Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.014G191100 Populus trichocarpa HOM05D004954 ORTHO05D006267 0.0e+00 1199.9 617 100.0
Duzib211G0600 Durio zibethinus HOM05D004954 ORTHO05D006267 2.4e-310 1068.1 618 89.2
Thecc.01G211600 Theobroma cacao HOM05D004954 ORTHO05D006267 1.6e-309 1065.4 618 89.2
Dinv10429 Davidia involucrata HOM05D004954 ORTHO05D006267 3.7e-306 1054.3 617 87.4
Gohir.D07G166900 Gossypium hirsutum HOM05D004954 ORTHO05D006267 4.8e-306 1053.9 615 88.1
Gorai.N003600 Gossypium raimondii HOM05D004954 ORTHO05D006267 8.1e-306 1053.1 615 88.1
Prupe.8G191000 Prunus persica HOM05D004954 ORTHO05D006267 8.1e-306 1053.1 618 87.5
TWI18G0293 Tripterygium wilfordii HOM05D004954 ORTHO05D006267 9.9e-304 1046.2 618 86.9
Gohir.A07G159500 Gossypium hirsutum HOM05D004954 ORTHO05D006267 1.7e-303 1045.4 615 87.6
QL09p046153 Quercus lobata HOM05D004954 ORTHO05D006267 2.2e-303 1045.0 617 87.8
Atru.chr5.2285 Acer truncatum HOM05D004954 ORTHO05D006267 2.9e-303 1044.6 618 87.1
CSS0025127 Camellia sinensis var. sinensis HOM05D004954 ORTHO05D006267 3.8e-303 1044.3 618 86.7
CiPaw.13G054900 Carya illinoinensis HOM05D004954 ORTHO05D006267 1.4e-302 1042.3 618 87.2
MD10G1152500 Malus domestica HOM05D004954 ORTHO05D006267 5.5e-302 1040.4 617 85.9
PGR044G2625 Punica granatum HOM05D004954 ORTHO05D006267 5.5e-302 1040.4 614 85.8
CANSAT01G1324 Cannabis sativa HOM05D004954 ORTHO05D006267 9.3e-302 1039.6 618 86.7
Actinidia34548 Actinidia chinensis HOM05D004954 ORTHO05D006267 4.6e-301 1037.3 617 85.9
Ciclev10004559m.g Citrus clementina HOM05D004954 ORTHO05D006267 6.0e-301 1036.9 618 86.6
CsaV3_7G026900 Cucumis sativus L. HOM05D004954 ORTHO05D006267 3.0e-300 1034.6 614 85.8
RcHm_v2.0_Chr6g0282881 Rosa chinensis HOM05D004954 ORTHO05D006267 5.1e-300 1033.9 617 85.9
Sed0007567 Sechium edule HOM05D004954 ORTHO05D006267 2.5e-299 1031.6 617 85.3
MELO3C012723.2 Cucumis melo HOM05D004954 ORTHO05D006267 4.3e-299 1030.8 617 85.1
Dinv28815 Davidia involucrata HOM05D004954 ORTHO05D006267 2.4e-297 1025.0 618 84.8
Lj1C100T5 Lonicera japonica HOM05D004954 ORTHO05D006267 4.0e-297 1024.2 616 86.0
FAN24G2804 Fragaria x ananassa HOM05D004954 ORTHO05D006267 6.9e-297 1023.5 624 84.5
Eucgr.H00730 Eucalyptus grandis HOM05D004954 ORTHO05D006267 1.2e-296 1022.7 617 84.4
Rhsim13G0052400 Rhododendron simsii HOM05D004954 ORTHO05D006267 1.0e-295 1019.6 638 82.8
FAN27G0710 Fragaria x ananassa HOM05D004954 ORTHO05D006267 1.7e-295 1018.8 628 83.8
Cc01_g16190 Coffea canephora HOM05D004954 ORTHO05D006267 2.9e-295 1018.1 616 83.9
THA.LOC104818994 Tarenaya hassleriana HOM05D004954 ORTHO05D006267 4.2e-294 1014.2 617 84.0
