Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.014G197200 Populus trichocarpa HOM05D003822 ORTHO05D004484 6.9e-120 434.5 309 100.0
Sabra14G0133100 Salix brachista HOM05D003822 ORTHO05D004484 3.0e-99 365.9 316 71.5
Manes.13G057600 Manihot esculenta HOM05D003822 ORTHO05D004484 2.1e-84 316.6 304 68.1
Gorai.007G162100 Gossypium raimondii HOM05D003822 ORTHO05D004484 3.0e-83 312.8 308 64.3
Manes.12G058903 Manihot esculenta HOM05D003822 ORTHO05D004484 6.7e-83 311.6 307 74.6
Gohir.D11G153200 Gossypium hirsutum HOM05D003822 ORTHO05D004484 8.8e-83 311.2 308 64.0
Hma1.2p1_0635F.1_g193140 Hydrangea macrophylla HOM05D003822 ORTHO05D004484 2.5e-82 309.7 312 66.7
Gohir.A11G145000 Gossypium hirsutum HOM05D003822 ORTHO05D004484 7.4e-82 308.1 308 63.6
Hma1.2p1_2403F.1_g321420 Hydrangea macrophylla HOM05D003822 ORTHO05D004484 9.7e-82 307.8 311 67.5
Manes.12G057507 Manihot esculenta HOM05D003822 ORTHO05D004484 2.8e-81 306.2 303 72.9
Manes.12G057905 Manihot esculenta HOM05D003822 ORTHO05D004484 2.8e-81 306.2 303 72.9
TWI18G0659 Tripterygium wilfordii HOM05D003822 ORTHO05D004484 1.2e-79 300.8 304 67.1
Ciclev10016105m.g Citrus clementina HOM05D003822 ORTHO05D004484 3.4e-79 299.3 312 72.4
Thecc.01G205200 Theobroma cacao HOM05D003822 ORTHO05D004484 1.4e-77 293.9 310 66.1
TWI36G1391 Tripterygium wilfordii HOM05D003822 ORTHO05D004484 1.2e-76 290.8 304 61.8
TWI36G1709 Tripterygium wilfordii HOM05D003822 ORTHO05D004484 1.2e-76 290.8 304 61.8
Peaxi162Scf00995g00322 Petunia axillaris HOM05D003822 ORTHO05D004484 1.6e-76 290.4 312 63.1
QL10p052081 Quercus lobata HOM05D003822 ORTHO05D004484 3.6e-76 289.3 310 65.5
Duzib211G0255 Durio zibethinus HOM05D003822 ORTHO05D004484 4.7e-76 288.9 310 66.8
Nn7g37555 Nelumbo nucifera HOM05D003822 ORTHO05D004484 7.9e-76 288.1 309 59.9
TPR.G6564 Trifolium pratense HOM05D003822 ORTHO05D004484 5.1e-75 285.4 307 60.9
TAR362G1102 Trochodendron aralioides HOM05D003822 ORTHO05D004484 5.1e-75 285.4 305 64.6
Duzib133G0954 Durio zibethinus HOM05D003822 ORTHO05D004484 2.6e-74 283.1 309 67.0
VMungo1080G0920 Vigna mungo HOM05D003822 ORTHO05D004484 2.6e-74 283.1 306 63.4
CiPaw.02G103400 Carya illinoinensis HOM05D003822 ORTHO05D004484 9.7e-74 281.2 312 67.3
Actinidia23132 Actinidia chinensis HOM05D003822 ORTHO05D004484 1.7e-73 280.4 310 55.8
Oeu013421.2 Olea europaea HOM05D003822 ORTHO05D004484 2.2e-73 280.0 302 65.9
Actinidia34522 Actinidia chinensis HOM05D003822 ORTHO05D004484 2.8e-73 279.6 313 67.7
TAR633G2284 Trochodendron aralioides HOM05D003822 ORTHO05D004484 1.4e-72 277.3 300 64.7
