Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.014G188400 Populus trichocarpa HOM05D005616 ORTHO05D006975 5.4e-75 284.3 145 100.0
Potri.008G069500 Populus trichocarpa HOM05D005616 ORTHO05D006975 3.2e-43 178.7 130 73.8
Potri.012G145600 Populus trichocarpa HOM05D005616 ORTHO05D006975 1.2e-42 176.8 130 73.1
Sabra08G0051100 Salix brachista HOM05D005616 ORTHO05D006975 1.2e-42 176.8 130 72.3
RcHm_v2.0_Chr1g0370411 Rosa chinensis HOM05D005616 ORTHO05D006975 8.4e-36 154.1 130 63.1
Ciclev10032361m.g Citrus clementina HOM05D005616 ORTHO05D006975 2.4e-35 152.5 130 61.5
FAN07G0068 Fragaria x ananassa HOM05D005616 ORTHO05D006975 1.6e-34 149.8 130 62.3
Lj8A66T51 Lonicera japonica HOM05D005616 ORTHO05D006975 1.6e-34 149.8 130 61.5
Manes.10G011400 Manihot esculenta HOM05D005616 ORTHO05D006975 1.6e-34 149.8 130 63.1
Cfa001309 Carpinus fangiana HOM05D005616 ORTHO05D006975 2.7e-34 149.1 130 60.8
CiPaw.02G193000 Carya illinoinensis HOM05D005616 ORTHO05D006975 2.7e-34 149.1 130 60.8
Haze_17234 Corylus avellana HOM05D005616 ORTHO05D006975 2.7e-34 149.1 130 60.8
Lj1g0010131 Lotus japonicus HOM05D005616 ORTHO05D006975 6.0e-34 147.9 130 60.0
Ca_15132_v3 Cicer arietinum L. HOM05D005616 ORTHO05D006975 7.9e-34 147.5 130 60.0
FvH4_7g24571 Fragaria vesca HOM05D005616 ORTHO05D006975 7.9e-34 147.5 130 61.5
FAN06G2993 Fragaria x ananassa HOM05D001932 ORTHO05D006975 7.9e-34 147.5 130 61.5
FAN03G0254 Fragaria x ananassa HOM05D005616 ORTHO05D006975 1.3e-33 146.7 130 60.8
Glyma.11G230900 Glycine max HOM05D005616 ORTHO05D006975 1.3e-33 146.7 130 60.0
Lalb_Chr08g0231681 Lupinus albus HOM05D005616 ORTHO05D006975 1.3e-33 146.7 130 60.0
MD07G1223000 Malus domestica HOM05D005616 ORTHO05D006975 1.3e-33 146.7 130 60.0
Phvul.001G244100 Phaseolus vulgaris HOM05D005616 ORTHO05D006975 1.3e-33 146.7 130 60.0
Glyma.18G026400 Glycine max HOM05D005616 ORTHO05D006975 3.0e-33 145.6 130 59.2
FAN01G0309 Fragaria x ananassa HOM05D001932 ORTHO05D006975 3.9e-33 145.2 130 60.0
GSVIVG01032805001 Vitis vinifera HOM05D005616 ORTHO05D006975 3.9e-33 145.2 130 60.8
Migut.F00691 Erythranthe guttata HOM05D005616 ORTHO05D006975 8.7e-33 144.1 130 57.7
Gohir.A10G237500 Gossypium hirsutum HOM05D005616 ORTHO05D006975 8.7e-33 144.1 130 60.0
Prupe.2G251100 Prunus persica HOM05D005616 ORTHO05D006975 8.7e-33 144.1 130 58.5
TPR.G11210 Trifolium pratense HOM05D005616 ORTHO05D006975 8.7e-33 144.1 130 58.5
Lj6g0010776 Lotus japonicus HOM05D005616 ORTHO05D006975 1.1e-32 143.7 130 57.7
Medtr3g070890 Medicago truncatula HOM05D005616 ORTHO05D006975 1.1e-32 143.7 130 58.5
CAN.G370.83 Capsicum annuum HOM05D002257 ORTHO05D006975 1.5e-32 143.3 130 60.0
FAN10G3671 Fragaria x ananassa HOM05D005616 ORTHO05D006975 1.5e-32 143.3 130 60.0
Cc02_g06410 Coffea canephora HOM05D005616 ORTHO05D006975 2.5e-32 142.5 130 60.8
COL.COLO4_25743 Corchorus olitorius HOM05D005616 ORTHO05D006975 3.3e-32 142.1 130 59.2
