Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.014G193300 Populus trichocarpa HOM05D000834 ORTHO05D006956 1.8e-226 788.9 395 100.0
Potri.002G255900 Populus trichocarpa HOM05D000834 ORTHO05D006956 1.1e-207 726.5 400 90.5
Sabra02G0194500 Salix brachista HOM05D000834 ORTHO05D006956 4.9e-203 711.1 400 88.5
Manes.13G039100 Manihot esculenta HOM05D000834 ORTHO05D006956 1.8e-197 692.6 400 86.5
GSVIVG01028438001 Vitis vinifera HOM05D000834 ORTHO05D006956 1.8e-197 692.6 400 85.5
PGR044G1351 Punica granatum HOM05D000834 ORTHO05D006956 6.8e-197 690.6 396 85.1
arahy.Tifrunner.gnm1.ann1.WYWU3M Arachis hypogaea HOM05D000834 ORTHO05D006956 8.9e-197 690.3 398 84.9
arahy.Tifrunner.gnm1.ann1.G250MW Arachis hypogaea HOM05D000834 ORTHO05D006956 2.0e-196 689.1 398 84.9
Gorai.007G150200 Gossypium raimondii HOM05D000834 ORTHO05D006956 2.6e-196 688.7 401 83.8
Gohir.D11G140000 Gossypium hirsutum HOM05D000834 ORTHO05D006956 2.2e-195 685.6 401 83.8
CiPaw.03G271600 Carya illinoinensis HOM05D000834 ORTHO05D006956 2.9e-195 685.3 401 83.5
Manes.12G038400 Manihot esculenta HOM05D000834 ORTHO05D006956 3.7e-195 684.9 400 85.0
Cfa002491 Carpinus fangiana HOM05D000834 ORTHO05D006956 1.1e-194 683.3 401 82.5
Duzib138G0050 Durio zibethinus HOM05D000834 ORTHO05D006956 3.2e-194 681.8 401 83.8
Haze_24714 Corylus avellana HOM05D000834 ORTHO05D006956 5.4e-194 681.0 401 82.0
Glyma.13G127400 Glycine max HOM05D000834 ORTHO05D006956 5.4e-194 681.0 397 83.4
Gohir.A11G133900 Gossypium hirsutum HOM05D000834 ORTHO05D006956 2.7e-193 678.7 401 82.5
Prupe.8G214700 Prunus persica HOM05D000834 ORTHO05D006956 3.5e-193 678.3 400 83.0
TPR.G5902 Trifolium pratense HOM05D000834 ORTHO05D006956 1.0e-192 676.8 397 82.9
Actinidia09509 Actinidia chinensis HOM05D000834 ORTHO05D006956 2.3e-192 675.6 396 82.8
Nn1g03003 Nelumbo nucifera HOM05D000834 ORTHO05D006956 3.0e-192 675.2 392 85.2
TWI12G0869 Tripterygium wilfordii HOM05D000834 ORTHO05D006956 3.0e-192 675.2 400 81.2
ClCG06G001380 Citrullus lanatus HOM05D000834 ORTHO05D006956 6.6e-192 674.1 401 82.5
Phvul.007G153700 Phaseolus vulgaris HOM05D000834 ORTHO05D006956 8.6e-192 673.7 394 83.0
CsaV3_6G007320 Cucumis sativus L. HOM05D000834 ORTHO05D006956 1.9e-191 672.5 402 81.8
Lj5g0006902 Lotus japonicus HOM05D000834 ORTHO05D006956 1.9e-191 672.5 397 82.4
VMungo0720G2048 Vigna mungo HOM05D000834 ORTHO05D006956 1.9e-191 672.5 397 82.4
Lj1C74T17 Lonicera japonica HOM05D000834 ORTHO05D006956 2.5e-191 672.2 400 84.0
TAR362G0351 Trochodendron aralioides HOM05D000834 ORTHO05D006956 3.3e-191 671.8 400 83.0