Solyc06g007700.4 Solanum lycopersicum HOM05D003822 ORTHO05D004484 7.0e-72 275.0 311 63.3
Cc02_g30690 Coffea canephora HOM05D003822 ORTHO05D004484 9.1e-72 274.6 313 61.7
Eucgr.H00681 Eucalyptus grandis HOM05D003822 ORTHO05D004484 1.2e-71 274.2 310 66.5
Glyma.15G027800 Glycine max HOM05D003822 ORTHO05D004484 1.2e-71 274.2 308 60.7
COL.COLO4_29926 Corchorus olitorius HOM05D003822 ORTHO05D004484 2.0e-71 273.5 317 59.3
vmacro14674 Vaccinium macrocarpon HOM05D003822 ORTHO05D004484 2.0e-71 273.5 300 61.7
THA.LOC104819024 Tarenaya hassleriana HOM05D003822 ORTHO05D004484 3.5e-71 272.7 313 68.1
Cpa.g.sc8.23 Carica papaya HOM05D003822 ORTHO05D004484 5.9e-71 271.9 311 66.9
Nitab4.5_0003952g0050 Nicotiana tabacum HOM05D003822 ORTHO05D004484 5.9e-71 271.9 317 61.8
Glyma.13G346400 Glycine max HOM05D003822 ORTHO05D004484 7.7e-71 271.6 312 59.6
Nn1g09539 Nelumbo nucifera HOM05D003822 ORTHO05D004484 1.0e-70 271.2 304 63.5
Nitab4.5_0002641g0020 Nicotiana tabacum HOM05D003822 ORTHO05D004484 1.0e-70 271.2 316 64.2
Peaxi162Scf00372g00722 Petunia axillaris HOM05D003822 ORTHO05D004484 1.0e-70 271.2 311 66.6
Cfa015215 Carpinus fangiana HOM05D003822 ORTHO05D004484 1.3e-70 270.8 305 66.9
Ca_01239_v3 Cicer arietinum L. HOM05D003822 ORTHO05D004484 1.3e-70 270.8 303 65.3
Atru.chr6.3488 Acer truncatum HOM05D003822 ORTHO05D004484 2.9e-70 269.6 317 71.6
arahy.Tifrunner.gnm1.ann1.0NAL6S Arachis hypogaea HOM05D003822 ORTHO05D004484 2.9e-70 269.6 312 69.2
arahy.Tifrunner.gnm1.ann1.1KAH27 Arachis hypogaea HOM05D003822 ORTHO05D004484 2.9e-70 269.6 312 69.6
Sopen06g002590 Solanum pennellii HOM05D003822 ORTHO05D004484 2.9e-70 269.6 316 67.7
Duzib138G1354 Durio zibethinus HOM05D003822 ORTHO05D004484 6.5e-70 268.5 310 68.7
MSTRG.17947 Avicennia marina HOM05D003822 ORTHO05D004484 8.5e-70 268.1 311 58.8
Lalb_Chr24g0396641 Lupinus albus HOM05D003822 ORTHO05D004484 8.5e-70 268.1 322 63.4
CiPaw.01G173700 Carya illinoinensis HOM05D003822 ORTHO05D004484 1.1e-69 267.7 306 69.9
Dinv28779 Davidia involucrata HOM05D003822 ORTHO05D004484 1.9e-69 266.9 285 72.3
Glyma.11G125400 Glycine max HOM05D003822 ORTHO05D004484 2.5e-69 266.5 300 56.0
Eucgr.A00039 Eucalyptus grandis HOM05D003822 ORTHO05D004484 9.4e-69 264.6 313 57.5
PSO017G3256 Papaver somniferum HOM05D003822 ORTHO05D004484 9.4e-69 264.6 316 66.5
PGSC0003DMG400020658 Solanum tuberosum HOM05D003822 ORTHO05D004484 2.1e-68 263.5 312 66.3
TAR365G1107 Trochodendron aralioides HOM05D003822 ORTHO05D004484 2.1e-68 263.5 287 67.6
Haze_01421 Corylus avellana HOM05D003822 ORTHO05D004484 3.6e-68 262.7 304 64.1