ClCG09G008140 Citrullus lanatus HOM05D004954 ORTHO05D006267 7.1e-294 1013.4 617 84.6
Actinidia23789 Actinidia chinensis HOM05D004954 ORTHO05D006267 1.6e-293 1012.3 656 81.1
Lalb_Chr19g0124251 Lupinus albus HOM05D004954 ORTHO05D006267 3.3e-291 1004.6 617 83.6
ECA248G3210 Erigeron canadensis HOM05D004954 ORTHO05D006267 5.7e-291 1003.8 618 83.8
CSS0003762 Camellia sinensis var. sinensis HOM05D004954 ORTHO05D006267 9.0e-289 996.5 619 84.2
SalBow6G4493 Salvia bowleyana HOM05D004954 ORTHO05D006267 4.5e-288 994.2 617 81.8
HanXRQChr01g0007231 Helianthus annuus HOM05D004954 ORTHO05D006267 1.0e-287 993.0 618 82.2
DCAR_012691 Daucus carota HOM05D004954 ORTHO05D006267 1.7e-287 992.3 621 82.0
Haze_25215 Corylus avellana HOM05D004954 ORTHO05D006267 2.9e-287 991.5 684 77.5
Oeu003633.1 Olea europaea HOM05D004954 ORTHO05D006267 7.2e-286 986.9 617 81.8
MSTRG.21308 Avicennia marina HOM05D004954 ORTHO05D006267 1.6e-285 985.7 618 81.1
VMungo0251G2039 Vigna mungo HOM05D004954 ORTHO05D006267 7.9e-285 983.4 618 82.4
Phvul.003G003500 Phaseolus vulgaris HOM05D004954 ORTHO05D006267 1.0e-284 983.0 618 82.2
Thhalv10003836m.g Eutrema salsugineum HOM05D004954 ORTHO05D006267 2.5e-283 978.4 616 81.2
Glyma.17G145700 Glycine max HOM05D004954 ORTHO05D006267 3.3e-283 978.0 619 81.7
Nn8g39913 Nelumbo nucifera HOM05D004954 ORTHO05D006267 3.7e-282 974.5 616 81.3
C07p39210 Brassica napus HOM05D004954 ORTHO05D006267 1.8e-281 972.2 616 80.0
TPR.G29775 Trifolium pratense HOM05D004954 ORTHO05D006267 2.4e-281 971.8 623 80.4
Sp2g18880 Schrenkiella parvula HOM05D004954 ORTHO05D006267 4.1e-281 971.1 616 80.7
AT5G48520 Arabidopsis thaliana HOM05D004954 ORTHO05D006267 5.3e-281 970.7 616 80.4
BolC7t44441H Brassica oleracea HOM05D004954 ORTHO05D006267 5.3e-281 970.7 616 80.0
A06p39130 Brassica napus HOM05D004954 ORTHO05D006267 6.9e-281 970.3 616 80.0
arahy.Tifrunner.gnm1.ann1.4YG7MF Arachis hypogaea HOM05D004954 ORTHO05D006267 2.0e-280 968.8 618 81.2
arahy.Tifrunner.gnm1.ann1.E22JQ7 Arachis hypogaea HOM05D004954 ORTHO05D006267 2.0e-280 968.8 618 81.2
Lj2g0006494 Lotus japonicus HOM05D004954 ORTHO05D006267 2.0e-280 968.8 617 81.5
PSO170G3087 Papaver somniferum HOM05D004954 ORTHO05D006267 2.0e-280 968.8 613 80.6
PSO063G7187 Papaver somniferum HOM05D004954 ORTHO05D006267 1.0e-279 966.5 613 80.3
vmacro21304 Vaccinium macrocarpon HOM05D004954 ORTHO05D006267 2.9e-279 964.9 753 70.1
Carub.0008s0810 Capsella rubella HOM05D004954 ORTHO05D006267 3.8e-279 964.5 614 80.1
EL10Ac5g10627 Beta vulgaris HOM05D004954 ORTHO05D006267 7.2e-278 960.3 609 79.6
