003152 3.0e-08 62.8 164 27.4
MD14G1023400 Malus domestica HOM05D002916 ORTHO05D003152 3.0e-08 62.8 168 35.7
FvH4_7g32830 Fragaria vesca HOM05D002916 ORTHO05D003152 5.1e-08 62.0 139 33.1
AUR62006186 Chenopodium quinoa HOM05D002916 ORTHO05D003152 8.6e-08 61.2 160 26.9
Eucgr.K02033 Eucalyptus grandis HOM05D002916 ORTHO05D003152 8.6e-08 61.2 180 28.9
Lj1g0017693 Lotus japonicus HOM05D002916 ORTHO05D003152 8.6e-08 61.2 165 29.7
Gohir.A09G139400 Gossypium hirsutum HOM05D002916 ORTHO05D003152 1.9e-07 60.1 119 28.6
Gohir.A11G003500 Gossypium hirsutum HOM05D002916 ORTHO05D003152 1.9e-07 60.1 119 28.6
Glyma.13G153800 Glycine max HOM05D002916 ORTHO05D003152 2.5e-07 59.7 165 30.3
Potri.001G448600 Populus trichocarpa HOM05D002916 ORTHO05D029086 2.5e-07 59.7 169 30.8
Sed0018474 Sechium edule HOM05D002916 ORTHO05D003152 2.5e-07 59.7 163 29.4
MD12G1036700 Malus domestica HOM05D002916 ORTHO05D003152 4.3e-07 58.9 165 29.1
AUR62028520 Chenopodium quinoa HOM05D002916 ORTHO05D003152 5.6e-07 58.5 160 26.9
ClCG04G010060 Citrullus lanatus HOM05D002916 ORTHO05D003152 5.6e-07 58.5 152 35.5
ATR0602G273 Amborella trichopoda HOM05D026466 ORTHO05D003152 7.3e-07 58.2 176 29.5
Hma1.2p1_0084F.1_g043850 Hydrangea macrophylla HOM05D002916 ORTHO05D003152 7.3e-07 58.2 141 31.9
Hma1.2p1_0820F.1_g223855 Hydrangea macrophylla HOM05D002916 ORTHO05D003152 7.3e-07 58.2 141 31.9
Solyc09g009810.1 Solanum lycopersicum HOM05D002916 ORTHO05D003152 7.3e-07 58.2 74 43.2
CsaV3_6G040690 Cucumis sativus L. HOM05D002916 ORTHO05D003152 1.2e-06 57.4 183 27.9
PGSC0003DMG400008880 Solanum tuberosum HOM05D002916 ORTHO05D003152 1.6e-06 57.0 196 26.0
Prupe.4G005300 Prunus persica HOM05D011684 ORTHO05D011224 2.1e-06 56.6 164 33.5
arahy.Tifrunner.gnm1.ann1.1GMW3T Arachis hypogaea HOM05D002916 ORTHO05D003152 2.8e-06 56.2 189 36.0
arahy.Tifrunner.gnm1.ann1.T8X57X Arachis hypogaea HOM05D002916 ORTHO05D003152 2.8e-06 56.2 189 36.0
C09p73040 Brassica napus HOM05D002916 ORTHO05D003152 2.8e-06 56.2 175 25.7
BolC9t60038H Brassica oleracea HOM05D002916 ORTHO05D003152 2.8e-06 56.2 175 25.1
MELO3C024547.2 Cucumis melo HOM05D002916 ORTHO05D003152 2.8e-06 56.2 185 27.0
Migut.L01781 Erythranthe guttata HOM05D002916 ORTHO05D003152 2.8e-06 56.2 162 27.8
A10p32230 Brassica napus HOM05D002916 ORTHO05D003152 3.6e-06 55.8 175 25.1
BraA10t45266Z Brassica rapa HOM05D002916 ORTHO05D003152 3.6e-06 55.8 175 25.1
Prupe.5G132100 Prunus persica HOM05D002916 ORTHO05D029086 3.6e-06 55.8 164 26.8
CARHR209370 Cardamine hirsuta HOM05D002916 ORTHO05D003152 4.7e-06 55.5 180 26.1
AT5G03890 Arabidopsis thaliana HOM05D002916 ORTHO05D003152 6.2e-06 55.1 179 26.8
THA.LOC104816397 Tarenaya hassleriana HOM05D002916 ORTHO05D003152 6.2e-06 55.1 180 33.9
Gohir.A05G000100 Gossypium hirsutum HOM05D002916 ORTHO05D003152 8.1e-06 54.7 164 26.2


User provided reference genes

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