Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.015G002500 Populus trichocarpa HOM05D005840 ORTHO05D007144 1.5e-156 556.2 291 100.0
Sabra15G0001600 Salix brachista HOM05D005840 ORTHO05D007144 9.0e-138 493.8 262 94.7
Manes.01G043400 Manihot esculenta HOM05D005840 ORTHO05D007144 3.2e-103 379.0 298 70.5
QL09p007163 Quercus lobata HOM05D005840 ORTHO05D007144 5.5e-95 351.7 277 67.9
Cpa.g.sc3.150 Carica papaya HOM05D005840 ORTHO05D007144 6.3e-91 338.2 300 60.3
Thecc.03G209000 Theobroma cacao HOM05D005840 ORTHO05D007144 6.3e-91 338.2 276 64.1
TWI14G0550 Tripterygium wilfordii HOM05D005840 ORTHO05D007144 4.1e-90 335.5 271 62.7
TAR375G0732 Trochodendron aralioides HOM05D005840 ORTHO05D007144 1.2e-89 334.0 287 63.1
Dinv35383 Davidia involucrata HOM05D005840 ORTHO05D007144 1.0e-88 330.9 291 59.1
Atru.chr12.2435 Acer truncatum HOM05D005840 ORTHO05D007144 8.5e-88 327.8 293 61.4
Ciclev10021557m.g Citrus clementina HOM05D005840 ORTHO05D007144 1.9e-87 326.6 261 64.0
CSS0020402 Camellia sinensis var. sinensis HOM05D005840 ORTHO05D007144 4.2e-87 325.5 274 63.9
CANSAT21G1965 Cannabis sativa HOM05D005840 ORTHO05D007144 4.2e-87 325.5 292 58.6
Nn3g18788 Nelumbo nucifera HOM05D005840 ORTHO05D007144 4.2e-87 325.5 276 63.8
Prupe.2G319100 Prunus persica HOM05D005840 ORTHO05D007144 5.5e-87 325.1 297 60.6
MD07G1299300 Malus domestica HOM05D005840 ORTHO05D007144 2.7e-86 322.8 269 61.7
Duzib084G0063 Durio zibethinus HOM05D005840 ORTHO05D007144 1.8e-85 320.1 289 59.5
Cc02_g00800 Coffea canephora HOM05D005840 ORTHO05D007144 1.5e-84 317.0 295 58.3
PGSC0003DMG400000562 Solanum tuberosum HOM05D005840 ORTHO05D007144 4.4e-84 315.5 284 57.4
PGR042G3207 Punica granatum HOM05D005840 ORTHO05D007144 5.7e-84 315.1 290 61.0
MD01G1228500 Malus domestica HOM05D005840 ORTHO05D007144 9.7e-84 314.3 264 62.9
Solyc03g081220.1 Solanum lycopersicum HOM05D005840 ORTHO05D007144 1.3e-83 313.9 296 55.4
Sopen03g021950 Solanum pennellii HOM05D005840 ORTHO05D007144 1.7e-83 313.5 296 55.7
CAN.G303.23 Capsicum annuum HOM05D005840 ORTHO05D007144 2.2e-83 313.2 298 57.7
Psat5g071840 Pisum sativum HOM05D005840 ORTHO05D007144 2.8e-83 312.8 280 58.6
Gohir.D11G016500 Gossypium hirsutum HOM05D005840 ORTHO05D007144 3.7e-83 312.4 277 60.3
Gorai.007G017300 Gossypium raimondii HOM05D005840 ORTHO05D007144 3.7e-83 312.4 277 60.6
MELO3C005919.2 Cucumis melo HOM05D005840 ORTHO05D007144 1.1e-82 310.8 275 60.0
Lalb_Chr23g0271941 Lupinus albus HOM05D005840 ORTHO05D007144 1.8e-82 310.1 288 58.7
FvH4_7g32940 Fragaria vesca HOM05D005840 ORTHO05D007144 3.1e-82 309.3 271 62.0
FAN10G3655 Fragaria x ananassa HOM05D005840 ORTHO05D007144 4.1e-82 308.9 270 61.9
Medtr3g092810 Medicago truncatula HOM05D005840 ORTHO05D007144 4.1e-82 308.9 283 57.6
Oeu023690.1 Olea europaea HOM05D005840 ORTHO05D007144 4.1e-82 308.9 288 57.6
