Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.014G194800 Populus trichocarpa HOM05D006061 ORTHO05D007450 0.0e+00 1232.6 608 100.0
Sabra14G0142900 Salix brachista HOM05D006061 ORTHO05D007450 2.3e-292 1008.4 574 87.6
Duzib138G1183 Durio zibethinus HOM05D006061 ORTHO05D007450 1.7e-218 763.1 608 64.3
Thecc.01G244800 Theobroma cacao HOM05D006061 ORTHO05D007450 1.1e-217 760.4 609 63.7
Atru.chr5.1926 Acer truncatum HOM05D006061 ORTHO05D007450 2.2e-215 752.7 609 63.2
Prupe.8G209500 Prunus persica HOM05D006061 ORTHO05D007450 3.0e-212 742.3 610 62.6
Cfa002517 Carpinus fangiana HOM05D006061 ORTHO05D007450 6.5e-207 724.5 611 61.4
TAR365G1230 Trochodendron aralioides HOM05D006061 ORTHO05D007450 1.2e-203 713.8 630 58.6
Gorai.007G151600 Gossypium raimondii HOM05D006061 ORTHO05D007450 7.5e-203 711.1 608 60.7
Ciclev10019392m.g Citrus clementina HOM05D006061 ORTHO05D007450 1.3e-202 710.3 609 60.9
Gohir.A11G135100 Gossypium hirsutum HOM05D006061 ORTHO05D007450 2.0e-200 703.0 611 60.4
Gohir.D11G141300 Gossypium hirsutum HOM05D006061 ORTHO05D007450 7.2e-198 694.5 611 60.1
RcHm_v2.0_Chr6g0285561 Rosa chinensis HOM05D006061 ORTHO05D007450 7.2e-198 694.5 611 59.2
MD10G1171000 Malus domestica HOM05D006061 ORTHO05D007450 9.5e-198 694.1 610 58.7
TWI59G0704 Tripterygium wilfordii HOM05D006061 ORTHO05D007450 7.0e-193 677.9 610 59.2
FvH4_2g19870 Fragaria vesca HOM05D006061 ORTHO05D007450 7.5e-187 657.9 613 56.3
Manes.12G040800 Manihot esculenta HOM05D006061 ORTHO05D007450 2.2e-186 656.4 479 69.3
THA.LOC104814544 Tarenaya hassleriana HOM05D006061 ORTHO05D007450 7.8e-184 647.9 613 56.8
Actinidia30104 Actinidia chinensis HOM05D006061 ORTHO05D007450 3.0e-183 646.0 619 54.6
Lj1g0026990 Lotus japonicus HOM05D006061 ORTHO05D007450 3.9e-183 645.6 615 55.9
ClCG09G009420 Citrullus lanatus HOM05D006061 ORTHO05D007450 5.6e-182 641.7 610 56.6
COL.COLO4_08163 Corchorus olitorius HOM05D006061 ORTHO05D007450 5.2e-180 635.2 657 53.1
CsaV3_7G025440 Cucumis sativus L. HOM05D006061 ORTHO05D007450 5.8e-179 631.7 612 55.9
GSVIVG01028489001 Vitis vinifera HOM05D006061 ORTHO05D007450 9.8e-179 630.9 571 57.4
Eucgr.H00824 Eucalyptus grandis HOM05D006061 ORTHO05D007450 6.4e-178 628.2 609 53.5
PGR083G1193 Punica granatum HOM05D006061 ORTHO05D007450 3.2e-177 625.9 608 53.9
Haze_24749 Corylus avellana HOM05D006061 ORTHO05D007450 2.0e-176 623.2 689 52.0
Glyma.19G171100 Glycine max HOM05D006061 ORTHO05D007450 2.0e-176 623.2 611 54.8
CiPaw.04G108700 Carya illinoinensis HOM05D006061 ORTHO05D007450 2.7e-176 622.9 523 61.8
Glyma.03G169900 Glycine max HOM05D006061 ORTHO05D007450 3.5e-176 622.5 610 54.4