Thecc.10G015200 Theobroma cacao HOM05D005616 ORTHO05D006975 4.3e-32 141.7 130 58.5
VMungo1383G1171 Vigna mungo HOM05D005616 ORTHO05D006975 4.3e-32 141.7 130 57.7
arahy.Tifrunner.gnm1.ann1.061K9L Arachis hypogaea HOM05D005616 ORTHO05D006975 5.6e-32 141.4 130 56.9
Psat5g129880 Pisum sativum HOM05D005616 ORTHO05D006975 5.6e-32 141.4 130 58.5
FvH4_4g21980 Fragaria vesca HOM05D005616 ORTHO05D006975 7.4e-32 141.0 129 59.7
FAN12G0831 Fragaria x ananassa HOM05D005616 ORTHO05D006975 7.4e-32 141.0 129 59.7
Medtr3g449480 Medicago truncatula HOM05D005616 ORTHO05D006975 7.4e-32 141.0 130 57.7
Sc10g0002410 Simmondsia chinensis HOM05D005616 ORTHO05D006975 9.6e-32 140.6 130 56.2
Solyc02g076760.3 Solanum lycopersicum HOM05D005616 ORTHO05D006975 9.6e-32 140.6 130 57.7
PGSC0003DMG400010237 Solanum tuberosum HOM05D005616 ORTHO05D006975 9.6e-32 140.6 130 58.5
arahy.Tifrunner.gnm1.ann1.R92L2M Arachis hypogaea HOM05D005616 ORTHO05D006975 1.3e-31 140.2 130 56.2
Sopen02g021670 Solanum pennellii HOM05D005616 ORTHO05D006975 1.3e-31 140.2 130 57.7
MSTRG.8961 Avicennia marina HOM05D005616 ORTHO05D006975 1.6e-31 139.8 130 56.9
Eucgr.J00201 Eucalyptus grandis HOM05D005616 ORTHO05D006975 1.6e-31 139.8 130 59.2
HanXRQChr08g0222401 Helianthus annuus HOM05D005616 ORTHO05D006975 1.6e-31 139.8 130 56.2
CSS0019139 Camellia sinensis var. sinensis HOM05D005616 ORTHO05D006975 2.1e-31 139.4 130 57.7
Nitab4.5_0003454g0010 Nicotiana tabacum HOM05D005616 ORTHO05D006975 2.1e-31 139.4 130 59.2
Nitab4.5_0005018g0020 Nicotiana tabacum HOM05D005616 ORTHO05D006975 2.1e-31 139.4 130 59.2
CSS0002000 Camellia sinensis var. sinensis HOM05D005616 ORTHO05D006975 2.8e-31 139.0 130 57.7
CSS0029859 Camellia sinensis var. sinensis HOM05D005616 ORTHO05D006975 2.8e-31 139.0 130 57.7
Dinv10614 Davidia involucrata HOM05D005616 ORTHO05D006975 2.8e-31 139.0 130 57.7
TAR369G1110 Trochodendron aralioides HOM05D005616 ORTHO05D006975 2.8e-31 139.0 129 59.7
Gorai.012G116600 Gossypium raimondii HOM05D005616 ORTHO05D006975 6.2e-31 137.9 130 56.9
MBI19_g36756_MAGBIO Magnolia biondii HOM05D005616 ORTHO05D006975 6.2e-31 137.9 130 56.2
PSO017G0320 Papaver somniferum HOM05D005616 ORTHO05D006975 8.1e-31 137.5 130 56.2
TWI09G1208 Tripterygium wilfordii HOM05D005616 ORTHO05D006975 1.1e-30 137.1 130 58.5
DCAR_023439 Daucus carota HOM05D005616 ORTHO05D006975 1.8e-30 136.3 130 56.2
Gohir.D04G132700 Gossypium hirsutum HOM05D005616 ORTHO05D006975 1.8e-30 136.3 130 56.2
AUR62012260 Chenopodium quinoa HOM05D005616 ORTHO05D006975 2.4e-30 136.0 130 55.4
Gohir.A04G093400 Gossypium hirsutum HOM05D005616 ORTHO05D006975 2.4e-30 136.0 130 56.9
CANSAT78G1638 Cannabis sativa HOM05D005616 ORTHO05D006975 4.0e-30 135.2 130 54.6
Peaxi162Scf00284g01041 Petunia axillaris HOM05D005616 ORTHO05D006975 4.0e-30 135.2 130 56.2
Peaxi162Scf00801g00729 Petunia axillaris HOM05D005616 ORTHO05D006975 4.0e-30 135.2 130 56.2