Ah.11g051040 Amaranthus hybridus HOM05D004954 ORTHO05D006267 2.1e-277 958.7 644 76.2
Hund09467 Selenicereus undatus HOM05D004954 ORTHO05D006267 3.6e-277 958.0 610 79.7
Manes.13G054100 Manihot esculenta HOM05D004954 ORTHO05D006267 3.9e-276 954.5 541 90.0
Sabra14G0144200 Salix brachista HOM05D004954 ORTHO05D006267 3.9e-276 954.5 513 95.9
BraA06t26827Z Brassica rapa HOM05D004954 ORTHO05D006267 2.6e-275 951.8 649 76.1
Medtr1g038570 Medicago truncatula HOM05D004954 ORTHO05D006267 4.4e-275 951.0 622 79.1
CAN.G874.27 Capsicum annuum HOM05D004954 ORTHO05D006267 1.7e-274 949.1 614 78.2
Sopen06g034480 Solanum pennellii HOM05D004954 ORTHO05D006267 2.6e-272 941.8 614 78.0
MBI18_g30537_MAGBIO Magnolia biondii HOM05D004954 ORTHO05D006267 3.5e-272 941.4 629 77.7
BcaC06g30786 Brassica carinata HOM05D004954 ORTHO05D006267 7.7e-272 940.3 616 78.2
unitig_37.g12142 Utricularia gibba HOM05D004954 ORTHO05D006267 1.3e-271 939.5 617 78.0
Solyc06g083090.4 Solanum lycopersicum HOM05D004954 ORTHO05D006267 1.9e-270 935.6 614 77.4
Aqoxy7G02924 Aquilegia oxysepala HOM05D004954 ORTHO05D006267 3.0e-268 928.3 614 78.0
Migut.D00727 Erythranthe guttata HOM05D004954 ORTHO05D006267 3.0e-268 928.3 614 78.0
DCAR_018627 Daucus carota HOM05D004954 ORTHO05D006267 2.2e-266 922.2 615 76.7
Nitab4.5_0011983g0020 Nicotiana tabacum HOM05D004954 ORTHO05D006267 3.8e-263 911.4 614 76.5
Peaxi162Scf01242g00120 Petunia axillaris HOM05D004954 ORTHO05D006267 4.2e-262 907.9 614 75.9
SGA_v2.0_scaffold29G12103 Striga asiatica HOM05D004954 ORTHO05D006267 5.5e-262 907.5 574 80.1
Nitab4.5_0002463g0060 Nicotiana tabacum HOM05D004954 ORTHO05D006267 6.1e-261 904.0 614 76.1
AUR62028702 Chenopodium quinoa HOM05D004954 ORTHO05D006267 1.4e-260 902.9 617 76.0
ATR0824G007 Amborella trichopoda HOM05D004954 ORTHO05D006267 6.7e-260 900.6 616 74.5
AUR62008123 Chenopodium quinoa HOM05D004954 ORTHO05D006267 8.8e-260 900.2 633 74.6
Aa31sc420G20 Aethionema arabicum HOM05D004954 ORTHO05D006267 1.8e-257 892.5 582 78.7
Sopen06g034490 Solanum pennellii HOM05D004954 ORTHO05D006267 1.8e-257 892.5 599 75.8
TAR375G0531 Trochodendron aralioides HOM05D004954 ORTHO05D006267 7.2e-254 880.6 639 73.4
Solyc06g083100.2 Solanum lycopersicum HOM05D004954 ORTHO05D006267 1.6e-253 879.4 601 74.9
HPP92_017515 Vanilla planifolia HOM05D004954 ORTHO05D006267 2.7e-253 878.6 615 73.0
Cfa002884 Carpinus fangiana HOM05D004954 ORTHO05D006267 6.3e-250 867.5 516 85.3
Psat6g025280 Pisum sativum HOM05D004954 ORTHO05D006267 1.2e-248 863.2 575 78.8
FvH4_2g17860 Fragaria vesca HOM05D004954 ORTHO05D006267 2.7e-248 862.1 516 84.3
