Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.014G187000 Populus trichocarpa HOM05D004639 ORTHO05D005201 2.2e-132 475.7 250 100.0
Potri.014G187300 Populus trichocarpa HOM05D004639 ORTHO05D005201 1.6e-130 469.5 250 99.2
Potri.014G189400 Populus trichocarpa HOM05D004639 ORTHO05D005201 1.8e-126 456.1 250 94.4
Sabra19G0061000 Salix brachista HOM05D004639 ORTHO05D005201 2.0e-109 399.4 250 82.0
Sabra19G0060900 Salix brachista HOM05D004639 ORTHO05D005201 3.4e-109 398.7 250 82.4
SabraUnG0000200 Salix brachista HOM05D004639 ORTHO05D005201 2.0e-106 389.4 233 82.4
SabraUnG0000100 Salix brachista HOM05D004639 ORTHO05D005201 4.6e-106 388.3 231 82.7
Sabra19G0060200 Salix brachista HOM05D004639 ORTHO05D005201 1.4e-94 350.1 253 75.5
Potri.014G187766 Populus trichocarpa HOM05D004639 ORTHO05D005201 7.1e-91 337.8 196 88.3
Sabra19G0060700 Salix brachista HOM05D004639 ORTHO05D005201 2.4e-83 312.8 156 92.3
Sabra19G0060600 Salix brachista HOM05D004639 ORTHO05D005201 9.0e-62 241.1 165 78.8
Carub.0003s0750 Capsella rubella HOM05D004639 ORTHO05D005201 5.7e-56 221.9 156 64.1
DCAR_016067 Daucus carota HOM05D004639 ORTHO05D005201 1.6e-55 220.3 172 59.9
C07p01740 Brassica napus HOM05D004639 ORTHO05D005201 2.8e-55 219.5 156 64.1
BolC7t40577H Brassica oleracea HOM05D004639 ORTHO05D005201 2.8e-55 219.5 156 64.1
MBI03_g13041_MAGBIO Magnolia biondii HOM05D004639 ORTHO05D005201 4.8e-55 218.8 161 62.7
AL3G19300 Arabidopsis lyrata HOM05D004639 ORTHO05D005201 1.4e-54 217.2 156 62.8
Sp3g06840 Schrenkiella parvula HOM05D004639 ORTHO05D005201 1.4e-54 217.2 156 64.1
Thhalv10020704m.g Eutrema salsugineum HOM05D004639 ORTHO05D005201 1.8e-54 216.9 156 63.5
MD00G1164900 Malus domestica HOM05D004639 ORTHO05D005201 3.1e-54 216.1 154 63.6
A07p00740 Brassica napus HOM05D004639 ORTHO05D005201 6.9e-54 214.9 156 62.8
Ciclev10028470m.g Citrus clementina HOM05D004639 ORTHO05D005201 1.2e-53 214.2 152 65.8
BraA07t27872Z Brassica rapa HOM05D004639 ORTHO05D005201 1.5e-53 213.8 156 62.8
THA.LOC104805811 Tarenaya hassleriana HOM05D004639 ORTHO05D005201 1.5e-53 213.8 164 59.1
RcHm_v2.0_Chr3g0497491 Rosa chinensis HOM05D004639 ORTHO05D005201 2.0e-53 213.4 161 63.4
Nitab4.5_0010824g0010 Nicotiana tabacum HOM05D004639 ORTHO05D005201 2.6e-53 213.0 159 61.0
Sopen02g005400 Solanum pennellii HOM05D004639 ORTHO05D005201 2.6e-53 213.0 193 55.4
Solyc02g021100.3 Solanum lycopersicum HOM05D004639 ORTHO05D005201 4.5e-53 212.2 193 55.4
BcaB04g16901 Brassica carinata HOM05D004639 ORTHO05D005201 1.0e-52 211.1 156 61.5
CAN.G989.2 Capsicum annuum HOM05D004639 ORTHO05D005201 1.0e-52 211.1 162 59.9
