Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.014G197400 Populus trichocarpa HOM05D007796 ORTHO05D009853 1.8e-31 138.7 70 100.0
Manes.12G058902 Manihot esculenta HOM05D007796 ORTHO05D009853 3.9e-15 84.3 62 67.7
Manes.13G057800 Manihot esculenta HOM05D007796 ORTHO05D009853 5.2e-15 84.0 62 66.1
CANSAT35G1173 Cannabis sativa HOM05D007796 ORTHO05D009853 3.3e-14 81.3 69 59.4
Thecc.01G204800 Theobroma cacao HOM05D007796 ORTHO05D009853 3.3e-14 81.3 70 60.0
TWI36G1414 Tripterygium wilfordii HOM05D007796 ORTHO05D009853 1.7e-13 79.0 62 61.3
Gohir.D07G093800 Gossypium hirsutum HOM05D007796 ORTHO05D009853 8.2e-13 76.6 70 58.6
Gorai.001G100500 Gossypium raimondii HOM05D007796 ORTHO05D009853 8.2e-13 76.6 70 58.6
Atru.chr6.3486 Acer truncatum HOM05D007796 ORTHO05D009853 1.1e-12 76.3 55 63.6
Gohir.A07G088800 Gossypium hirsutum HOM05D007796 ORTHO05D009853 1.1e-12 76.3 70 58.6
Ciclev10018341m.g Citrus clementina HOM05D007796 ORTHO05D009853 4.1e-12 74.3 55 65.5
COL.COLO4_04515 Corchorus olitorius HOM05D007796 ORTHO05D009853 5.3e-12 73.9 62 59.7
THA.LOC104822455 Tarenaya hassleriana HOM05D007796 ORTHO05D009853 2.0e-11 72.0 71 52.1
Aa31LG5G18120 Aethionema arabicum HOM05D007796 ORTHO05D009853 2.6e-11 71.6 60 56.7
PGR083G0658 Punica granatum HOM05D007796 ORTHO05D009853 2.6e-11 71.6 70 55.7
Haze_03600 Corylus avellana HOM05D007796 ORTHO05D009853 3.5e-11 71.2 63 57.1
Cfa010674 Carpinus fangiana HOM05D005998 ORTHO05D007664 4.5e-11 70.9 63 58.7
MD16G1238500 Malus domestica HOM05D007796 ORTHO05D009853 4.5e-11 70.9 71 52.1
Eucgr.H00678 Eucalyptus grandis HOM05D007796 ORTHO05D009853 5.9e-11 70.5 67 53.7
CiPaw.13G057300 Carya illinoinensis HOM05D007796 ORTHO05D009853 7.7e-11 70.1 70 54.3
Carub.0003s0713 Capsella rubella HOM05D007796 ORTHO05D009853 1.0e-10 69.7 70 52.9
AL3G18920 Arabidopsis lyrata HOM05D007796 ORTHO05D009853 1.3e-10 69.3 70 52.9
Medtr8g028085 Medicago truncatula HOM05D007796 ORTHO05D009853 1.3e-10 69.3 55 54.5
MELO3C012717.2 Cucumis melo HOM05D007796 ORTHO05D009853 1.7e-10 68.9 61 55.7
AT3G07568 Arabidopsis thaliana HOM05D007796 ORTHO05D009853 2.2e-10 68.6 70 51.4
Lsat_1_v5_gn_2_38801 Lactuca sativa HOM05D007796 ORTHO05D009853 2.9e-10 68.2 59 54.2
MD13G1233500 Malus domestica HOM05D007796 ORTHO05D009853 2.9e-10 68.2 71 50.7
TPR.G5064 Trifolium pratense HOM05D007796 ORTHO05D009853 2.9e-10 68.2 62 50.0
C05p59740 Brassica napus HOM05D007796 ORTHO05D009853 3.8e-10 67.8 60 51.7
Cpa.g.sc8.20 Carica papaya HOM05D007796 ORTHO05D009853 3.8e-10 67.8 55 63.6
A05p40630 Brassica napus HOM05D007796 ORTHO05D009853 5.0e-10 67.4 60 51.7
BraA05t22794Z Brassica rapa HOM05D007796 ORTHO05D009853 5.0e-10 67.4 60 51.7
DCAR_005469 Daucus carota HOM05D007796 ORTHO05D009853 6.5e-10 67.0 66 51.5
BcaC05g29552 Brassica carinata HOM05D000328 ORTHO05D000191 8.5e-10 66.6 55 54.5
BolC5t34628H Brassica oleracea HOM05D007796 ORTHO05D009853 8.5e-10 66.6 55 54.5
CARHR082260 Cardamine hirsuta HOM05D007796 ORTHO05D009853 8.5e-10 66.6 70 50.0
Ca_23572_v3 Cicer arietinum L. HOM05D007796 ORTHO05D009853 8.5e-10 66.6 57 52.6
Ca_23581_v3 Cicer arietinum L. HOM05D007796 ORTHO05D009853 8.5e-10 66.6 57 52.6