Eucgr.K01422 Eucalyptus grandis HOM05D000834 ORTHO05D006956 1.2e-190 669.8 395 81.8
Atru.chr5.1869 Acer truncatum HOM05D000834 ORTHO05D006956 3.6e-190 668.3 397 81.9
MD05G1187700 Malus domestica HOM05D000834 ORTHO05D006956 3.6e-190 668.3 400 80.5
Medtr1g069455 Medicago truncatula HOM05D000834 ORTHO05D006956 3.6e-190 668.3 397 81.6
Thecc.01G249300 Theobroma cacao HOM05D000834 ORTHO05D006956 3.6e-190 668.3 401 81.5
COL.COLO4_02902 Corchorus olitorius HOM05D000834 ORTHO05D006956 4.7e-190 667.9 398 82.4
MD10G1175400 Malus domestica HOM05D000834 ORTHO05D006956 8.0e-190 667.2 400 81.0
RcHm_v2.0_Chr6g0286481 Rosa chinensis HOM05D000834 ORTHO05D006956 3.1e-189 665.2 397 80.9
CSS0050145 Camellia sinensis var. sinensis HOM05D000834 ORTHO05D006956 4.0e-189 664.8 400 80.5
QL09p041638 Quercus lobata HOM05D000834 ORTHO05D006956 1.5e-188 662.9 402 80.8
Lalb_Chr02g0152761 Lupinus albus HOM05D000834 ORTHO05D006956 2.0e-188 662.5 396 81.8
Sc05g0002850 Simmondsia chinensis HOM05D000834 ORTHO05D006956 2.0e-188 662.5 392 80.9
FvH4_2g20370 Fragaria vesca HOM05D000834 ORTHO05D006956 9.8e-188 660.2 398 81.4
CSS0037788 Camellia sinensis var. sinensis HOM05D000834 ORTHO05D006956 2.2e-187 659.1 405 79.5
Hund05490 Selenicereus undatus HOM05D000834 ORTHO05D006956 6.4e-187 657.5 400 79.2
CANSAT01G0496 Cannabis sativa HOM05D000834 ORTHO05D006956 5.4e-186 654.4 397 80.6
CANSAT01G1591 Cannabis sativa HOM05D000834 ORTHO05D006956 5.4e-186 654.4 397 80.6
FAN24G3261 Fragaria x ananassa HOM05D000834 ORTHO05D006956 7.0e-186 654.1 399 80.5
Psat6g062480 Pisum sativum HOM05D000834 ORTHO05D006956 7.0e-186 654.1 395 80.5
Rhsim01G0259900 Rhododendron simsii HOM05D000834 ORTHO05D006956 1.6e-185 652.9 424 75.0
PSO832G2974 Papaver somniferum HOM05D000834 ORTHO05D006956 2.7e-185 652.1 400 79.8
MBI07_g22384_MAGBIO Magnolia biondii HOM05D000834 ORTHO05D006956 1.0e-184 650.2 393 81.2
Migut.D00483 Erythranthe guttata HOM05D000834 ORTHO05D006956 1.3e-184 649.8 396 79.8
Oeu052085.1 Olea europaea HOM05D000834 ORTHO05D006956 3.0e-184 648.7 395 81.8
Sed0018887 Sechium edule HOM05D000834 ORTHO05D006956 3.0e-184 648.7 401 79.8
Lalb_Chr06g0170741 Lupinus albus HOM05D000834 ORTHO05D006956 1.5e-183 646.4 397 79.8
PSO764G0197 Papaver somniferum HOM05D000834 ORTHO05D006956 1.5e-183 646.4 400 78.8
FAN15G3585 Fragaria x ananassa HOM05D000834 ORTHO05D006956 1.9e-183 646.0 391 80.8
Lsat_1_v5_gn_5_181100 Lactuca sativa HOM05D000834 ORTHO05D006956 2.5e-183 645.6 399 77.9
Ciclev10020464m.g Citrus clementina HOM05D000834 ORTHO05D006956 3.3e-183 645.2 401 77.6