Thecc.04G056700 Theobroma cacao HOM05D004639 ORTHO05D005201 1.0e-52 211.1 154 64.3
Aqoxy4G01839 Aquilegia oxysepala HOM05D004639 ORTHO05D005201 1.3e-52 210.7 192 53.6
Aa31LG5G18470 Aethionema arabicum HOM05D004639 ORTHO05D005201 1.7e-52 210.3 181 54.1
Oeu061992.1 Olea europaea HOM05D004639 ORTHO05D005201 1.7e-52 210.3 152 61.8
arahy.Tifrunner.gnm1.ann1.CP937L Arachis hypogaea HOM05D004639 ORTHO05D005201 2.9e-52 209.5 155 60.0
arahy.Tifrunner.gnm1.ann1.GWL1KB Arachis hypogaea HOM05D004639 ORTHO05D005201 2.9e-52 209.5 155 60.0
Actinidia23035 Actinidia chinensis HOM05D004639 ORTHO05D005201 5.0e-52 208.8 156 60.9
Peaxi162Scf00331g00311 Petunia axillaris HOM05D004639 ORTHO05D005201 6.5e-52 208.4 158 60.8
Rhsim11G0007200 Rhododendron simsii HOM05D004639 ORTHO05D005201 6.5e-52 208.4 154 64.3
Gohir.A09G007300 Gossypium hirsutum HOM05D004639 ORTHO05D005201 8.5e-52 208.0 152 63.2
Lsat_1_v5_gn_3_140620 Lactuca sativa HOM05D004639 ORTHO05D005201 8.5e-52 208.0 160 58.8
Manes.18G143900 Manihot esculenta HOM05D004639 ORTHO05D005201 8.5e-52 208.0 154 62.3
Gorai.006G008100 Gossypium raimondii HOM05D004639 ORTHO05D005201 1.1e-51 207.6 152 63.2
Gohir.D09G006600 Gossypium hirsutum HOM05D004639 ORTHO05D005201 1.4e-51 207.2 152 63.2
Prupe.4G286600 Prunus persica HOM05D004639 ORTHO05D005201 1.4e-51 207.2 161 59.6
Cpa.g.sc15.68 Carica papaya HOM05D004639 ORTHO05D005201 1.9e-51 206.8 156 60.9
Migut.A01100 Erythranthe guttata HOM05D004639 ORTHO05D005201 1.9e-51 206.8 156 62.2
Nitab4.5_0001799g0030 Nicotiana tabacum HOM05D004639 ORTHO05D005201 2.5e-51 206.5 159 61.0
Phvul.L000400 Phaseolus vulgaris HOM05D004639 ORTHO05D005201 2.5e-51 206.5 154 62.3
Lj2g0020909 Lotus japonicus HOM05D004639 ORTHO05D005201 4.2e-51 205.7 217 47.9
Dinv01634 Davidia involucrata HOM05D004639 ORTHO05D005201 5.5e-51 205.3 155 62.6
Cc00_g06760 Coffea canephora HOM05D004639 ORTHO05D005201 1.2e-50 204.1 165 57.6
Glyma.13G009500 Glycine max HOM05D004639 ORTHO05D005201 1.2e-50 204.1 157 61.1
FvH4_1g27870 Fragaria vesca HOM05D004639 ORTHO05D005201 2.7e-50 203.0 152 62.5
FAN26G1776 Fragaria x ananassa HOM05D004639 ORTHO05D005201 2.7e-50 203.0 152 62.5
Atru.chr9.65 Acer truncatum HOM05D004639 ORTHO05D005201 4.6e-50 202.2 160 60.0
SGA_v2.0_scaffold291G47333 Striga asiatica HOM05D004639 ORTHO05D005201 4.6e-50 202.2 157 59.2
PSO384G4518 Papaver somniferum HOM05D004639 ORTHO05D005201 6.1e-50 201.8 155 61.3
PSO493G0020 Papaver somniferum HOM05D004639 ORTHO05D005201 6.1e-50 201.8 155 61.3
FAN19G3130 Fragaria x ananassa HOM05D004639 ORTHO05D005201 7.9e-50 201.4 152 61.8