Ca_12404_v3 Cicer arietinum L. HOM05D004954 ORTHO05D006267 2.5e-246 855.5 623 73.4
Os06g0186500 Oryza sativa ssp. japonica HOM05D004954 ORTHO05D006267 2.6e-235 818.9 616 68.7
CDE04G1241 Ceratophyllum demersum HOM05D004954 ORTHO05D006267 7.5e-235 817.4 616 70.5
Atru.chr12.963 Acer truncatum HOM05D004954 ORTHO05D006267 3.7e-226 788.5 446 89.9
Lsat_1_v5_gn_5_178381 Lactuca sativa HOM05D004954 ORTHO05D006267 2.4e-217 759.2 530 75.3
Sc17g0001680 Simmondsia chinensis HOM05D004954 ORTHO05D006267 2.7e-216 755.7 468 81.0
Pp3c20_5680 Physcomitrium patens HOM05D004954 ORTHO05D006267 8.6e-215 750.7 615 60.5
FAN15G2379 Fragaria x ananassa HOM05D004954 ORTHO05D006267 2.4e-209 732.6 557 70.9
SMO367G0402 Selaginella moellendorffii HOM05D004954 ORTHO05D006267 3.0e-207 725.7 619 59.1
Mapoly0098s0023 Marchantia polymorpha HOM05D004954 ORTHO05D006267 9.0e-196 687.6 614 57.2
AagrBONN_evm.TU.Sc2ySwM_344.252 Anthoceros agrestis HOM05D004954 ORTHO05D006267 8.7e-183 644.4 646 51.4
Cpa.g.sc8.76 Carica papaya HOM05D004954 ORTHO05D006267 5.8e-179 631.7 361 90.3
COL.COLO4_03294 Corchorus olitorius HOM05D004954 ORTHO05D006267 3.7e-165 585.9 342 90.1
CARHR183510 Cardamine hirsuta HOM05D004954 ORTHO05D006267 1.2e-163 580.9 360 83.1
GSVIVG01006234001 Vitis vinifera HOM05D004954 ORTHO05D006267 5.0e-162 575.5 489 67.1
Os07g0185700 Oryza sativa ssp. japonica HOM05D004954 ORTHO05D006267 3.9e-159 565.8 616 50.2
Zm00001eb301770 Zea mays HOM05D004954 ORTHO05D006267 2.0e-150 537.0 616 47.4
arahy.Tifrunner.gnm1.ann1.R4R8P3 Arachis hypogaea HOM05D004954 ORTHO05D006267 1.7e-149 533.9 393 74.6
Zm00001eb278340 Zea mays HOM05D004954 ORTHO05D006267 5.5e-137 492.3 364 69.8
SMO302G0009 Selaginella moellendorffii HOM05D004954 ORTHO05D006267 1.1e-124 451.4 599 46.1
CBR_g32699 Chara braunii HOM05D004954 ORTHO05D006267 1.8e-124 450.7 511 46.6
vmacro21300 Vaccinium macrocarpon HOM05D004954 ORTHO05D006267 2.2e-117 427.2 282 81.2
MD05G1162300 Malus domestica HOM05D004954 ORTHO05D006267 1.1e-116 424.9 368 65.5
MD05G1161600 Malus domestica HOM05D004954 ORTHO05D006267 8.6e-106 388.7 457 53.4
GSVIVG01002254001 Vitis vinifera HOM05D004954 ORTHO05D006267 9.9e-78 295.4 175 84.6
COL.COLO4_03295 Corchorus olitorius HOM05D004954 ORTHO05D006267 3.5e-75 287.0 174 85.1
SEGI_36119 Sequoiadendron giganteum HOM05D004954 ORTHO05D006267 5.8e-70 269.6 186 71.5
FAN15G2003 Fragaria x ananassa HOM05D004954 ORTHO05D006267 8.2e-64 249.2 149 88.6
Sc17g0001690 Simmondsia chinensis HOM05D004954 ORTHO05D006267 8.4e-61 239.2 144 86.1
FAN15G2507 Fragaria x ananassa HOM05D004954 ORTHO05D006267 1.3e-56 225.3 134 84.3
