Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.014G182410 Populus trichocarpa HOM05D005635 ORTHO05D006838 1.6e-77 292.7 156 100.0
Potri.013G128300 Populus trichocarpa HOM05D005635 ORTHO05D006838 2.7e-32 142.5 126 62.7
Cpa.g.sc9.387 Carica papaya HOM05D005635 ORTHO05D006838 1.8e-31 139.8 130 56.9
QL10p057166 Quercus lobata HOM05D005635 ORTHO05D006838 3.7e-29 132.1 159 48.4
QL10p057536 Quercus lobata HOM05D005635 ORTHO05D006838 3.7e-29 132.1 159 48.4
BcaB02g07447 Brassica carinata HOM05D005635 ORTHO05D006838 5.3e-28 128.3 124 50.8
AL5G41820 Arabidopsis lyrata HOM05D005635 ORTHO05D006838 1.2e-27 127.1 123 48.8
Sp5g03370 Schrenkiella parvula HOM05D005635 ORTHO05D006838 2.0e-27 126.3 123 49.6
BraA07t30126Z Brassica rapa HOM05D005635 ORTHO05D006838 2.6e-27 125.9 124 50.8
CANSAT56G0139 Cannabis sativa HOM05D005635 ORTHO05D006838 4.5e-27 125.2 121 54.5
Cfa015678 Carpinus fangiana HOM05D005635 ORTHO05D006838 2.9e-26 122.5 123 54.5
VMungo1383G0014 Vigna mungo HOM05D005635 ORTHO05D006838 5.0e-26 121.7 124 51.6
Haze_00856 Corylus avellana HOM05D005635 ORTHO05D006838 2.5e-25 119.4 123 53.7
THA.LOC104802334 Tarenaya hassleriana HOM05D005635 ORTHO05D006838 9.4e-25 117.5 124 46.8
Phvul.001G267200 Phaseolus vulgaris HOM05D005635 ORTHO05D006838 1.2e-24 117.1 124 49.2
BolC6t37802H Brassica oleracea HOM05D005635 ORTHO05D006838 2.1e-24 116.3 124 48.4
BcaC08g45005 Brassica carinata HOM05D005635 ORTHO05D006838 1.4e-23 113.6 124 47.6
C06p26400 Brassica napus HOM05D005635 ORTHO05D006838 1.4e-23 113.6 124 47.6
Carub.0005s2649 Capsella rubella HOM05D005635 ORTHO05D006838 1.1e-22 110.5 145 40.0
MD15G1148200 Malus domestica HOM05D005635 ORTHO05D006838 2.0e-22 109.8 126 46.0
AT3G59780 Arabidopsis thaliana HOM05D005635 ORTHO05D006838 2.6e-22 109.4 104 50.0
Aa31LG10G14030 Aethionema arabicum HOM05D005635 ORTHO05D006838 3.3e-22 109.0 123 46.3
Peaxi162Scf00883g00320 Petunia axillaris HOM05D005635 ORTHO05D006838 9.7e-22 107.5 126 44.4
Manes.05G131200 Manihot esculenta HOM05D005635 ORTHO05D006838 1.7e-21 106.7 126 50.8
arahy.Tifrunner.gnm1.ann1.KV01DF Arachis hypogaea HOM05D005635 ORTHO05D006838 2.2e-21 106.3 125 48.0
Potri.019G098001 Populus trichocarpa HOM05D005635 ORTHO05D006838 2.2e-21 106.3 68 83.8
arahy.Tifrunner.gnm1.ann1.0WSK8D Arachis hypogaea HOM05D005635 ORTHO05D006838 2.8e-21 105.9 125 48.0
MD02G1004500 Malus domestica HOM05D005635 ORTHO05D006838 3.7e-21 105.5 126 45.2
Medtr3g084030 Medicago truncatula HOM05D005635 ORTHO05D006838 1.4e-20 103.6 122 44.3
Ca_16400_v3 Cicer arietinum L. HOM05D005635 ORTHO05D006838 7.0e-20 101.3 125 44.8
Nn7g37529 Nelumbo nucifera HOM05D005635 ORTHO05D006838 7.0e-20 101.3 126 44.4
Sabra13G0107200 Salix brachista HOM05D005635 ORTHO05D006838 9.1e-20 100.9 126 46.8
