Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.014G195500 Populus trichocarpa HOM05D004940 ORTHO05D007805 0.0e+00 1356.3 636 100.0
Sabra14G0144700 Salix brachista HOM05D004940 ORTHO05D007805 0.0e+00 1307.4 636 96.4
TWI12G0664 Tripterygium wilfordii HOM05D004940 ORTHO05D007805 0.0e+00 1186.8 633 85.9
Thecc.01G253300 Theobroma cacao HOM05D004940 ORTHO05D007805 0.0e+00 1181.8 609 88.7
GSVIVG01028386001 Vitis vinifera HOM05D004940 ORTHO05D007805 0.0e+00 1175.2 630 85.9
Cpa.g.sc165.41 Carica papaya HOM05D004940 ORTHO05D007805 0.0e+00 1166.8 627 86.1
Manes.12G035200 Manihot esculenta HOM05D004940 ORTHO05D007805 0.0e+00 1165.2 610 87.7
Actinidia37536 Actinidia chinensis HOM05D004940 ORTHO05D007805 0.0e+00 1161.7 657 81.6
RcHm_v2.0_Chr6g0287291 Rosa chinensis HOM05D004940 ORTHO05D007805 0.0e+00 1157.5 634 83.8
vmacro02697 Vaccinium macrocarpon HOM05D004940 ORTHO05D007805 0.0e+00 1154.4 637 82.1
Gorai.004G057300 Gossypium raimondii HOM05D004940 ORTHO05D007805 0.0e+00 1153.7 609 87.4
Gohir.D08G056200 Gossypium hirsutum HOM05D004940 ORTHO05D007805 0.0e+00 1151.7 609 87.2
Cc01_g18010 Coffea canephora HOM05D004940 ORTHO05D007805 0.0e+00 1150.6 609 86.0
CiPaw.03G268400 Carya illinoinensis HOM05D004940 ORTHO05D007805 0.0e+00 1149.8 629 84.4
MD10G1178900 Malus domestica HOM05D004940 ORTHO05D007805 0.0e+00 1149.0 634 83.0
TAR362G0048 Trochodendron aralioides HOM05D004940 ORTHO05D007805 0.0e+00 1149.0 636 82.7
arahy.Tifrunner.gnm1.ann1.N1VHSE Arachis hypogaea HOM05D004940 ORTHO05D007805 0.0e+00 1147.9 629 82.5
Sc24g0003690 Simmondsia chinensis HOM05D004940 ORTHO05D007805 0.0e+00 1146.7 636 82.5
Ciclev10019263m.g Citrus clementina HOM05D004940 ORTHO05D007805 0.0e+00 1142.1 630 82.7
FAN27G1261 Fragaria x ananassa HOM05D004940 ORTHO05D007805 0.0e+00 1140.2 632 82.8
Glyma.19G166800 Glycine max HOM05D004940 ORTHO05D007805 0.0e+00 1139.8 624 83.5
Lj1g0003710 Lotus japonicus HOM05D004940 ORTHO05D007805 0.0e+00 1139.4 604 85.4
Aqoxy5G00176 Aquilegia oxysepala HOM05D004940 ORTHO05D007805 0.0e+00 1139.0 631 81.8
CANSAT01G2138 Cannabis sativa HOM05D004940 ORTHO05D007805 0.0e+00 1137.9 625 83.8
CAN.G1270.3 Capsicum annuum HOM05D004940 ORTHO05D007805 0.0e+00 1137.5 636 82.4
PGR031G0691 Punica granatum HOM05D004940 ORTHO05D007805 0.0e+00 1134.0 601 86.0
MD05G1192400 Malus domestica HOM05D004940 ORTHO05D007805 0.0e+00 1133.2 632 81.8
FvH4_2g20890 Fragaria vesca HOM05D004940 ORTHO05D007805 0.0e+00 1132.1 632 82.3
arahy.Tifrunner.gnm1.ann1.YK26R7 Arachis hypogaea HOM05D004940 ORTHO05D007805 0.0e+00 1131.3 629 81.7
Medtr7g098010 Medicago truncatula HOM05D004940 ORTHO05D007805 0.0e+00 1129.4 604 84.9