Medtr2g099360 Medicago truncatula HOM05D003822 ORTHO05D004484 1.0e-67 261.2 319 63.0
PSO837G0022 Papaver somniferum HOM05D003822 ORTHO05D004484 1.0e-67 261.2 316 66.1
Lalb_Chr22g0352031 Lupinus albus HOM05D003822 ORTHO05D004484 1.4e-67 260.8 303 58.1
THA.LOC104822456 Tarenaya hassleriana HOM05D003822 ORTHO05D004484 1.4e-67 260.8 308 61.0
Potri.017G018400 Populus trichocarpa HOM05D003822 ORTHO05D004484 1.8e-67 260.4 307 63.2
Prupe.1G200400 Prunus persica HOM05D003822 ORTHO05D004484 1.8e-67 260.4 313 62.9
Sabra17G0014400 Salix brachista HOM05D000455 ORTHO05D000434 2.3e-67 260.0 297 67.7
SGA_v2.0_scaffold77G25327 Striga asiatica HOM05D003822 ORTHO05D004484 2.3e-67 260.0 305 57.0
Ciclev10021425m.g Citrus clementina HOM05D003822 ORTHO05D004484 3.0e-67 259.6 305 65.9
VMungo1127G1572 Vigna mungo HOM05D003822 ORTHO05D004484 1.1e-66 257.7 298 54.0
Sed0021377 Sechium edule HOM05D003822 ORTHO05D004484 1.5e-66 257.3 308 64.6
EL10Ac3g06027 Beta vulgaris HOM05D003822 ORTHO05D004484 7.5e-66 255.0 310 65.2
Sed0005976 Sechium edule HOM05D003822 ORTHO05D004484 7.5e-66 255.0 308 66.9
HanXRQChr10g0281191 Helianthus annuus HOM05D003822 ORTHO05D004484 1.3e-65 254.2 304 54.3
CsaV3_4G002560 Cucumis sativus L. HOM05D003822 ORTHO05D004484 2.8e-65 253.1 308 73.4
Lsat_1_v5_gn_8_98601 Lactuca sativa HOM05D003822 ORTHO05D004484 4.8e-65 252.3 307 64.2
FAN08G2486 Fragaria x ananassa HOM05D003822 ORTHO05D004484 8.2e-65 251.5 307 56.7
AT3G07560 Arabidopsis thaliana HOM05D003822 ORTHO05D004484 1.8e-64 250.4 308 60.7
Carub.0003s0711 Capsella rubella HOM05D003822 ORTHO05D004484 1.8e-64 250.4 320 59.1
Ah.07g202460 Amaranthus hybridus HOM05D003822 ORTHO05D004484 2.4e-64 250.0 311 54.7
Sc19g0002790 Simmondsia chinensis HOM05D003822 ORTHO05D004484 2.4e-64 250.0 305 59.7
PGR083G0513 Punica granatum HOM05D003822 ORTHO05D004484 4.1e-64 249.2 308 63.3
AL3G18900 Arabidopsis lyrata HOM05D003822 ORTHO05D004484 5.3e-64 248.8 307 59.9
Sabra07G0108500 Salix brachista HOM05D003822 ORTHO05D004484 7.0e-64 248.4 306 58.2
Sabra07G0120800 Salix brachista HOM05D003822 ORTHO05D004484 7.0e-64 248.4 306 58.2
BcaB03g14694 Brassica carinata HOM05D003822 ORTHO05D004484 1.2e-63 247.7 303 65.3
Lj3g0026330 Lotus japonicus HOM05D003822 ORTHO05D004484 2.0e-63 246.9 316 68.7
MELO3C017788.2 Cucumis melo HOM05D003822 ORTHO05D004484 3.5e-63 246.1 304 61.8
ECA236G4570 Erigeron canadensis HOM05D003822 ORTHO05D004484 3.5e-63 246.1 306 59.2
Lj3g0024368 Lotus japonicus HOM05D003822 ORTHO05D004484 3.5e-63 246.1 300 62.7