RcHm_v2.0_Chr1g0382901 Rosa chinensis HOM05D005840 ORTHO05D007144 5.3e-82 308.5 288 58.3
Lalb_Chr08g0239571 Lupinus albus HOM05D005840 ORTHO05D007144 9.1e-82 307.8 311 55.9
Ca_16781_v3 Cicer arietinum L. HOM05D005840 ORTHO05D007144 1.6e-81 307.0 276 56.5
Gohir.A11G016700 Gossypium hirsutum HOM05D005840 ORTHO05D007144 1.6e-81 307.0 271 60.1
Gorai.004G125300 Gossypium raimondii HOM05D005840 ORTHO05D007144 1.6e-81 307.0 276 60.5
Nitab4.5_0000319g0020 Nicotiana tabacum HOM05D005840 ORTHO05D007144 1.6e-81 307.0 295 54.2
Nitab4.5_0010809g0010 Nicotiana tabacum HOM05D005840 ORTHO05D007144 7.7e-81 304.7 295 53.9
FAN10G0422 Fragaria x ananassa HOM05D005840 ORTHO05D007144 1.3e-80 303.9 270 60.7
AL6G36040 Arabidopsis lyrata HOM05D005840 ORTHO05D007144 2.2e-80 303.1 281 59.1
Gohir.A08G104700 Gossypium hirsutum HOM05D005840 ORTHO05D007144 2.2e-80 303.1 276 59.8
ClCG01G000060 Citrullus lanatus HOM05D005840 ORTHO05D007144 2.9e-80 302.8 230 67.4
TPR.G33360 Trifolium pratense HOM05D005840 ORTHO05D007144 2.9e-80 302.8 288 55.9
DCAR_008987 Daucus carota HOM05D005840 ORTHO05D007144 5.0e-80 302.0 295 54.9
Sed0003210 Sechium edule HOM05D005840 ORTHO05D007144 1.5e-79 300.4 278 59.4
Thhalv10005309m.g Eutrema salsugineum HOM05D005840 ORTHO05D007144 7.2e-79 298.1 280 58.2
MBI12_g45814_MAGBIO Magnolia biondii HOM05D005840 ORTHO05D007144 7.2e-79 298.1 276 61.6
FAN03G2485 Fragaria x ananassa HOM05D005840 ORTHO05D007144 1.2e-78 297.4 267 60.7
CARHR188950 Cardamine hirsuta HOM05D005840 ORTHO05D007144 1.0e-77 294.3 283 57.2
PSO063G5360 Papaver somniferum HOM05D005840 ORTHO05D007144 1.4e-77 293.9 274 60.6
Carub.0006s2229 Capsella rubella HOM05D005840 ORTHO05D007144 3.0e-77 292.7 277 58.1
FAN01G0139 Fragaria x ananassa HOM05D005840 ORTHO05D007144 3.0e-77 292.7 270 59.3
AT5G24460 Arabidopsis thaliana HOM05D005840 ORTHO05D007144 5.2e-77 292.0 282 56.7
CsaV3_5G000100 Cucumis sativus L. HOM05D005840 ORTHO05D007144 8.8e-77 291.2 269 57.6
Sp2g22870 Schrenkiella parvula HOM05D005840 ORTHO05D007144 8.8e-77 291.2 280 57.1
BcaC04g23543 Brassica carinata HOM05D005840 ORTHO05D007144 1.2e-76 290.8 282 57.1
C09p07230 Brassica napus HOM05D005840 ORTHO05D007144 1.2e-76 290.8 282 57.1
Peaxi162Scf00912g10012 Petunia axillaris HOM05D005840 ORTHO05D007144 1.5e-76 290.4 217 65.4
THA.LOC104798983 Tarenaya hassleriana HOM05D005840 ORTHO05D007144 1.5e-76 290.4 302 54.0
BraA09t36291Z Brassica rapa HOM05D005840 ORTHO05D007144 2.6e-76 289.7 282 56.7
Aa31LG11G3710 Aethionema arabicum HOM05D005840 ORTHO05D007144 4.4e-76 288.9 281 57.3
BolC9t53635H Brassica oleracea HOM05D005840 ORTHO05D007144 4.4e-76 288.9 280 56.8
A09p06480 Brassica napus HOM05D005840 ORTHO05D007144 7.5e-76 288.1 282 56.4
Lj1g0001826 Lotus japonicus HOM05D005840 ORTHO05D007144 9.8e-76 287.7 284 54.6
Phvul.009G044800 Phaseolus vulgaris HOM05D005840 ORTHO05D007144 9.8e-76 287.7 299 55.5