Ca_08767_v3 Cicer arietinum L. HOM05D006061 ORTHO05D007450 3.0e-175 619.4 610 54.1
Phvul.001G168300 Phaseolus vulgaris HOM05D006061 ORTHO05D007450 5.6e-174 615.1 607 54.0
C07p00980 Brassica napus HOM05D006061 ORTHO05D007450 1.8e-172 610.1 614 53.1
CANSAT01G1389 Cannabis sativa HOM05D006061 ORTHO05D007450 3.1e-172 609.4 613 54.3
BcaC06g36697 Brassica carinata HOM05D006061 ORTHO05D007450 8.9e-172 607.8 614 52.9
BolC7t40535H Brassica oleracea HOM05D006061 ORTHO05D007450 8.9e-172 607.8 614 52.9
Nn1g03086 Nelumbo nucifera HOM05D006061 ORTHO05D007450 2.9e-170 602.8 626 52.7
PSO170G3920 Papaver somniferum HOM05D006061 ORTHO05D007450 6.4e-170 601.7 623 51.7
BcaB03g16813 Brassica carinata HOM05D006061 ORTHO05D007450 1.4e-169 600.5 612 53.1
MBI07_g08916_MAGBIO Magnolia biondii HOM05D006061 ORTHO05D007450 1.4e-169 600.5 632 53.2
Sc05g0002480 Simmondsia chinensis HOM05D006061 ORTHO05D007450 1.6e-168 597.0 624 50.5
Psat3g050240 Pisum sativum HOM05D006061 ORTHO05D007450 3.5e-168 595.9 613 52.2
A07p00530 Brassica napus HOM05D006061 ORTHO05D007450 6.0e-168 595.1 616 52.1
TPR.G7560 Trifolium pratense HOM05D006061 ORTHO05D007450 6.0e-168 595.1 619 53.0
arahy.Tifrunner.gnm1.ann1.4WTK5H Arachis hypogaea HOM05D006061 ORTHO05D007450 1.7e-167 593.6 606 53.0
arahy.Tifrunner.gnm1.ann1.J8EIPB Arachis hypogaea HOM05D006061 ORTHO05D007450 5.1e-167 592.0 606 52.8
BraA07t27847Z Brassica rapa HOM05D006061 ORTHO05D007450 8.6e-167 591.3 617 52.0
AL3G47870 Arabidopsis lyrata HOM05D006061 ORTHO05D007450 4.7e-165 585.5 614 52.8
AT2G20210 Arabidopsis thaliana HOM05D006061 ORTHO05D007450 4.7e-165 585.5 613 53.2
Thhalv10001935m.g Eutrema salsugineum HOM05D006061 ORTHO05D007450 5.2e-164 582.0 612 52.8
AUR62008856 Chenopodium quinoa HOM05D006061 ORTHO05D007450 4.4e-163 578.9 624 50.0
Aqoxy5G00054 Aquilegia oxysepala HOM05D006061 ORTHO05D007450 1.2e-160 570.9 625 49.9
Hund05498 Selenicereus undatus HOM05D006061 ORTHO05D007450 2.5e-158 563.1 625 49.4
PGSC0003DMG401020085 Solanum tuberosum HOM05D006061 ORTHO05D007450 8.1e-157 558.1 628 48.9
EL10Ac7g17761 Beta vulgaris HOM05D006061 ORTHO05D007450 1.8e-156 557.0 638 48.1
Aa31LG8G17130 Aethionema arabicum HOM05D006061 ORTHO05D007450 2.6e-155 553.1 611 49.8
FAN27G0211 Fragaria x ananassa HOM05D006061 ORTHO05D007450 3.4e-155 552.7 622 50.5
Rhsim13G0041800 Rhododendron simsii HOM05D006061 ORTHO05D000758 1.7e-154 550.4 717 45.0
Peaxi162Scf00517g00313 Petunia axillaris HOM05D006061 ORTHO05D007450 1.2e-152 544.3 646 47.5
Sopen06g035030 Solanum pennellii HOM05D006061 ORTHO05D007450 1.2e-152 544.3 627 48.2
Solyc06g083640.4 Solanum lycopersicum HOM05D006061 ORTHO05D007450 1.6e-152 543.9 627 48.2