THA.LOC104814534 Tarenaya hassleriana HOM05D000834 ORTHO05D006956 3.3e-183 645.2 403 76.7
ATR0787G052 Amborella trichopoda HOM05D000834 ORTHO05D006956 2.1e-182 642.5 393 81.2
THA.LOC104820067 Tarenaya hassleriana HOM05D000834 ORTHO05D006956 4.7e-182 641.3 403 77.9
SGA_v2.0_scaffold1G00665 Striga asiatica HOM05D000121 ORTHO05D000102 8.1e-182 640.6 406 77.8
Cc01_g17740 Coffea canephora HOM05D000834 ORTHO05D006956 1.1e-181 640.2 419 75.7
MSTRG.18357 Avicennia marina HOM05D000834 ORTHO05D006956 3.1e-181 638.6 399 78.2
Cpa.g.sc87.39 Carica papaya HOM05D000834 ORTHO05D006956 4.0e-181 638.3 432 74.1
MELO3C022394.2 Cucumis melo HOM05D000834 ORTHO05D006956 5.2e-181 637.9 410 77.3
HanXRQChr01g0014941 Helianthus annuus HOM05D000834 ORTHO05D006956 5.2e-181 637.9 400 76.0
CDE09G1390 Ceratophyllum demersum HOM05D000834 ORTHO05D006956 2.6e-180 635.6 377 82.8
Aa31LG8G17350 Aethionema arabicum HOM05D000834 ORTHO05D006956 4.4e-180 634.8 403 76.9
Sopen09g025590 Solanum pennellii HOM05D000834 ORTHO05D006956 5.8e-180 634.4 402 78.1
DCAR_004694 Daucus carota HOM05D000834 ORTHO05D006956 9.9e-180 633.6 389 78.9
Solyc09g064450.3 Solanum lycopersicum HOM05D000834 ORTHO05D006956 2.9e-179 632.1 402 77.9
Aqoxy5G00122 Aquilegia oxysepala HOM05D000834 ORTHO05D006956 4.1e-178 628.2 398 76.1
AL3G53320 Arabidopsis lyrata HOM05D000834 ORTHO05D006956 1.2e-177 626.7 403 75.2
AT2G20360 Arabidopsis thaliana HOM05D000834 ORTHO05D006956 1.2e-177 626.7 403 74.7
BraA09t41279Z Brassica rapa HOM05D000834 ORTHO05D006956 1.6e-177 626.3 401 75.6
AUR62025434 Chenopodium quinoa HOM05D000834 ORTHO05D006956 2.1e-177 625.9 396 76.5
BcaB07g31592 Brassica carinata HOM05D000834 ORTHO05D006956 7.8e-177 624.0 401 75.3
Carub.0003s3474 Capsella rubella HOM05D000834 ORTHO05D006956 1.3e-176 623.2 403 74.4
Sp3g33600 Schrenkiella parvula HOM05D000834 ORTHO05D006956 1.3e-176 623.2 402 75.1
BraA07t27827Z Brassica rapa HOM05D000834 ORTHO05D006956 5.1e-176 621.3 402 75.4
CARHR110880 Cardamine hirsuta HOM05D000834 ORTHO05D006956 1.1e-175 620.2 403 74.7
A07p00360 Brassica napus HOM05D000834 ORTHO05D000909 1.9e-175 619.4 401 75.3
BcaC07g41219 Brassica carinata HOM05D000834 ORTHO05D006956 2.5e-175 619.0 402 75.1
BcaC04g22796 Brassica carinata HOM05D000834 ORTHO05D006956 3.3e-175 618.6 401 74.6
BolC9t54430H Brassica oleracea HOM05D000834 ORTHO05D006956 3.3e-175 618.6 401 74.6
HPP92_020769 Vanilla planifolia HOM05D000834 ORTHO05D006956 3.3e-175 618.6 395 76.5
A09p58940 Brassica napus HOM05D000834 ORTHO05D006956 9.5e-175 617.1 394 75.9