QL01p053168 Quercus lobata HOM05D004639 ORTHO05D005201 3.0e-49 199.5 153 58.8
VMungo0540G1855 Vigna mungo HOM05D004639 ORTHO05D005201 3.0e-49 199.5 152 60.5
AUR62017756 Chenopodium quinoa HOM05D004639 ORTHO05D005201 6.7e-49 198.4 157 58.0
QL01p053770 Quercus lobata HOM05D004639 ORTHO05D005201 6.7e-49 198.4 153 58.8
SalBow6G0181 Salvia bowleyana HOM05D004639 ORTHO05D005201 6.7e-49 198.4 152 60.5
SalBow6G5700 Salvia bowleyana HOM05D004639 ORTHO05D005201 6.7e-49 198.4 152 60.5
GSVIVG01003641001 Vitis vinifera HOM05D004639 ORTHO05D005201 6.7e-49 198.4 179 52.5
ECA234G0087 Erigeron canadensis HOM05D004639 ORTHO05D005201 9.7e-48 194.5 156 56.4
ATR0068G005 Amborella trichopoda HOM05D004639 ORTHO05D005201 1.3e-47 194.1 182 51.6
HanXRQChr12g0386021 Helianthus annuus HOM05D004639 ORTHO05D005201 2.2e-47 193.4 148 56.1
Hma1.2p1_1077F.1_g254710 Hydrangea macrophylla HOM05D004639 ORTHO05D005201 3.7e-47 192.6 152 59.2
Sabra12G0026100 Salix brachista HOM05D004639 ORTHO05D005201 8.2e-47 191.4 145 60.7
vmacro04281 Vaccinium macrocarpon HOM05D004639 ORTHO05D005201 1.1e-46 191.0 154 59.7
MSTRG.8994 Avicennia marina HOM05D004639 ORTHO05D005201 1.8e-46 190.3 157 58.6
HPP92_007024 Vanilla planifolia HOM05D004639 ORTHO05D005201 2.4e-46 189.9 148 61.5
Potri.012G037700 Populus trichocarpa HOM05D004639 ORTHO05D005201 3.1e-46 189.5 145 60.7
vmacro22429 Vaccinium macrocarpon HOM05D004639 ORTHO05D005201 3.1e-46 189.5 156 59.0
Ah.05g167280 Amaranthus hybridus HOM05D001485 ORTHO05D001407 5.3e-46 188.7 153 56.9
HanXRQChr16g0532761 Helianthus annuus HOM05D004639 ORTHO05D005201 5.3e-46 188.7 148 54.7
CANSAT64G1383 Cannabis sativa HOM05D004639 ORTHO05D005201 6.9e-46 188.3 151 57.6
CANSAT64G2443 Cannabis sativa HOM05D004639 ORTHO05D005201 6.9e-46 188.3 151 57.6
Lj2g0022882 Lotus japonicus HOM05D004639 ORTHO05D005201 1.2e-45 187.6 180 51.7
Medtr0037s0250 Medicago truncatula HOM05D004639 ORTHO05D005201 1.5e-45 187.2 182 50.5
SEGI_27362 Sequoiadendron giganteum HOM05D004639 ORTHO05D005201 1.5e-45 187.2 149 57.7
TWI15G1026 Tripterygium wilfordii HOM05D004639 ORTHO05D005201 1.5e-45 187.2 153 56.9
TAR376G0371 Trochodendron aralioides HOM05D004639 ORTHO05D005201 1.5e-45 187.2 152 57.9
CANSAT64G2852 Cannabis sativa HOM05D004639 ORTHO05D005201 2.0e-45 186.8 152 57.2
TWI31G0951 Tripterygium wilfordii HOM05D004639 ORTHO05D005201 2.0e-45 186.8 153 57.5
EL10As7g23724 Beta vulgaris HOM05D004639 ORTHO05D005201 1.0e-44 184.5 159 56.0
ECA234G3785 Erigeron canadensis HOM05D004639 ORTHO05D005201 1.3e-44 184.1 202 45.5
PGR031G3121 Punica granatum HOM05D004639 ORTHO05D005201 1.7e-44 183.7 160 53.8