vmacro06962 Vaccinium macrocarpon HOM05D005616 ORTHO05D006975 4.0e-30 135.2 130 56.2
Nitab4.5_0010803g0020 Nicotiana tabacum HOM05D005616 ORTHO05D006975 5.3e-30 134.8 130 57.7
THA.LOC104816542 Tarenaya hassleriana HOM05D005616 ORTHO05D006975 5.3e-30 134.8 130 55.4
PGSC0003DMG401008474 Solanum tuberosum HOM05D005616 ORTHO05D006975 6.9e-30 134.4 130 57.7
Aa31LG11G6640 Aethionema arabicum HOM05D005616 ORTHO05D006975 9.0e-30 134.0 130 54.6
PSO675G8834 Papaver somniferum HOM05D005616 ORTHO05D006975 9.0e-30 134.0 130 54.6
SGA_v2.0_scaffold105G30487 Striga asiatica HOM05D005616 ORTHO05D006975 9.0e-30 134.0 130 56.2
ECA233G4091 Erigeron canadensis HOM05D005616 ORTHO05D006975 2.0e-29 132.9 130 53.8
Oeu004695.1 Olea europaea HOM05D005616 ORTHO05D006975 2.0e-29 132.9 130 55.4
PGR044G0338 Punica granatum HOM05D005616 ORTHO05D006975 2.0e-29 132.9 130 55.4
SalBow6G5046 Salvia bowleyana HOM05D005616 ORTHO05D006975 2.0e-29 132.9 130 54.6
Sopen06g017380 Solanum pennellii HOM05D005616 ORTHO05D006975 2.0e-29 132.9 130 56.9
TAR623G1070 Trochodendron aralioides HOM05D005616 ORTHO05D006975 2.0e-29 132.9 130 55.4
Lsat_1_v5_gn_8_11701 Lactuca sativa HOM05D005616 ORTHO05D006975 3.4e-29 132.1 130 54.6
AUR62028615 Chenopodium quinoa HOM05D005616 ORTHO05D006975 5.8e-29 131.3 131 54.2
EL10Ac1g02124 Beta vulgaris HOM05D005616 ORTHO05D006975 7.6e-29 131.0 130 53.8
Solyc06g051410.4 Solanum lycopersicum HOM05D005616 ORTHO05D006975 7.6e-29 131.0 130 56.2
unitig_0.g2023 Utricularia gibba HOM05D005616 ORTHO05D006975 7.6e-29 131.0 130 53.8
AUR62022893 Chenopodium quinoa HOM05D005616 ORTHO05D006975 9.9e-29 130.6 130 54.6
PSO384G3782 Papaver somniferum HOM05D005616 ORTHO05D006975 9.9e-29 130.6 130 53.8
AT1G07780 Arabidopsis thaliana HOM05D005616 ORTHO05D006975 2.2e-28 129.4 130 52.3
Duzib128G0549 Durio zibethinus HOM05D005616 ORTHO05D006975 2.2e-28 129.4 130 54.6
AT5G05590 Arabidopsis thaliana HOM05D005616 ORTHO05D006975 2.9e-28 129.0 130 52.3
SGA_v2.0_scaffold60G21012 Striga asiatica HOM05D005616 ORTHO05D006975 2.9e-28 129.0 130 54.6
SHI03421 Sapria himalayana HOM05D005616 ORTHO05D006975 3.8e-28 128.6 130 52.3
PSO339G0515 Papaver somniferum HOM05D005616 ORTHO05D006975 4.9e-28 128.3 130 53.1
MELO3C026789.2 Cucumis melo HOM05D005616 ORTHO05D006975 6.4e-28 127.9 130 52.3
AL6G15480 Arabidopsis lyrata HOM05D005616 ORTHO05D006975 1.1e-27 127.1 130 52.3
CARHR034480 Cardamine hirsuta HOM05D005616 ORTHO05D006975 1.9e-27 126.3 130 53.8
CsaV3_5G010220 Cucumis sativus L. HOM05D005616 ORTHO05D006975 3.2e-27 125.6 130 50.8
Hund13869 Selenicereus undatus HOM05D005616 ORTHO05D006975 3.2e-27 125.6 130 50.8
Carub.0006s0449 Capsella rubella HOM05D005616 ORTHO05D006975 4.2e-27 125.2 130 51.5
Aqoxy5G03614 Aquilegia oxysepala HOM05D005616 ORTHO05D006975 9.3e-27 124.0 130 51.5
Aqoxy4G02536 Aquilegia oxysepala HOM05D005616 ORTHO05D006975 1.2e-26 123.6 130 51.5