Medtr7g099450 Medicago truncatula HOM05D006061 ORTHO05D007450 3.9e-151 539.3 620 49.4
MSTRG.12506 Avicennia marina HOM05D006061 ORTHO05D007450 9.6e-150 534.6 624 48.1
Nitab4.5_0002085g0150 Nicotiana tabacum HOM05D006061 ORTHO05D007450 4.8e-149 532.3 631 48.7
Nitab4.5_0006211g0030 Nicotiana tabacum HOM05D006061 ORTHO05D007450 4.8e-149 532.3 630 48.6
CAN.G771.51 Capsicum annuum HOM05D006061 ORTHO05D007450 1.5e-147 527.3 642 46.9
SGA_v2.0_scaffold3G01591 Striga asiatica HOM05D006061 ORTHO05D007450 1.5e-147 527.3 645 47.6
Ah.15g093400 Amaranthus hybridus HOM05D006061 ORTHO05D007450 4.5e-147 525.8 620 47.1
Lj1A80G16 Lonicera japonica HOM05D006061 ORTHO05D007450 4.5e-147 525.8 658 45.6
Migut.N02246 Erythranthe guttata HOM05D006061 ORTHO05D007450 4.2e-145 519.2 625 48.0
SalBow6G4925 Salvia bowleyana HOM05D006061 ORTHO05D007450 2.7e-144 516.5 622 47.7
HanXRQChr13g0409031 Helianthus annuus HOM05D006061 ORTHO05D007450 6.7e-143 511.9 608 45.7
Lsat_1_v5_gn_8_90281 Lactuca sativa HOM05D006061 ORTHO05D007450 1.9e-142 510.4 621 46.4
Sp3g33450 Schrenkiella parvula HOM05D006061 ORTHO05D007450 2.8e-133 479.9 484 54.8
Carub.0003s3454 Capsella rubella HOM05D006061 ORTHO05D007450 5.5e-129 465.7 487 53.8
ECA236G2978 Erigeron canadensis HOM05D006061 ORTHO05D000758 2.5e-126 456.8 614 43.5
FAN15G2648 Fragaria x ananassa HOM05D006061 ORTHO05D007450 5.5e-121 439.1 394 59.4
vmacro02729 Vaccinium macrocarpon HOM05D006061 ORTHO05D007450 1.8e-119 434.1 394 56.9
ATR0787G120 Amborella trichopoda HOM05D006061 ORTHO05D007450 2.2e-117 427.2 652 41.6
Cc01_g08490 Coffea canephora HOM05D006061 ORTHO05D007450 2.0e-115 420.6 475 46.9
Lalb_Chr01g0019421 Lupinus albus HOM05D006061 ORTHO05D007450 3.1e-108 396.7 370 55.7
AUR62025388 Chenopodium quinoa HOM05D006061 ORTHO05D007450 1.5e-102 377.9 408 50.5
CSS0041718 Camellia sinensis var. sinensis HOM05D006061 ORTHO05D007450 1.0e-95 355.1 369 51.5
VMungo1383G3365 Vigna mungo HOM05D006061 ORTHO05D007450 1.3e-93 348.2 318 57.5
Cpa.g.sc8.207 Carica papaya HOM05D006061 ORTHO05D007450 1.1e-92 345.1 277 59.9
Cpa.g.sc8.208 Carica papaya HOM05D006061 ORTHO05D007450 1.8e-92 344.4 297 58.6
Sed0025129 Sechium edule HOM05D006061 ORTHO05D007450 5.5e-89 332.8 316 56.3
MELO3C024149.2 Cucumis melo HOM05D006061 ORTHO05D007450 1.5e-81 308.1 277 57.8
CARHR110700 Cardamine hirsuta HOM05D006061 ORTHO05D007450 1.1e-68 265.4 276 52.9
Lalb_Chr01g0019411 Lupinus albus HOM05D006061 ORTHO05D007450 8.9e-63 245.7 224 58.5
VMungo1383G3184 Vigna mungo HOM05D006061 ORTHO05D007450 3.0e-58 230.7 238 51.3
Oeu039640.1 Olea europaea HOM05D006061 ORTHO05D007450 5.6e-57 226.5 224 51.8