CsaV3_5G037160 Cucumis sativus L. HOM05D004639 ORTHO05D005201 3.8e-44 182.6 187 49.7
MELO3C022885.2 Cucumis melo HOM05D004639 ORTHO05D005201 5.0e-44 182.2 189 48.1
ClCG08G005050 Citrullus lanatus HOM05D004639 ORTHO05D005201 1.1e-43 181.0 189 47.1
HPP92_007076 Vanilla planifolia HOM05D004639 ORTHO05D005201 1.9e-43 180.3 141 63.1
Medtr0037s0060 Medicago truncatula HOM05D004639 ORTHO05D005201 3.2e-43 179.5 183 49.2
SHI25031 Sapria himalayana HOM05D004639 ORTHO05D005201 1.6e-42 177.2 148 56.1
BcaC08g44553 Brassica carinata HOM05D004639 ORTHO05D005201 3.0e-41 172.9 163 54.6
Eucgr.B01580 Eucalyptus grandis HOM05D004639 ORTHO05D005201 5.1e-41 172.2 152 53.9
CiPaw.15G093500 Carya illinoinensis HOM05D004639 ORTHO05D005201 9.7e-40 167.9 138 57.2
Sabra19G0060300 Salix brachista HOM05D004639 ORTHO05D005201 9.7e-40 167.9 89 87.6
Hund25534 Selenicereus undatus HOM05D004639 ORTHO05D005201 2.2e-39 166.8 135 56.3
Nn5g27169 Nelumbo nucifera HOM05D004639 ORTHO05D005201 2.8e-39 166.4 152 53.9
Lalb_Chr00c23g0406301 Lupinus albus HOM05D004639 ORTHO05D005201 1.8e-38 163.7 152 52.6
Mapoly0049s0024 Marchantia polymorpha HOM05D004639 ORTHO05D005201 2.4e-38 163.3 136 54.4
CDE02G2478 Ceratophyllum demersum HOM05D004639 ORTHO05D005201 5.3e-38 162.2 152 50.0
BcaC06g36658 Brassica carinata HOM05D004639 ORTHO05D005201 4.5e-37 159.1 123 60.2
Lj2g0018447 Lotus japonicus HOM05D004639 ORTHO05D005201 1.3e-36 157.5 157 44.6
Os09g0101100 Oryza sativa ssp. japonica HOM05D004639 ORTHO05D005201 2.2e-36 156.8 191 42.9
CBR_g51322 Chara braunii HOM05D004639 ORTHO05D005201 1.1e-35 154.5 136 52.2
Nitab4.5_0000843g0080 Nicotiana tabacum HOM05D004639 ORTHO05D005201 1.4e-35 154.1 124 61.3
Pp3c15_4380 Physcomitrium patens HOM05D004639 ORTHO05D005201 1.9e-35 153.7 135 49.6
Zm00001eb264110 Zea mays HOM05D004639 ORTHO05D005201 1.9e-35 153.7 189 42.3
Duzib235G0802 Durio zibethinus HOM05D004639 ORTHO05D005201 2.5e-35 153.3 123 59.3
AUR62032895 Chenopodium quinoa HOM05D004639 ORTHO05D005201 7.9e-34 148.3 157 48.4
Sc22g0004560 Simmondsia chinensis HOM05D004639 ORTHO05D005201 2.8e-31 139.8 168 44.0
C06p20180 Brassica napus HOM05D004639 ORTHO05D005201 6.3e-31 138.7 156 46.8
BolC6t37199H Brassica oleracea HOM05D004639 ORTHO05D005201 6.3e-31 138.7 156 46.8
SMO334G0025 Selaginella moellendorffii HOM05D004639 ORTHO05D005201 1.1e-30 137.9 133 45.9
unitig_22.g6364 Utricularia gibba HOM05D004639 ORTHO05D005201 1.1e-30 137.9 125 55.2
CARHR082670 Cardamine hirsuta HOM05D004639 ORTHO05D005201 4.1e-30 136.0 99 61.6
QL01p052883 Quercus lobata HOM05D011240 ORTHO05D005201 3.5e-29 132.9 99 58.6