Sopen09g028520 Solanum pennellii HOM05D004940 ORTHO05D007805 0.0e+00 1129.4 636 81.0
MSTRG.18341 Avicennia marina HOM05D004940 ORTHO05D007805 0.0e+00 1127.9 634 81.4
Eucgr.A01366 Eucalyptus grandis HOM05D004940 ORTHO05D007805 0.0e+00 1127.5 601 85.4
Phvul.001G163200 Phaseolus vulgaris HOM05D004940 ORTHO05D007805 0.0e+00 1127.5 627 82.3
Psat3g055720 Pisum sativum HOM05D004940 ORTHO05D007805 0.0e+00 1126.7 604 84.3
Atru.chr5.1786 Acer truncatum HOM05D004940 ORTHO05D007805 0.0e+00 1125.9 632 82.1
TPR.G9192 Trifolium pratense HOM05D004940 ORTHO05D007805 0.0e+00 1125.5 604 84.9
Migut.N02221 Erythranthe guttata HOM05D004940 ORTHO05D007805 0.0e+00 1123.6 611 83.6
Dinv16378 Davidia involucrata HOM05D004940 ORTHO05D007805 0.0e+00 1122.5 636 81.4
VMungo1383G2176 Vigna mungo HOM05D004940 ORTHO05D007805 0.0e+00 1121.3 626 81.6
Lsat_1_v5_gn_8_92240 Lactuca sativa HOM05D004940 ORTHO05D007805 0.0e+00 1119.0 628 81.4
Duzib133G0552 Durio zibethinus HOM05D004940 ORTHO05D007805 0.0e+00 1114.8 603 85.6
Migut.D00459 Erythranthe guttata HOM05D004940 ORTHO05D007805 0.0e+00 1114.8 611 82.8
Nn1g02898 Nelumbo nucifera HOM05D004940 ORTHO05D007805 0.0e+00 1114.8 627 82.1
Lalb_Chr01g0019571 Lupinus albus HOM05D004940 ORTHO05D007805 0.0e+00 1114.4 604 83.3
QL09p040550 Quercus lobata HOM05D004940 ORTHO05D007805 0.0e+00 1109.7 767 69.9
SalBow4G0784 Salvia bowleyana HOM05D004940 ORTHO05D007805 0.0e+00 1109.0 611 82.2
THA.LOC104826048 Tarenaya hassleriana HOM05D004940 ORTHO05D007805 0.0e+00 1109.0 651 77.3
ECA236G4817 Erigeron canadensis HOM05D004940 ORTHO05D007805 0.0e+00 1108.2 638 78.7
CsaV3_3G028180 Cucumis sativus L. HOM05D004940 ORTHO05D007805 0.0e+00 1105.1 612 82.7
EL10Ac7g17647 Beta vulgaris HOM05D004940 ORTHO05D007805 0.0e+00 1103.6 636 79.7
HanXRQChr04g0111301 Helianthus annuus HOM05D004940 ORTHO05D007805 0.0e+00 1102.4 636 79.2
Ca_08723_v3 Cicer arietinum L. HOM05D004940 ORTHO05D007805 0.0e+00 1096.3 603 83.6
PSO764G0099 Papaver somniferum HOM05D004940 ORTHO05D007805 0.0e+00 1093.2 611 82.5
Glyma.03G165500 Glycine max HOM05D004940 ORTHO05D007805 0.0e+00 1092.0 599 83.5
Sed0008536 Sechium edule HOM05D004940 ORTHO05D007805 0.0e+00 1091.6 612 81.4
BcaC07g42217 Brassica carinata HOM05D004940 ORTHO05D007805 0.0e+00 1080.5 612 79.2
Sp1g02850 Schrenkiella parvula HOM05D004940 ORTHO05D007805 0.0e+00 1078.9 629 77.4
A09p68080 Brassica napus HOM05D004940 ORTHO05D007805 0.0e+00 1078.5 642 76.6
C08p52520 Brassica napus HOM05D004940 ORTHO05D007805 0.0e+00 1078.5 628 77.5
BolC5t29011H Brassica oleracea HOM05D004940 ORTHO05D007805 0.0e+00 1078.5 613 79.3
BolC8t52779H Brassica oleracea HOM05D004940 ORTHO05D007805 0.0e+00 1078.5 628 77.5