MD04G1046700 Malus domestica HOM05D003822 ORTHO05D004484 3.5e-63 246.1 312 59.6
CANSAT11G1915 Cannabis sativa HOM05D003822 ORTHO05D004484 4.5e-63 245.7 319 71.8
Hund03185 Selenicereus undatus HOM05D003822 ORTHO05D004484 1.7e-62 243.8 306 52.3
Aa31LG5G18100 Aethionema arabicum HOM05D003822 ORTHO05D004484 2.9e-62 243.0 307 61.9
FvH4_5g32960 Fragaria vesca HOM05D003822 ORTHO05D004484 3.8e-62 242.7 314 62.4
Thhalv10021215m.g Eutrema salsugineum HOM05D003822 ORTHO05D004484 6.5e-62 241.9 306 56.9
RcHm_v2.0_Chr7g0230961 Rosa chinensis HOM05D003822 ORTHO05D004484 6.5e-62 241.9 311 57.9
unitig_22.g5196 Utricularia gibba HOM05D003822 ORTHO05D004484 6.5e-62 241.9 293 57.0
CANSAT56G4141 Cannabis sativa HOM05D003822 ORTHO05D004484 8.5e-62 241.5 321 66.4
BraA05t22796Z Brassica rapa HOM05D003822 ORTHO05D004484 1.5e-61 240.7 307 57.3
FAN18G3379 Fragaria x ananassa HOM05D003822 ORTHO05D004484 1.9e-61 240.4 321 57.9
Sabra17G0002300 Salix brachista HOM05D000455 ORTHO05D000434 2.5e-61 240.0 344 58.4
AUR62002363 Chenopodium quinoa HOM05D003822 ORTHO05D004484 3.2e-61 239.6 303 61.4
Phvul.005G155400 Phaseolus vulgaris HOM05D003822 ORTHO05D004484 5.5e-61 238.8 306 58.5
A05p40650 Brassica napus HOM05D003822 ORTHO05D004484 9.4e-61 238.0 299 57.9
Sp3g06480 Schrenkiella parvula HOM05D003822 ORTHO05D004484 9.4e-61 238.0 315 57.5
C03p42940 Brassica napus HOM05D003822 ORTHO05D004484 2.1e-60 236.9 302 59.6
FAN04G1289 Fragaria x ananassa HOM05D003822 ORTHO05D004484 2.1e-60 236.9 311 58.5
Aqoxy2G04159 Aquilegia oxysepala HOM05D003822 ORTHO05D004484 2.7e-60 236.5 300 60.7
BolC3t16562H Brassica oleracea HOM05D003822 ORTHO05D004484 3.6e-60 236.1 302 68.9
HanXRQChr01g0010521 Helianthus annuus HOM05D003822 ORTHO05D004484 4.7e-60 235.7 303 61.4
A03p35330 Brassica napus HOM05D003822 ORTHO05D004484 1.8e-59 233.8 300 65.0
BcaC01g04277 Brassica carinata HOM05D003822 ORTHO05D004484 4.0e-59 232.6 300 59.3
BolC5t34630H Brassica oleracea HOM05D003822 ORTHO05D004484 8.8e-59 231.5 313 59.1
MD00G1127600 Malus domestica HOM05D003822 ORTHO05D004484 8.8e-59 231.5 299 57.9
CSS0026869 Camellia sinensis var. sinensis HOM05D003822 ORTHO05D004484 1.5e-58 230.7 298 62.8
HPP92_015668 Vanilla planifolia HOM05D003822 ORTHO05D004484 1.5e-58 230.7 303 59.7
CAN.G181.49 Capsicum annuum HOM05D003822 ORTHO05D004484 3.4e-58 229.6 320 60.9
ECA248G1190 Erigeron canadensis HOM05D002050 ORTHO05D001949 4.4e-58 229.2 299 47.2
C05p59760 Brassica napus HOM05D003822 ORTHO05D004484 8.3e-57 224.9 303 54.1
RcHm_v2.0_Chr1g0340971 Rosa chinensis HOM05D003822 ORTHO05D004484 1.8e-56 223.8 315 47.9