Atru.chr4.1471 Acer truncatum HOM05D005635 ORTHO05D006838 5.9e-19 98.2 126 44.4
CiPaw.01G169400 Carya illinoinensis HOM05D005635 ORTHO05D006838 5.9e-19 98.2 123 45.5
AUR62023776 Chenopodium quinoa HOM05D005635 ORTHO05D006838 5.9e-19 98.2 124 41.1
AUR62002413 Chenopodium quinoa HOM05D005635 ORTHO05D006838 1.3e-18 97.1 125 40.8
EL10Ac3g06107 Beta vulgaris HOM05D005635 ORTHO05D006838 1.4e-17 93.6 122 37.7
Glyma.18G001800 Glycine max HOM05D005635 ORTHO05D006838 1.4e-17 93.6 124 43.5
TAR362G0201 Trochodendron aralioides HOM05D005635 ORTHO05D006838 3.2e-17 92.4 125 44.8
GSVIVG01038182001 Vitis vinifera HOM05D005635 ORTHO05D006838 3.2e-17 92.4 125 43.2
Hund22526 Selenicereus undatus HOM05D005635 ORTHO05D006838 7.2e-17 91.3 119 41.2
Aqoxy5G00015 Aquilegia oxysepala HOM05D005635 ORTHO05D006838 1.6e-16 90.1 124 39.5
DCAR_029617 Daucus carota HOM05D005635 ORTHO05D006838 1.6e-16 90.1 124 41.1
CAN.G207.4 Capsicum annuum HOM05D005635 ORTHO05D006838 2.7e-16 89.4 125 37.6
CARHR151070 Cardamine hirsuta HOM05D005635 ORTHO05D006838 2.7e-16 89.4 132 40.9
Thhalv10005829m.g Eutrema salsugineum HOM05D005635 ORTHO05D006838 6.1e-16 88.2 122 38.5
Prupe.7G266600 Prunus persica HOM05D005635 ORTHO05D006838 1.8e-15 86.7 126 38.1
CARHR183720 Cardamine hirsuta HOM05D005635 ORTHO05D006838 3.0e-15 85.9 90 48.9
Glyma.11G255300 Glycine max HOM05D005635 ORTHO05D006838 3.0e-15 85.9 124 41.9
ATR0743G254 Amborella trichopoda HOM05D005635 ORTHO05D006838 5.7e-14 81.6 118 36.4
A07p24820 Brassica napus HOM05D005635 ORTHO05D006838 5.7e-14 81.6 124 37.1
vmacro00684 Vaccinium macrocarpon HOM05D005635 ORTHO05D006838 5.7e-14 81.6 126 38.1
Duzib151G1049 Durio zibethinus HOM05D005635 ORTHO05D006838 9.7e-14 80.9 126 41.3
Eucgr.L00011 Eucalyptus grandis HOM05D005635 ORTHO05D006838 2.2e-13 79.7 70 60.0
TWI15G0946 Tripterygium wilfordii HOM05D005635 ORTHO05D006838 1.1e-12 77.4 126 37.3
Ca_19887_v3 Cicer arietinum L. HOM05D005635 ORTHO05D006838 1.4e-12 77.0 108 43.5
Dinv18319 Davidia involucrata HOM05D005635 ORTHO05D006838 1.4e-12 77.0 126 38.1
MBI07_g33481_MAGBIO Magnolia biondii HOM05D005635 ORTHO05D006838 1.8e-12 76.6 125 35.2
Lj6g0024009 Lotus japonicus HOM05D005635 ORTHO05D006838 4.1e-12 75.5 124 37.1
Gohir.D09G212700 Gossypium hirsutum HOM05D005635 ORTHO05D006838 7.0e-12 74.7 126 38.1
Gorai.006G232500 Gossypium raimondii HOM05D005635 ORTHO05D006838 7.0e-12 74.7 126 38.1
SalBow7G2884 Salvia bowleyana HOM05D005635 ORTHO05D006838 7.0e-12 74.7 117 37.6
SGA_v2.0_scaffold66G22529 Striga asiatica HOM05D005635 ORTHO05D006838 7.0e-12 74.7 118 35.6
TPR.G17194 Trifolium pratense HOM05D005635 ORTHO05D006838 7.0e-12 74.7 105 43.8