BraA09t42143Z Brassica rapa HOM05D004940 ORTHO05D007805 0.0e+00 1077.0 642 76.5
BraA10t42520Z Brassica rapa HOM05D004940 ORTHO05D007805 0.0e+00 1077.0 613 79.1
FAN20G1599 Fragaria x ananassa HOM05D004940 ORTHO05D007805 4.4e-312 1074.7 741 70.3
Rhsim13G0038600 Rhododendron simsii HOM05D004940 ORTHO05D007805 4.4e-312 1074.7 848 62.1
Thhalv10007051m.g Eutrema salsugineum HOM05D004940 ORTHO05D007805 1.9e-310 1068.5 612 79.2
C05p02330 Brassica napus HOM05D004940 ORTHO05D007805 2.5e-310 1068.1 640 75.9
AT1G04010 Arabidopsis thaliana HOM05D004940 ORTHO05D007805 3.3e-310 1067.8 629 77.3
Carub.0001s0317 Capsella rubella HOM05D004940 ORTHO05D007805 4.3e-310 1067.4 629 77.4
MBI07_g18994_MAGBIO Magnolia biondii HOM05D004940 ORTHO05D007805 1.2e-309 1065.8 636 77.8
Haze_24676 Corylus avellana HOM05D004940 ORTHO05D007805 3.6e-309 1064.3 686 73.2
CARHR003360 Cardamine hirsuta HOM05D004940 ORTHO05D007805 6.2e-309 1063.5 628 77.4
A10p02520 Brassica napus HOM05D004940 ORTHO05D007805 1.8e-308 1062.0 656 74.2
BcaC05g24475 Brassica carinata HOM05D004940 ORTHO05D007805 4.4e-307 1057.4 595 79.5
Aa31LG1G20810 Aethionema arabicum HOM05D004940 ORTHO05D007805 1.3e-306 1055.8 611 78.1
CSS0021031 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D007805 1.0e-303 1046.2 636 76.9
Zm00001eb258680 Zea mays HOM05D004940 ORTHO05D007805 2.3e-303 1045.0 635 75.9
DCAR_000927 Daucus carota HOM05D004940 ORTHO05D007805 1.8e-300 1035.4 637 74.7
TWI75G1829 Tripterygium wilfordii HOM05D004940 ORTHO05D007805 5.3e-300 1033.9 556 85.4
FAN15G2608 Fragaria x ananassa HOM05D004940 ORTHO05D007805 1.5e-299 1032.3 669 73.4
Manes.13G037500 Manihot esculenta HOM05D004940 ORTHO05D007805 4.6e-296 1020.8 583 81.8
FAN24G3024 Fragaria x ananassa HOM05D004940 ORTHO05D007805 6.0e-296 1020.4 669 72.9
Solyc09g072710.4 Solanum lycopersicum HOM05D004940 ORTHO05D007805 6.7e-295 1016.9 636 74.8
ClCG07G001250 Citrullus lanatus HOM05D004940 ORTHO05D007805 1.9e-294 1015.4 633 76.1
COL.COLO4_36581 Corchorus olitorius HOM05D004940 ORTHO05D007805 2.2e-290 1001.9 535 87.3
Prupe.8G218700 Prunus persica HOM05D004940 ORTHO05D007805 4.6e-288 994.2 550 84.0
ATR0736G200 Amborella trichopoda HOM05D004940 ORTHO05D007805 9.0e-284 979.9 591 76.5
SGA_v2.0_scaffold1G00640 Striga asiatica HOM05D004940 ORTHO05D007805 7.6e-283 976.9 561 80.6
Gohir.A08G045700 Gossypium hirsutum HOM05D004940 ORTHO05D007805 6.5e-282 973.8 539 85.0
Lj1C71G15 Lonicera japonica HOM05D004940 ORTHO05D007805 8.2e-277 956.8 558 79.2
Peaxi162Scf00415g00416 Petunia axillaris HOM05D004940 ORTHO05D007805 2.9e-274 948.3 573 77.7