TPR.G9531 Trifolium pratense HOM05D004639 ORTHO05D005201 2.2e-28 130.2 99 59.6
Dinv08242 Davidia involucrata HOM05D004639 ORTHO05D005201 3.8e-28 129.4 98 60.2
PRCOL_00006916 Prasinoderma coloniale HOM05D004639 ORTHO05D005201 6.7e-25 118.6 134 44.0
Sed0017627 Sechium edule HOM05D004639 ORTHO05D005201 1.5e-24 117.5 120 46.7
Cre05.g234250 Chlamydomonas reinhardtii HOM05D004639 ORTHO05D005201 2.0e-24 117.1 133 43.6
Lalb_Chr18g0049251 Lupinus albus HOM05D004639 ORTHO05D005201 3.3e-24 116.3 98 55.1
HPP92_015991 Vanilla planifolia HOM05D004639 ORTHO05D005201 5.7e-24 115.5 98 55.1
Lalb_Chr00c55g0413711 Lupinus albus HOM05D004639 ORTHO05D005201 7.5e-24 115.2 103 53.4
CBR_g37349 Chara braunii HOM05D000004 ORTHO05D000002 7.2e-19 98.6 102 44.1
COL.COLO4_05916 Corchorus olitorius HOM05D004639 ORTHO05D005201 1.6e-18 97.4 121 43.0
Gohir.D02G140450 Gossypium hirsutum HOM05D004639 ORTHO05D005201 8.0e-18 95.1 67 62.7
QL93p0107_0438 Quercus lobata HOM05D004639 ORTHO05D005201 1.4e-17 94.4 56 69.6
Gorai.005G156200 Gossypium raimondii HOM05D004639 ORTHO05D005201 3.4e-16 89.7 67 59.7
CARHR082660 Cardamine hirsuta HOM05D004639 ORTHO05D005201 3.7e-15 86.3 58 65.5
AT3G07930 Arabidopsis thaliana HOM05D004639 ORTHO05D005201 2.4e-14 83.6 62 61.3
TPR.G22982 Trifolium pratense HOM05D004639 ORTHO05D005201 1.6e-13 80.9 85 48.2
CSS0021628 Camellia sinensis var. sinensis HOM05D004639 ORTHO05D005201 2.3e-12 77.0 53 67.9
Haze_08020 Corylus avellana HOM05D004639 ORTHO05D005201 6.5e-12 75.5 56 60.7
CSS0047186 Camellia sinensis var. sinensis HOM05D004639 ORTHO05D005201 8.6e-12 75.1 101 40.6
Psat1g014800 Pisum sativum HOM05D004639 ORTHO05D005201 4.2e-11 72.8 60 55.0
QL01p054228 Quercus lobata HOM05D004639 ORTHO05D005201 2.1e-10 70.5 55 58.2
Medtr6g033105 Medicago truncatula HOM05D004639 ORTHO05D005201 6.1e-10 68.9 66 53.0
QL02p058806 Quercus lobata HOM05D004639 ORTHO05D005201 6.1e-10 68.9 55 56.4
FAN23G0569 Fragaria x ananassa HOM05D004639 ORTHO05D005201 8.8e-09 65.1 65 50.8
unitig_22.g6365 Utricularia gibba HOM05D004639 ORTHO05D005201 3.4e-08 63.2 57 52.6
AagrBONN_evm.TU.Sc2ySwM_228.991 Anthoceros agrestis HOM05D004639 ORTHO05D005201 7.5e-08 62.0 96 36.5
Medtr6g034730 Medicago truncatula HOM05D004639 ORTHO05D005201 7.5e-08 62.0 65 44.6
HPP92_015994 Vanilla planifolia HOM05D004639 ORTHO05D005201 2.4e-06 57.0 32 68.8
Cfa026891 Carpinus fangiana HOM05D003606 ORTHO05D004650 5.4e-06 55.8 250 24.4
SHI28181 Sapria himalayana HOM05D000002 ORTHO05D000047 9.2e-06 55.1 34 64.7


User provided reference genes

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