MSTRG.8611 Avicennia marina HOM05D005840 ORTHO05D007144 2.2e-75 286.6 293 54.3
Lj3P895T18 Lonicera japonica HOM05D005840 ORTHO05D007144 2.2e-75 286.6 224 66.1
Oeu055391.1 Olea europaea HOM05D005840 ORTHO05D007144 4.8e-75 285.4 214 66.8
Actinidia34271 Actinidia chinensis HOM05D005840 ORTHO05D007144 6.3e-75 285.0 207 68.1
Hma1.2p1_0094F.1_g047400 Hydrangea macrophylla HOM05D005840 ORTHO05D007144 8.3e-75 284.6 218 66.5
Migut.F00150 Erythranthe guttata HOM05D005840 ORTHO05D007144 1.4e-74 283.9 292 54.1
CiPaw.06G041000 Carya illinoinensis HOM05D005840 ORTHO05D007144 1.8e-74 283.5 218 64.2
BcaNung01236 Brassica carinata HOM05D005840 ORTHO05D007144 2.4e-74 283.1 285 55.4
BraA06t26455Z Brassica rapa HOM05D005840 ORTHO05D007144 9.1e-74 281.2 296 54.1
VMungo1309G2416 Vigna mungo HOM05D005840 ORTHO05D007144 9.1e-74 281.2 298 54.0
COL.COLO4_14373 Corchorus olitorius HOM05D005840 ORTHO05D007144 2.7e-73 279.6 206 66.5
unitig_37.g11995 Utricularia gibba HOM05D005840 ORTHO05D007144 2.7e-73 279.6 305 50.5
A06p35290 Brassica napus HOM05D005840 ORTHO05D007144 5.9e-73 278.5 284 54.6
Lsat_1_v5_gn_9_49980 Lactuca sativa HOM05D005840 ORTHO05D007144 5.9e-73 278.5 284 53.5
Glyma.04G228100 Glycine max HOM05D005840 ORTHO05D007144 7.7e-73 278.1 306 52.6
MSTRG.26975 Avicennia marina HOM05D005840 ORTHO05D007144 1.0e-72 277.7 285 53.3
Haze_00300 Corylus avellana HOM05D005840 ORTHO05D007144 1.3e-72 277.3 213 64.8
Glyma.06G136800 Glycine max HOM05D005840 ORTHO05D007144 3.8e-72 275.8 303 52.8
AUR62005991 Chenopodium quinoa HOM05D005840 ORTHO05D007144 5.0e-72 275.4 310 52.6
HanXRQChr10g0305331 Helianthus annuus HOM05D005840 ORTHO05D007144 1.9e-71 273.5 282 52.8
Rhsim03G0215700 Rhododendron simsii HOM05D005840 ORTHO05D007144 1.9e-71 273.5 220 62.3
SalBow6G2506 Salvia bowleyana HOM05D005840 ORTHO05D007144 1.9e-71 273.5 287 53.7
AUR62028079 Chenopodium quinoa HOM05D005840 ORTHO05D007144 5.5e-71 271.9 310 51.9
CDE12G0905 Ceratophyllum demersum HOM05D005840 ORTHO05D007144 7.2e-71 271.6 209 65.6
CDE04G1956 Ceratophyllum demersum HOM05D005840 ORTHO05D007144 9.5e-71 271.2 241 59.8
Ah.13g070770 Amaranthus hybridus HOM05D005840 ORTHO05D007144 1.2e-70 270.8 281 54.1
SGA_v2.0_scaffold18G08468 Striga asiatica HOM05D005840 ORTHO05D007144 2.8e-70 269.6 287 53.0
BcaB04g19821 Brassica carinata HOM05D005840 ORTHO05D007144 3.6e-70 269.2 209 63.6
C07p43220 Brassica napus HOM05D005840 ORTHO05D007144 3.6e-70 269.2 209 63.6
PSO782G2283 Papaver somniferum HOM05D005840 ORTHO05D007144 3.6e-70 269.2 212 63.7
Lsat_1_v5_gn_2_135020 Lactuca sativa HOM05D005840 ORTHO05D007144 4.0e-69 265.8 279 53.0
vmacro22785 Vaccinium macrocarpon HOM05D005840 ORTHO05D007144 6.8e-69 265.0 327 47.7
Sc19g0000580 Simmondsia chinensis HOM05D005840 ORTHO05D007144 8.9e-69 264.6 283 53.0
ECA232G4892 Erigeron canadensis HOM05D005840 ORTHO05D007144 1.3e-67 260.8 226 58.8