AL1G13620 Arabidopsis lyrata HOM05D004940 ORTHO05D007805 1.0e-271 939.9 549 77.8
Hund05470 Selenicereus undatus HOM05D004940 ORTHO05D007805 1.1e-270 936.4 610 73.0
Nitab4.5_0002389g0100 Nicotiana tabacum HOM05D004940 ORTHO05D007805 5.0e-266 921.0 614 72.3
AUR62008763 Chenopodium quinoa HOM05D004940 ORTHO05D007805 6.5e-266 920.6 635 69.0
AUR62025474 Chenopodium quinoa HOM05D004940 ORTHO05D007805 1.4e-265 919.5 645 68.7
Oeu028892.3 Olea europaea HOM05D004940 ORTHO05D007805 3.9e-263 911.4 571 74.4
Nitab4.5_0003295g0190 Nicotiana tabacum HOM05D004940 ORTHO05D007805 8.5e-250 867.1 614 68.2
AagrBONN_evm.TU.Sc2ySwM_344.1925 Anthoceros agrestis HOM05D004940 ORTHO05D007805 1.5e-246 856.3 607 64.1
Mapoly0023s0070 Marchantia polymorpha HOM05D004940 ORTHO05D007805 1.0e-242 843.6 626 62.1
SMO137G0189 Selaginella moellendorffii HOM05D004940 ORTHO05D007805 4.3e-233 811.6 639 60.1
DCAR_018506 Daucus carota HOM05D004940 ORTHO05D007805 1.1e-228 797.0 491 74.3
SMO137G0113 Selaginella moellendorffii HOM05D004940 ORTHO05D007805 6.2e-224 781.2 602 60.5
Pp3c16_20320 Physcomitrium patens HOM05D004940 ORTHO05D007805 2.3e-215 752.7 557 63.4
MELO3C012862.2 Cucumis melo HOM05D004940 ORTHO05D007805 3.4e-214 748.8 428 81.3
HPP92_012807 Vanilla planifolia HOM05D004940 ORTHO05D007805 6.8e-199 698.0 410 77.3
Duzib138G0347 Durio zibethinus HOM05D004940 ORTHO05D007805 1.4e-196 690.3 381 84.0
SHI09716 Sapria himalayana HOM05D004940 ORTHO05D000023 1.7e-189 666.8 448 71.4
CDE01G0548 Ceratophyllum demersum HOM05D004940 ORTHO05D007805 6.0e-187 658.3 462 68.2
Atru.chr5.1796 Acer truncatum HOM05D004940 ORTHO05D007805 1.3e-184 650.6 352 86.1
PSO832G3423 Papaver somniferum HOM05D004940 ORTHO05D007805 5.9e-134 482.3 246 87.4
Lj1A78G31 Lonicera japonica HOM05D004940 ORTHO05D007805 4.5e-126 456.1 463 52.9
PSO832G4005 Papaver somniferum HOM05D004940 ORTHO05D007805 5.9e-118 429.1 239 83.3
Atru.chr5.1783 Acer truncatum HOM05D004940 ORTHO05D007805 3.1e-90 337.0 202 78.2
SEGI_08888 Sequoiadendron giganteum HOM05D004940 ORTHO05D007805 5.2e-82 309.7 188 72.9
PGSC0003DMG401024284 Solanum tuberosum HOM05D004940 ORTHO05D007805 2.2e-80 304.3 174 81.0
SalBow5G2300 Salvia bowleyana HOM05D004940 ORTHO05D007805 9.9e-73 278.9 205 66.8
HPP92_012808 Vanilla planifolia HOM05D004940 ORTHO05D007805 1.2e-62 245.4 122 89.3
Lj1C79T2 Lonicera japonica HOM05D004940 ORTHO05D007805 2.3e-61 241.1 130 83.1
Os02g0814100 Oryza sativa ssp. japonica HOM05D004940 ORTHO05D007805 1.7e-48 198.4 141 64.5
SEGI_20278 Sequoiadendron giganteum HOM05D004940 ORTHO05D007805 1.7e-48 198.4 160 55.6
SMO181G0022 Selaginella moellendorffii HOM05D004940 ORTHO05D037547 6.5e-48 196.4 340 36.8