PSO832G1829 Papaver somniferum HOM05D005635 ORTHO05D006838 7.7e-11 71.2 155 32.9
ClCG08G017200 Citrullus lanatus HOM05D005635 ORTHO05D006838 2.2e-10 69.7 154 31.2
RcHm_v2.0_Chr2g0085171 Rosa chinensis HOM05D005635 ORTHO05D006838 2.2e-10 69.7 64 56.2
Psat5g100720 Pisum sativum HOM05D005635 ORTHO05D006838 3.8e-10 68.9 67 52.2
CSS0001444 Camellia sinensis var. sinensis HOM05D005635 ORTHO05D006838 1.1e-09 67.4 126 32.5
Sed0022147 Sechium edule HOM05D005635 ORTHO05D006838 1.1e-09 67.4 126 29.4
unitig_32.g10984 Utricularia gibba HOM05D005635 ORTHO05D006838 1.1e-09 67.4 115 35.7
Sopen03g013370 Solanum pennellii HOM05D005635 ORTHO05D006838 1.5e-09 67.0 125 32.8
Lj3C160T4 Lonicera japonica HOM05D005635 ORTHO05D006838 1.9e-09 66.6 130 33.8
Gohir.A09G213616 Gossypium hirsutum HOM05D005635 ORTHO05D006838 2.5e-09 66.2 126 34.9
FAN23G1844 Fragaria x ananassa HOM05D005635 ORTHO05D006838 3.2e-09 65.9 126 34.1
Hma1.2p1_1156F.1_g262300 Hydrangea macrophylla HOM05D005635 ORTHO05D006838 3.2e-09 65.9 62 54.8
Hma1.2p1_1156F.1_g262310 Hydrangea macrophylla HOM05D005635 ORTHO05D006838 3.2e-09 65.9 62 54.8
Atru.chr4.1500 Acer truncatum HOM05D005635 ORTHO05D006838 4.2e-09 65.5 102 39.2
CARHR170120 Cardamine hirsuta HOM05D005635 ORTHO05D006838 5.5e-09 65.1 56 53.6
FvH4_1g00540 Fragaria vesca HOM05D005635 ORTHO05D006838 7.2e-09 64.7 63 54.0
Lalb_Chr23g0278351 Lupinus albus HOM05D005635 ORTHO05D006838 7.2e-09 64.7 93 40.9
MELO3C010738.2 Cucumis melo HOM05D005635 ORTHO05D006838 9.4e-09 64.3 126 31.0
CsaV3_2G025410 Cucumis sativus L. HOM05D005635 ORTHO05D006838 9.4e-09 64.3 126 31.0
Solyc03g059180.4 Solanum lycopersicum HOM05D005635 ORTHO05D006838 9.4e-09 64.3 125 31.2
Sed0015570 Sechium edule HOM05D005635 ORTHO05D006838 1.6e-08 63.5 151 28.5
Oeu017118.1 Olea europaea HOM05D005635 ORTHO05D006838 2.1e-08 63.2 125 31.2
FAN26G0446 Fragaria x ananassa HOM05D005635 ORTHO05D006838 2.7e-08 62.8 63 52.4
FAN28G2262 Fragaria x ananassa HOM05D005635 ORTHO05D006838 3.6e-08 62.4 63 52.4
Zm00001eb144770 Zea mays HOM05D005635 ORTHO05D006838 3.6e-08 62.4 127 34.6
Duzib212G0953 Durio zibethinus HOM05D005635 ORTHO05D006838 8.0e-08 61.2 125 34.4
Rhsim09G0007900 Rhododendron simsii HOM05D005635 ORTHO05D006838 8.0e-08 61.2 125 32.8
Migut.D00990 Erythranthe guttata HOM05D005635 ORTHO05D006838 1.0e-07 60.8 113 32.7
Cc03_g14460 Coffea canephora HOM05D005635 ORTHO05D006838 1.8e-07 60.1 125 32.0
HPP92_007033 Vanilla planifolia HOM05D005635 ORTHO05D006838 3.3e-06 55.8 130 26.2
HPP92_007065 Vanilla planifolia HOM05D005635 ORTHO05D006838 3.3e-06 55.8 130 26.2
PSO210G4833 Papaver somniferum HOM05D005635 ORTHO05D006838 5.7e-06 55.1 67 44.8


User provided reference genes

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