Thhalv10014368m.g Eutrema salsugineum HOM05D005616 ORTHO05D006975 1.6e-26 123.2 130 50.8
BcaB05g21698 Brassica carinata HOM05D005616 ORTHO05D006975 2.1e-26 122.9 130 52.3
BraA02t04856Z Brassica rapa HOM05D005616 ORTHO05D006975 3.5e-26 122.1 130 52.3
Sp6g37270 Schrenkiella parvula HOM05D005616 ORTHO05D006975 4.6e-26 121.7 130 50.0
C02p02440 Brassica napus HOM05D005616 ORTHO05D006975 6.0e-26 121.3 131 51.9
ClCG07G004280 Citrullus lanatus HOM05D005616 ORTHO05D006975 6.0e-26 121.3 130 50.8
Gohir.D10G249200 Gossypium hirsutum HOM05D005616 ORTHO05D006975 7.9e-26 120.9 130 51.5
BcaB05g21694 Brassica carinata HOM05D005616 ORTHO05D006975 1.0e-25 120.6 130 51.5
Sed0025730 Sechium edule HOM05D005616 ORTHO05D006975 1.0e-25 120.6 130 50.8
AT1G29410 Arabidopsis thaliana HOM05D005616 ORTHO05D006975 1.3e-25 120.2 131 49.6
Gorai.011G289500 Gossypium raimondii HOM05D005616 ORTHO05D006975 1.8e-25 119.8 130 50.8
BolC2t06207H Brassica oleracea HOM05D005616 ORTHO05D006975 5.1e-25 118.2 130 50.8
HPP92_011508 Vanilla planifolia HOM05D005616 ORTHO05D006975 1.6e-23 113.2 131 46.6
ATR0730G169 Amborella trichopoda HOM05D005616 ORTHO05D006975 8.2e-23 110.9 131 46.6
SEGI_33372 Sequoiadendron giganteum HOM05D005616 ORTHO05D006975 1.5e-21 106.7 131 45.0
Os02g0266000 Oryza sativa ssp. japonica HOM05D005616 ORTHO05D006975 2.2e-20 102.8 130 43.8
CiPaw.01G059100 Carya illinoinensis HOM05D005616 ORTHO05D006975 4.9e-20 101.7 108 51.9
DCAR_029632 Daucus carota HOM05D000090 ORTHO05D001584 4.2e-19 98.6 116 46.6
Aqoxy332s005 Aquilegia oxysepala HOM05D005616 ORTHO05D006975 9.3e-19 97.4 132 43.9
Zm00001eb203980 Zea mays HOM05D005616 ORTHO05D006975 6.0e-18 94.7 130 45.4
Zm00001eb281510 Zea mays HOM05D005616 ORTHO05D006975 1.0e-17 94.0 130 43.1
Dinv21739 Davidia involucrata HOM05D005616 ORTHO05D006975 9.7e-16 87.4 54 74.1
Pp3c17_23550 Physcomitrium patens HOM05D005616 ORTHO05D006975 2.8e-15 85.9 133 39.8
AagrBONN_evm.TU.Sc2ySwM_228.1039 Anthoceros agrestis HOM05D005616 ORTHO05D006975 3.7e-15 85.5 130 36.9
Mapoly0041s0067 Marchantia polymorpha HOM05D005616 ORTHO05D006975 1.1e-14 84.0 130 36.9
Nn2g13147 Nelumbo nucifera HOM05D005616 ORTHO05D006975 4.5e-13 78.6 54 72.2
CDE02G4500 Ceratophyllum demersum HOM05D005293 ORTHO05D006764 4.2e-11 72.0 130 36.2
SMO364G0619 Selaginella moellendorffii HOM05D005616 ORTHO05D006975 1.6e-10 70.1 133 34.6
FAN17G0984 Fragaria x ananassa HOM05D002859 ORTHO05D003120 4.6e-10 68.6 45 73.3
Atru.chr7.2145 Acer truncatum HOM05D005616 ORTHO05D006975 7.9e-10 67.8 44 75.0
Cre12.g519000 Chlamydomonas reinhardtii HOM05D005616 ORTHO05D006975 1.5e-08 63.5 137 35.8
MCO02G328 Micromonas commoda HOM05D005616 ORTHO05D006975 2.0e-08 63.2 157 27.4
MSTRG.13829 Avicennia marina HOM05D005616 ORTHO05D006975 1.7e-07 60.1 54 57.4


User provided reference genes

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