BolC8t51785H Brassica oleracea HOM05D000834 ORTHO05D006956 9.5e-175 617.1 401 75.1
BcaC06g36723 Brassica carinata HOM05D000834 ORTHO05D006956 1.2e-174 616.7 401 74.6
BcaB08g34904 Brassica carinata HOM05D000834 ORTHO05D006956 1.6e-174 616.3 399 76.2
C08p42260 Brassica napus HOM05D000834 ORTHO05D006956 1.6e-174 616.3 394 75.9
A09p12840 Brassica napus HOM05D000834 ORTHO05D006956 3.6e-174 615.1 379 77.0
BolC7t40517H Brassica oleracea HOM05D000834 ORTHO05D006956 4.7e-174 614.8 400 74.5
C07p00720 Brassica napus HOM05D000834 ORTHO05D006956 1.8e-173 612.8 400 74.2
Thhalv10002002m.g Eutrema salsugineum HOM05D000834 ORTHO05D006956 2.4e-173 612.5 401 74.3
Peaxi162Scf00043g00251 Petunia axillaris HOM05D000834 ORTHO05D006956 3.1e-173 612.1 405 75.8
BraA09t36931Z Brassica rapa HOM05D000834 ORTHO05D006956 2.0e-172 609.4 391 76.0
C09p15230 Brassica napus HOM05D000834 ORTHO05D006956 3.4e-172 608.6 379 76.3
Ca_09644_v3 Cicer arietinum L. HOM05D000834 ORTHO05D006956 3.4e-172 608.6 414 72.9
unitig_22.g6307 Utricularia gibba HOM05D000834 ORTHO05D006956 4.9e-171 604.7 400 74.8
SalBow4G1359 Salvia bowleyana HOM05D000834 ORTHO05D006956 6.4e-171 604.4 496 63.9
Ah.08g213640 Amaranthus hybridus HOM05D000834 ORTHO05D006956 1.9e-170 602.8 364 79.7
CSS0005533 Camellia sinensis var. sinensis HOM05D000834 ORTHO05D006956 9.2e-170 600.5 452 69.9
Os02g0816800 Oryza sativa ssp. japonica HOM05D000834 ORTHO05D006956 2.3e-168 595.9 364 79.7
Nitab4.5_0002435g0060 Nicotiana tabacum HOM05D000834 ORTHO05D006956 3.6e-166 588.6 443 67.3
Nitab4.5_0000385g0020 Nicotiana tabacum HOM05D000834 ORTHO05D006956 1.1e-165 587.0 442 67.4
vmacro14792 Vaccinium macrocarpon HOM05D000834 ORTHO05D006956 1.4e-165 586.6 553 57.1
BcaB03g16828 Brassica carinata HOM05D000834 ORTHO05D006956 7.1e-162 574.3 401 71.1
FAN27G0744 Fragaria x ananassa HOM05D000834 ORTHO05D006956 3.0e-160 568.9 351 80.6
SEGI_11456 Sequoiadendron giganteum HOM05D000834 ORTHO05D006956 5.6e-159 564.7 375 71.2
CDE02G1088 Ceratophyllum demersum HOM05D000834 ORTHO05D006956 8.4e-147 524.2 328 79.9
Dinv19263 Davidia involucrata HOM05D000834 ORTHO05D006956 6.7e-144 514.6 292 83.9
AUR62008805 Chenopodium quinoa HOM05D000834 ORTHO05D006956 2.8e-142 509.2 309 77.3
CAN.G536.3 Capsicum annuum HOM05D000834 ORTHO05D006956 5.3e-141 505.0 316 80.1
ECA248G1156 Erigeron canadensis HOM05D000121 ORTHO05D000102 8.7e-136 487.6 312 76.9
SalBow6G5988 Salvia bowleyana HOM05D000834 ORTHO05D006956 3.1e-125 452.6 343 70.0
AagrBONN_evm.TU.Sc2ySwM_368.182 Anthoceros agrestis HOM05D000834 ORTHO05D006956 7.2e-122 441.4 391 57.3