Thhalv10021850m.g Eutrema salsugineum HOM05D007796 ORTHO05D009853 8.5e-10 66.6 55 54.5
Hma1.2p1_0487F.1_g163590 Hydrangea macrophylla HOM05D007796 ORTHO05D009853 1.1e-09 66.2 60 53.3
Lj3g0021991 Lotus japonicus HOM05D007796 ORTHO05D009853 1.1e-09 66.2 70 44.3
Sp3g06500 Schrenkiella parvula HOM05D007796 ORTHO05D009853 1.1e-09 66.2 60 51.7
Nn7g37568 Nelumbo nucifera HOM05D007796 ORTHO05D009853 1.5e-09 65.9 57 57.9
Psat4g158920 Pisum sativum HOM05D007796 ORTHO05D009853 1.5e-09 65.9 68 48.5
Actinidia27090 Actinidia chinensis HOM05D007796 ORTHO05D009853 3.2e-09 64.7 54 57.4
EL10Ac3g06021 Beta vulgaris HOM05D007796 ORTHO05D009853 1.6e-08 62.4 69 47.8
CsaV3_7G027090 Cucumis sativus L. HOM05D007796 ORTHO05D009853 1.6e-08 62.4 64 53.1
vmacro00674 Vaccinium macrocarpon HOM05D007796 ORTHO05D009853 1.6e-08 62.4 66 45.5
FAN07G1080 Fragaria x ananassa HOM05D007796 ORTHO05D009853 2.1e-08 62.0 70 50.0
Oeu022686.1 Olea europaea HOM05D007796 ORTHO05D009853 2.1e-08 62.0 58 46.6
FvH4_4g06110 Fragaria vesca HOM05D007796 ORTHO05D009853 2.7e-08 61.6 70 50.0
FAN12G2913 Fragaria x ananassa HOM05D007796 ORTHO05D009853 2.7e-08 61.6 70 50.0
FAN17G0402 Fragaria x ananassa HOM05D007796 ORTHO05D009853 2.7e-08 61.6 70 50.0
Prupe.1G064700 Prunus persica HOM05D007796 ORTHO05D009853 2.7e-08 61.6 67 49.3
RcHm_v2.0_Chr4g0397691 Rosa chinensis HOM05D007796 ORTHO05D009853 2.7e-08 61.6 70 50.0
Rhsim09G0018700 Rhododendron simsii HOM05D007796 ORTHO05D009853 3.6e-08 61.2 61 45.9
QL09p048026 Quercus lobata HOM05D007796 ORTHO05D009853 4.7e-08 60.8 62 54.8
FAN22G0383 Fragaria x ananassa HOM05D007796 ORTHO05D009853 8.0e-08 60.1 70 48.6
CiPaw.14G044700 Carya illinoinensis HOM05D007796 ORTHO05D009853 1.0e-07 59.7 63 52.4
arahy.Tifrunner.gnm1.ann1.M2QILT Arachis hypogaea HOM05D007796 ORTHO05D009853 1.4e-07 59.3 68 45.6
Rhsim09G0019400 Rhododendron simsii HOM05D007796 ORTHO05D009853 1.4e-07 59.3 61 44.3
Rhsim09G0019700 Rhododendron simsii HOM05D007796 ORTHO05D009853 1.4e-07 59.3 61 44.3
CSS0002213 Camellia sinensis var. sinensis HOM05D007796 ORTHO05D009853 1.8e-07 58.9 61 45.9
CSS0009025 Camellia sinensis var. sinensis HOM05D007796 ORTHO05D009853 1.8e-07 58.9 61 45.9
GSVIVG01004106001 Vitis vinifera HOM05D007796 ORTHO05D009853 1.8e-07 58.9 68 48.5
Sed0024779 Sechium edule HOM05D007796 ORTHO05D009853 2.3e-07 58.5 64 53.1
unitig_0.g2392 Utricularia gibba HOM05D007796 ORTHO05D009853 4.0e-07 57.8 69 37.7
PSO017G5834 Papaver somniferum HOM05D007796 ORTHO05D009853 5.2e-07 57.4 62 46.8
Sopen08g004900 Solanum pennellii HOM05D007796 ORTHO05D009853 8.8e-07 56.6 55 50.9
MSTRG.9748 Avicennia marina HOM05D007796 ORTHO05D009853 1.5e-06 55.8 70 40.0
Lalb_Chr17g0342271 Lupinus albus HOM05D007796 ORTHO05D009853 1.5e-06 55.8 58 44.8
SHI10202 Sapria himalayana HOM05D007796 ORTHO05D009853 5.7e-06 53.9 37 67.6
Glyma.07G059400 Glycine max HOM05D007796 ORTHO05D009853 7.5e-06 53.5 57 45.6
MBI07_g07943_MAGBIO Magnolia biondii HOM05D007796 ORTHO05D009853 7.5e-06 53.5 81 38.3
SalBow2G2954 Salvia bowleyana HOM05D007796 ORTHO05D009853 7.5e-06 53.5 71 40.8
HanXRQChr12g0382011 Helianthus annuus HOM05D007796 ORTHO05D009853 9.7e-06 53.1 59 44.1


User provided reference genes

Program Settings