PGR102G0947 Punica granatum HOM05D003822 ORTHO05D004484 4.1e-56 222.6 319 53.9
CDE05G3137 Ceratophyllum demersum HOM05D003822 ORTHO05D004484 5.9e-55 218.8 297 57.2
CDE02G4798 Ceratophyllum demersum HOM05D003822 ORTHO05D004484 1.7e-54 217.2 309 56.3
Migut.N00690 Erythranthe guttata HOM05D003822 ORTHO05D004484 1.9e-53 213.8 318 67.0
ClCG07G011660 Citrullus lanatus HOM05D003822 ORTHO05D004484 4.2e-53 212.6 390 45.9
BcaC05g29550 Brassica carinata HOM05D003822 ORTHO05D004484 3.6e-52 209.5 298 52.3
MBI02_g24302_MAGBIO Magnolia biondii HOM05D003822 ORTHO05D004484 2.3e-51 206.8 302 54.6
Oeu020438.1 Olea europaea HOM05D003822 ORTHO05D004484 5.2e-51 205.7 132 75.0
Os03g0786000 Oryza sativa ssp. japonica HOM05D003822 ORTHO05D004484 5.2e-51 205.7 297 53.5
CSS0006211 Camellia sinensis var. sinensis HOM05D003822 ORTHO05D004484 1.2e-50 204.5 131 74.0
Os07g0152800 Oryza sativa ssp. japonica HOM05D003822 ORTHO05D004484 2.0e-50 203.8 297 57.2
PGSC0003DMG400020552 Solanum tuberosum HOM05D003822 ORTHO05D004484 2.6e-50 203.4 131 72.5
Zm00001eb117520 Zea mays HOM05D003822 ORTHO05D004484 2.6e-50 203.4 300 51.7
ATR0752G090 Amborella trichopoda HOM05D003822 ORTHO05D004484 3.4e-50 203.0 292 55.8
BcaB04g21287 Brassica carinata HOM05D003822 ORTHO05D004484 4.4e-50 202.6 310 47.7
Phvul.011G052000 Phaseolus vulgaris HOM05D003822 ORTHO05D004484 1.7e-49 200.7 126 73.0
Manes.11G127100 Manihot esculenta HOM05D003822 ORTHO05D004484 2.4e-48 196.8 268 54.1
Zm00001eb059960 Zea mays HOM05D003822 ORTHO05D004484 2.4e-48 196.8 303 50.8
Lsat_1_v5_gn_5_175601 Lactuca sativa HOM05D003822 ORTHO05D004484 2.7e-47 193.4 310 51.0
AUR62023822 Chenopodium quinoa HOM05D003822 ORTHO05D004484 3.8e-46 189.5 306 49.7
Actinidia11655 Actinidia chinensis HOM05D003822 ORTHO05D004484 4.3e-45 186.0 127 71.7
BraA01t04376Z Brassica rapa HOM05D003822 ORTHO05D004484 2.1e-44 183.7 137 65.0
Manes.12G058104 Manihot esculenta HOM05D003822 ORTHO05D004484 4.7e-44 182.6 101 85.1
BolC1t05546H Brassica oleracea HOM05D003822 ORTHO05D004484 5.2e-43 179.1 138 63.0
Lj2C1109G11 Lonicera japonica HOM05D003822 ORTHO05D004484 4.4e-42 176.0 300 54.7
SGA_v2.0_scaffold95G28678 Striga asiatica HOM05D003822 ORTHO05D004484 9.8e-42 174.9 238 55.5
SEGI_01562 Sequoiadendron giganteum HOM05D003822 ORTHO05D004484 4.1e-40 169.5 292 48.6
Psat5g291600 Pisum sativum HOM05D003822 ORTHO05D004484 7.0e-40 168.7 241 70.1
Gorai.N001500 Gossypium raimondii HOM05D003822 ORTHO05D004484 8.6e-38 161.8 305 48.2
MBI18_g24478_MAGBIO Magnolia biondii HOM05D003822 ORTHO05D004484 1.9e-37 160.6 291 46.7