SHI09711 Sapria himalayana HOM05D004940 ORTHO05D018819 3.9e-45 187.2 121 70.2
Lsat_1_v5_gn_2_111960 Lactuca sativa HOM05D004940 ORTHO05D007805 5.1e-45 186.8 105 80.0
Zm00001eb037190 Zea mays HOM05D004940 ORTHO05D007805 1.2e-41 175.6 83 91.6
SEGI_40684 Sequoiadendron giganteum HOM05D004940 ORTHO05D007805 3.7e-35 154.1 103 73.8
CSS0009798 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D022117 1.4e-31 142.1 87 72.4
CSS0004187 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D022117 1.4e-29 135.6 87 70.1
CSS0032793 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D022117 1.4e-29 135.6 87 70.1
CSS0034361 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 5.2e-29 133.7 149 50.3
MCO05G688 Micromonas commoda HOM05D001762 ORTHO05D001774 5.7e-28 130.2 211 35.5
Lj1C79G2 Lonicera japonica HOM05D004940 ORTHO05D003385 9.7e-28 129.4 66 87.9
SEGI_20843 Sequoiadendron giganteum HOM05D004940 ORTHO05D007805 4.2e-23 114.0 82 69.5
Cre02.g106400 Chlamydomonas reinhardtii HOM05D001762 ORTHO05D001774 6.1e-22 110.2 225 29.8
Lj1C79T15 Lonicera japonica HOM05D004940 ORTHO05D048414 8.0e-22 109.8 80 67.5
VMungo0251G2796 Vigna mungo HOM05D004940 ORTHO05D007805 3.0e-21 107.8 51 86.3
CSS0033490 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 1.5e-20 105.5 79 63.3
Cfa024946 Carpinus fangiana HOM05D001762 ORTHO05D001774 4.4e-20 104.0 205 29.3
CSS0008401 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 9.7e-20 102.8 56 80.4
CSS0049470 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 9.7e-20 102.8 56 80.4
CSS0026527 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 2.8e-19 101.3 79 60.8
PRCOL_00006657 Prasinoderma coloniale HOM05D001762 ORTHO05D001774 9.1e-18 96.3 224 25.0
SMO181G0033 Selaginella moellendorffii HOM05D004940 ORTHO05D037547 5.9e-17 93.6 138 40.6
CSS0050068 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D022117 1.0e-16 92.8 79 57.0
CSS0024627 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 1.7e-16 92.0 74 60.8
CSS0048666 Camellia sinensis var. sinensis HOM05D004940 ORTHO05D018819 1.7e-16 92.0 74 60.8
Phvul.008G143913 Phaseolus vulgaris HOM05D004940 ORTHO05D022117 1.5e-15 89.0 79 55.7
SEGI_00315 Sequoiadendron giganteum HOM05D004940 ORTHO05D048414 4.7e-14 84.0 51 74.5
Zm00001eb148010 Zea mays HOM05D001762 ORTHO05D001774 4.0e-13 80.9 160 30.0
Zm00001eb342120 Zea mays HOM05D001762 ORTHO05D001774 1.2e-09 69.3 157 29.3
MBI13_g29642_MAGBIO Magnolia biondii HOM05D004940 ORTHO05D001085 7.7e-09 66.6 32 75.0
Eucgr.F02231 Eucalyptus grandis HOM05D006117 ORTHO05D007996 2.5e-07 61.6 262 25.2


User provided reference genes

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