Actinidia08699 Actinidia chinensis HOM05D005840 ORTHO05D007144 3.7e-67 259.2 212 61.8
Sed0025728 Sechium edule HOM05D005840 ORTHO05D007144 1.6e-65 253.8 212 59.0
Aqoxy6G02459 Aquilegia oxysepala HOM05D005840 ORTHO05D007144 2.3e-64 250.0 231 58.0
Aqoxy6G02489 Aquilegia oxysepala HOM05D005840 ORTHO05D007144 2.3e-64 250.0 231 58.0
EL10Ac3g05171 Beta vulgaris HOM05D005840 ORTHO05D007144 2.3e-64 250.0 212 59.9
Cc11_g13290 Coffea canephora HOM05D005840 ORTHO05D007144 1.4e-61 240.7 236 55.5
vmacro06444 Vaccinium macrocarpon HOM05D005840 ORTHO05D007144 4.0e-61 239.2 263 49.8
unitig_0.g2444 Utricularia gibba HOM05D005840 ORTHO05D007144 3.5e-57 226.1 200 56.5
unitig_92.g28240 Utricularia gibba HOM05D005840 ORTHO05D007144 3.9e-56 222.6 200 56.0
SHI02291 Sapria himalayana HOM05D005840 ORTHO05D007144 3.3e-55 219.5 209 56.0
HPP92_022381 Vanilla planifolia HOM05D005840 ORTHO05D007144 4.4e-52 209.1 210 54.8
ATR0661G235 Amborella trichopoda HOM05D005840 ORTHO05D007144 7.5e-52 208.4 204 55.4
SEGI_38224 Sequoiadendron giganteum HOM05D005840 ORTHO05D007144 1.7e-51 207.2 204 51.0
BcaB04g19819 Brassica carinata HOM05D005840 ORTHO05D007144 7.1e-50 201.8 189 57.7
COL.COLO4_35601 Corchorus olitorius HOM05D005840 ORTHO05D007144 1.4e-37 161.0 206 45.1
Zm00001eb272540 Zea mays HOM05D005840 ORTHO05D007144 8.9e-37 158.3 205 47.3
Os06g0712200 Oryza sativa ssp. japonica HOM05D005840 ORTHO05D007144 1.5e-36 157.5 218 45.0
Pp3c3_29470 Physcomitrium patens HOM05D005840 ORTHO05D007144 4.4e-36 156.0 233 40.3
COL.COLO4_12096 Corchorus olitorius HOM05D005840 ORTHO05D007144 3.8e-35 152.9 174 50.6
Mapoly0031s0111 Marchantia polymorpha HOM05D005840 ORTHO05D007144 3.8e-35 152.9 213 40.4
SMO140G0013 Selaginella moellendorffii HOM05D005840 ORTHO05D007144 6.4e-35 152.1 212 41.5
BcaNung02020 Brassica carinata HOM05D005840 ORTHO05D007144 4.2e-34 149.4 126 58.7
CBR_g20004 Chara braunii HOM05D005840 ORTHO05D007144 1.1e-31 141.4 179 44.7
BcaB04g19822 Brassica carinata HOM05D005840 ORTHO05D007144 3.8e-27 126.3 121 57.0
Gohir.D08G116401 Gossypium hirsutum HOM05D005840 ORTHO05D007144 2.4e-26 123.6 113 56.6
Duzib114G0266 Durio zibethinus HOM05D005840 ORTHO05D007144 7.3e-23 112.1 145 45.5
MCO06G087 Micromonas commoda HOM05D005840 ORTHO05D007144 2.0e-20 104.0 166 39.2
SalBow4G0698 Salvia bowleyana HOM05D001856 ORTHO05D007144 8.4e-19 98.6 75 61.3
CAN.G2.4 Capsicum annuum HOM05D005840 ORTHO05D007144 1.1e-18 98.2 78 59.0
SalBow6G2140 Salvia bowleyana HOM05D005840 ORTHO05D007144 1.0e-16 91.7 50 74.0
Cre01.g012300 Chlamydomonas reinhardtii HOM05D005840 ORTHO05D007144 2.5e-15 87.0 143 36.4
COL.COLO4_35602 Corchorus olitorius HOM05D005840 ORTHO05D007144 8.1e-14 82.0 87 46.0
Potri.010G149800 Populus trichocarpa HOM05D005840 ORTHO05D007144 1.1e-10 71.6 73 50.7


User provided reference genes

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