SEGI_07594 Sequoiadendron giganteum HOM05D003822 ORTHO05D004484 1.6e-36 157.5 302 44.7
MSTRG.12731 Avicennia marina HOM05D003822 ORTHO05D004484 2.7e-31 140.2 99 64.6
AagrBONN_evm.TU.Sc2ySwM_368.3329 Anthoceros agrestis HOM05D003822 ORTHO05D004484 1.5e-29 134.4 309 53.1
Pp3c11_19790 Physcomitrium patens HOM05D003822 ORTHO05D004484 1.3e-25 121.3 322 47.5
MSTRG.12733 Avicennia marina HOM05D003822 ORTHO05D004484 2.9e-25 120.2 216 47.7
FAN01G1095 Fragaria x ananassa HOM05D003822 ORTHO05D004484 3.7e-25 119.8 119 53.8
CSS0030404 Camellia sinensis var. sinensis HOM05D003822 ORTHO05D004484 6.4e-25 119.0 90 70.0
Mapoly0080s0067 Marchantia polymorpha HOM05D003822 ORTHO05D004484 3.2e-24 116.7 342 47.7
SMO146G0020 Selaginella moellendorffii HOM05D003822 ORTHO05D004484 4.1e-24 116.3 307 41.7
unitig_8.g3681 Utricularia gibba HOM05D003822 ORTHO05D004484 4.1e-24 116.3 91 64.8
Hma1.2p1_0161F.1_g071790 Hydrangea macrophylla HOM05D003822 ORTHO05D004484 7.8e-23 112.1 148 45.3
CBR_g38951 Chara braunii HOM05D003822 ORTHO05D004484 1.3e-22 111.3 327 49.2
Oeu020439.1 Olea europaea HOM05D003822 ORTHO05D004484 4.3e-21 106.3 80 70.0
CARHR082220 Cardamine hirsuta HOM05D003822 ORTHO05D004484 2.8e-20 103.6 73 68.5
Thecc.04G171800 Theobroma cacao HOM05D003822 ORTHO05D004484 1.8e-19 100.9 69 68.1
CARHR082240 Cardamine hirsuta HOM05D003822 ORTHO05D004484 9.9e-18 95.1 196 65.8
Atru.chr4.1339 Acer truncatum HOM05D003822 ORTHO05D004484 3.8e-17 93.2 88 60.2
FAN06G0586 Fragaria x ananassa HOM05D003822 ORTHO05D004484 4.9e-17 92.8 105 55.2
MCO15G241 Micromonas commoda HOM05D003822 ORTHO05D004484 8.4e-17 92.0 101 50.5
Cre13.g574700 Chlamydomonas reinhardtii HOM05D003822 ORTHO05D004484 2.1e-15 87.4 64 62.5
Eucgr.C02476 Eucalyptus grandis HOM05D003822 ORTHO05D004484 6.6e-14 82.4 64 70.3
FAN10G3558 Fragaria x ananassa HOM05D003822 ORTHO05D046505 8.6e-14 82.0 81 59.3
Eucgr.B03613 Eucalyptus grandis HOM05D003822 ORTHO05D004484 3.3e-13 80.1 77 59.7
FvH4_7g08180 Fragaria vesca HOM05D003822 ORTHO05D046505 5.6e-13 79.3 77 62.3
Gohir.A07G157900 Gossypium hirsutum HOM05D003822 ORTHO05D004484 7.3e-13 79.0 93 52.7
FAN01G2016 Fragaria x ananassa HOM05D003822 ORTHO05D004484 1.7e-09 67.8 46 80.4
ATR0737G020 Amborella trichopoda HOM05D003822 ORTHO05D004484 7.1e-08 62.4 69 52.2
CBR_g50337 Chara braunii HOM05D003822 ORTHO05D004484 1.2e-07 61.6 267 54.3
SEGI_40649 Sequoiadendron giganteum HOM05D003822 ORTHO05D004484 8.7e-06 55.5 78 50.0


User provided reference genes

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