Sabra14G0144300 Salix brachista HOM05D004954 ORTHO05D006267 2.9e-53 214.2 106 99.1
Cpa.g.sc8.77 Carica papaya HOM05D004954 ORTHO05D006267 6.1e-51 206.5 117 87.2
Atru.chr12.964 Acer truncatum HOM05D004954 ORTHO05D006267 1.5e-49 201.8 150 69.3
MD05G1161700 Malus domestica HOM05D004954 ORTHO05D006267 4.1e-47 193.7 122 82.0
SEGI_30399 Sequoiadendron giganteum HOM05D004954 ORTHO05D006267 1.1e-44 185.7 135 70.4
VMungo0647G2582 Vigna mungo HOM05D004954 ORTHO05D006267 7.9e-43 179.5 102 91.2
MBI18_g37244_MAGBIO Magnolia biondii HOM05D004954 ORTHO05D006267 1.4e-42 178.7 105 81.9
Ca_12408_v3 Cicer arietinum L. HOM05D004954 ORTHO05D006267 2.1e-35 154.8 178 50.0
MD05G1160200 Malus domestica HOM05D004954 ORTHO05D006267 3.1e-31 141.0 86 83.7
Ca_12409_v3 Cicer arietinum L. HOM05D004954 ORTHO05D006267 1.3e-29 135.6 74 91.9
VMungo0647G1109 Vigna mungo HOM05D004954 ORTHO05D006267 8.5e-29 132.9 125 64.8
CBR_g49514 Chara braunii HOM05D000019 ORTHO05D001702 2.4e-23 114.8 106 50.9
MD05G1162200 Malus domestica HOM05D004954 ORTHO05D006267 3.5e-22 110.9 58 86.2
SEGI_32998 Sequoiadendron giganteum HOM05D004954 ORTHO05D006267 6.5e-21 106.7 84 67.9
Cfa002883 Carpinus fangiana HOM05D020463 ORTHO05D022255 4.2e-20 104.0 54 92.6
QL09p053445 Quercus lobata HOM05D004954 ORTHO05D030058 4.2e-20 104.0 115 59.1
VMungo0464G0043 Vigna mungo HOM05D004954 ORTHO05D006267 4.2e-20 104.0 59 78.0
VMungo0720G1677 Vigna mungo HOM05D002055 ORTHO05D002120 4.2e-20 104.0 59 78.0
PGSC0003DMG400008807 Solanum tuberosum HOM05D004954 ORTHO05D006267 2.1e-19 101.7 59 72.9
PGSC0003DMG400020114 Solanum tuberosum HOM05D004954 ORTHO05D006267 2.1e-19 101.7 59 72.9
Ciclev10018232m.g Citrus clementina HOM05D004954 ORTHO05D006267 2.3e-18 98.2 76 67.1
Hma1.2p1_0066F.1_g035760 Hydrangea macrophylla HOM05D004954 ORTHO05D006267 3.7e-16 90.9 55 74.5
Glyma.09G284100 Glycine max HOM05D004954 ORTHO05D006267 1.2e-14 85.9 50 78.0
TAR375G0464 Trochodendron aralioides HOM05D004954 ORTHO05D006267 1.1e-12 79.3 43 86.0
CSS0000571 Camellia sinensis var. sinensis HOM05D004954 ORTHO05D014145 3.6e-11 74.3 73 58.9
Medtr3g114845 Medicago truncatula HOM05D004954 ORTHO05D006267 2.6e-09 68.2 51 54.9
MD05G1162500 Malus domestica HOM05D004954 ORTHO05D006267 7.5e-09 66.6 80 46.2
SEGI_31941 Sequoiadendron giganteum HOM05D004954 ORTHO05D006267 8.3e-08 63.2 38 73.7
Hma1.2p1_0717F.1_g208260 Hydrangea macrophylla HOM05D007286 ORTHO05D008955 2.7e-06 58.2 34 79.4
Hma1.2p1_2056F.1_g312790 Hydrangea macrophylla HOM05D007286 ORTHO05D008955 5.9e-06 57.0 33 81.8


User provided reference genes

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