SEGI_05721 Sequoiadendron giganteum HOM05D006061 ORTHO05D007450 8.9e-55 219.2 337 40.1
Pp3c7_21970 Physcomitrium patens HOM05D006061 ORTHO05D007450 3.7e-53 213.8 675 28.4
DCAR_004700 Daucus carota HOM05D000065 ORTHO05D007450 1.3e-50 205.3 405 35.3
SMO356G0042 Selaginella moellendorffii HOM05D006061 ORTHO05D007450 3.3e-49 200.7 619 29.1
Zm00001eb133830 Zea mays HOM05D006061 ORTHO05D007450 1.8e-47 194.9 264 41.3
unitig_8.g4624 Utricularia gibba HOM05D006061 ORTHO05D007450 3.2e-44 184.1 277 43.0
vmacro02728 Vaccinium macrocarpon HOM05D006061 ORTHO05D007450 1.1e-36 159.1 290 34.8
Phvul.004G074200 Phaseolus vulgaris HOM05D006061 ORTHO05D007450 9.0e-31 139.4 170 49.4
Zm00001eb008990 Zea mays HOM05D006061 ORTHO05D007450 2.0e-30 138.3 149 49.7
Os12g0228900 Oryza sativa ssp. japonica HOM05D006061 ORTHO05D007450 4.5e-30 137.1 243 37.9
Gorai.008G101100 Gossypium raimondii HOM05D006061 ORTHO05D007450 1.7e-29 135.2 120 55.0
SHI26842 Sapria himalayana HOM05D006061 ORTHO05D007450 3.8e-29 134.0 150 48.0
Gohir.D10G064900 Gossypium hirsutum HOM05D006061 ORTHO05D007450 8.4e-29 132.9 122 54.1
Oeu039641.2 Olea europaea HOM05D006061 ORTHO05D007450 1.1e-28 132.5 161 43.5
HPP92_014830 Vanilla planifolia HOM05D006061 ORTHO05D007450 4.2e-28 130.6 360 30.3
Zm00001eb428270 Zea mays HOM05D006061 ORTHO05D007450 5.4e-28 130.2 171 42.1
Cc00_g31740 Coffea canephora HOM05D006061 ORTHO05D007450 6.7e-26 123.2 150 45.3
Zm00001eb120120 Zea mays HOM05D006061 ORTHO05D007450 1.3e-24 119.0 123 50.4
CARHR174390 Cardamine hirsuta HOM05D006061 ORTHO05D007450 1.6e-24 118.6 101 55.4
CBR_g31999 Chara braunii HOM05D006061 ORTHO05D007450 2.6e-22 111.3 593 25.1
PSO675G3076 Papaver somniferum HOM05D006061 ORTHO05D007450 2.6e-22 111.3 340 30.3
Psat0ss8385g0040 Pisum sativum HOM05D006061 ORTHO05D007450 5.5e-20 103.6 114 40.4
Psat1g093320 Pisum sativum HOM05D006061 ORTHO05D007450 5.5e-20 103.6 115 41.7
PSO541G3330 Papaver somniferum HOM05D006061 ORTHO05D007450 3.5e-19 100.9 341 27.6
SHI26843 Sapria himalayana HOM05D006061 ORTHO05D007450 3.5e-19 100.9 196 36.7
Zm00001eb399320 Zea mays HOM05D000103 ORTHO05D007450 1.5e-17 95.5 111 46.8
Rhsim13G0055400 Rhododendron simsii HOM05D006061 ORTHO05D007450 3.3e-17 94.4 122 41.0
Zm00001eb068850 Zea mays HOM05D006061 ORTHO05D007450 1.5e-14 85.5 93 49.5
SHI26848 Sapria himalayana HOM05D006061 ORTHO05D007450 2.1e-11 75.1 104 46.2
RcHm_v2.0_Chr3g0485191 Rosa chinensis HOM05D006061 ORTHO05D007450 1.4e-07 62.4 55 54.5
RcHm_v2.0_Chr6g0254781 Rosa chinensis HOM05D006061 ORTHO05D007450 6.9e-07 60.1 53 54.7
CDE09G0654 Ceratophyllum demersum HOM05D006061 ORTHO05D007450 4.5e-06 57.4 79 41.8


User provided reference genes

Program Settings