Mapoly0051s0097 Marchantia polymorpha HOM05D000834 ORTHO05D006956 4.4e-119 432.2 360 59.2
Pp3c14_9070 Physcomitrium patens HOM05D000834 ORTHO05D006956 8.2e-118 427.9 366 54.4
Zm00001eb258880 Zea mays HOM05D000834 ORTHO05D006956 1.9e-114 416.8 261 78.5
CBR_g12802 Chara braunii HOM05D000834 ORTHO05D006956 1.2e-113 414.1 340 56.8
SMO119G0351 Selaginella moellendorffii HOM05D000834 ORTHO05D006956 1.1e-101 374.4 357 52.1
Actinidia23703 Actinidia chinensis HOM05D000834 ORTHO05D006956 1.6e-97 360.5 235 78.3
MD15G1374200 Malus domestica HOM05D000834 ORTHO05D006956 1.4e-88 330.9 226 71.7
Pp3c1_35920 Physcomitrium patens HOM05D000834 ORTHO05D006956 5.9e-84 315.5 289 49.8
MCO13G055 Micromonas commoda HOM05D000834 ORTHO05D006956 1.6e-76 290.8 334 44.3
PRCOL_00005891 Prasinoderma coloniale HOM05D000834 ORTHO05D006956 6.0e-68 262.3 366 39.3
Dinv43064 Davidia involucrata HOM05D000834 ORTHO05D006956 1.4e-61 241.1 229 58.1
Cre10.g434450 Chlamydomonas reinhardtii HOM05D000834 ORTHO05D006956 1.6e-60 237.7 351 39.6
SHI26743 Sapria himalayana HOM05D000834 ORTHO05D006956 1.2e-57 228.0 205 62.0
Oeu015439.4 Olea europaea HOM05D000121 ORTHO05D000102 4.0e-56 223.0 268 49.6
SEGI_20632 Sequoiadendron giganteum HOM05D000834 ORTHO05D006956 6.8e-56 222.2 144 75.0
Gohir.A13G077301 Gossypium hirsutum HOM05D000834 ORTHO05D006956 1.0e-43 181.8 99 87.9
Gohir.A12G044900 Gossypium hirsutum HOM05D000751 ORTHO05D000889 2.4e-32 144.1 80 83.8
Gohir.A01G059200 Gossypium hirsutum HOM05D000751 ORTHO05D000889 4.0e-32 143.3 82 82.9
CDE02G0223 Ceratophyllum demersum HOM05D000834 ORTHO05D006956 4.5e-31 139.8 81 84.0
vmacro08769 Vaccinium macrocarpon HOM05D000834 ORTHO05D006956 2.7e-28 130.6 132 55.3
vmacro08768 Vaccinium macrocarpon HOM05D000834 ORTHO05D426596 2.9e-22 110.5 71 71.8
SHI26740 Sapria himalayana HOM05D000834 ORTHO05D006956 3.8e-22 110.2 105 53.3
BcaB02g11316 Brassica carinata HOM05D000834 ORTHO05D000693 1.9e-18 97.8 77 64.9
Lsat_1_v5_gn_8_148040 Lactuca sativa HOM05D000834 ORTHO05D006956 1.0e-11 75.5 59 61.0
Dinv43063 Davidia involucrata HOM05D000834 ORTHO05D183077 4.1e-08 63.5 32 87.5
CiPaw.05G147100 Carya illinoinensis HOM05D000834 ORTHO05D006956 1.2e-07 62.0 42 78.6
Lsat_1_v5_gn_7_90061 Lactuca sativa HOM05D000834 ORTHO05D001119 2.0e-07 61.2 37 73.0
arahy.Tifrunner.gnm1.ann1.1Z9DBD Arachis hypogaea HOM05D000380 ORTHO05D002061 1.3e-06 58.5 47 59.6
C09p57810 Brassica napus HOM05D006883 ORTHO05D008624 6.5e-06 56.2 260 22.7


User provided reference genes

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