Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.014G182232 Populus trichocarpa HOM05D018388 ORTHO05D003348 3.6e-160 568.2 278 100.0
Potri.006G172600 Populus trichocarpa HOM05D018388 ORTHO05D003348 1.3e-154 549.7 278 97.1
Potri.003G004301 Populus trichocarpa HOM05D018388 ORTHO05D003348 4.8e-96 355.1 176 94.3
Potri.001G165480 Populus trichocarpa HOM05D018388 ORTHO05D003348 8.1e-96 354.4 185 91.4
Potri.019G061550 Populus trichocarpa HOM05D006849 ORTHO05D003348 3.5e-30 136.3 61 90.2
MD04G1002000 Malus domestica HOM05D029265 ORTHO05D003348 5.4e-23 112.5 230 28.7
Potri.001G320601 Populus trichocarpa HOM05D018388 ORTHO05D003348 1.2e-22 111.3 61 72.1
MD17G1262000 Malus domestica HOM05D006849 ORTHO05D003348 7.3e-20 102.1 231 29.4
RcHm_v2.0_Chr2g0133251 Rosa chinensis HOM05D006849 ORTHO05D003348 1.2e-14 84.7 167 26.9
RcHm_v2.0_Chr2g0135141 Rosa chinensis HOM05D006849 ORTHO05D003348 3.0e-13 80.1 110 35.5
RcHm_v2.0_Chr2g0149141 Rosa chinensis HOM05D006849 ORTHO05D003348 3.0e-13 80.1 179 28.5
TWI63G1232 Tripterygium wilfordii HOM05D002907 ORTHO05D000065 2.5e-12 77.0 160 30.6
TWI31G0819 Tripterygium wilfordii HOM05D002907 ORTHO05D007430 4.3e-12 76.3 75 41.3
TWI39G0063 Tripterygium wilfordii HOM05D002907 ORTHO05D000065 4.3e-12 76.3 75 41.3
TWI38G0982 Tripterygium wilfordii HOM05D002907 ORTHO05D000065 5.6e-12 75.9 149 26.8
Os07g0190600 Oryza sativa ssp. japonica HOM05D008312 ORTHO05D007430 9.5e-12 75.1 216 25.5
Peaxi162Scf00005g02517 Petunia axillaris HOM05D002907 ORTHO05D005554 1.2e-11 74.7 116 32.8
Peaxi162Scf00386g00927 Petunia axillaris HOM05D002907 ORTHO05D005554 1.2e-11 74.7 116 32.8
TWI32G0194 Tripterygium wilfordii HOM05D002907 ORTHO05D000065 1.2e-11 74.7 149 26.2
TWI56G0628 Tripterygium wilfordii HOM05D002907 ORTHO05D000065 1.6e-11 74.3 149 25.5
TWI63G0188 Tripterygium wilfordii HOM05D002907 ORTHO05D000065 1.6e-11 74.3 176 29.5
TWI60G0328 Tripterygium wilfordii HOM05D002907 ORTHO05D007430 2.8e-11 73.6 75 37.3
TWI38G1001 Tripterygium wilfordii HOM05D002907 ORTHO05D000065 3.6e-11 73.2 82 37.8
RcHm_v2.0_Chr5g0010461 Rosa chinensis HOM05D006849 ORTHO05D003348 4.7e-11 72.8 219 23.7
TWI39G0710 Tripterygium wilfordii HOM05D002907 ORTHO05D000065 8.0e-11 72.0 82 37.8
MD10G1198900 Malus domestica HOM05D006849 ORTHO05D003348 1.1e-10 71.6 149 31.5
RcHm_v2.0_Chr7g0206181 Rosa chinensis HOM05D006849 ORTHO05D003348 1.4e-10 71.2 160 25.0
THA.LOC104813725 Tarenaya hassleriana HOM05D000313 ORTHO05D000065 4.0e-10 69.7 184 25.5
FAN18G2110 Fragaria x ananassa HOM05D005644 ORTHO05D007092 8.9e-10 68.6 102 37.3
TWI09G1314 Tripterygium wilfordii HOM05D002907 ORTHO05D003348 1.2e-09 68.2 115 33.9
TWI34G0823 Tripterygium wilfordii HOM05D018388 ORTHO05D000065 1.2e-09 68.2 72 40.3
BcaB06g27784 Brassica carinata HOM05D000305 ORTHO05D000065 3.4e-09 66.6 161 25.5
DCAR_027158 Daucus carota HOM05D002907 ORTHO05D005554 3.4e-09 66.6 132 28.8
RcHm_v2.0_Chr2g0150581 Rosa chinensis HOM05D007856 ORTHO05D003348 5.8e-09 65.9 196 26.5
TPR.G15228 Trifolium pratense HOM05D000305 ORTHO05D000065 7.5e-09 65.5 74 37.8
BcaC07g36916 Brassica carinata HOM05D000313 ORTHO05D000065 1.3e-08 64.7 139 28.1
BolC8t46904H Brassica oleracea HOM05D000313 ORTHO05D000065 1.3e-08 64.7 139 28.1
COL.COLO4_06619 Corchorus olitorius HOM05D007876 ORTHO05D007430 2.2e-08 63.9 116 34.5
RcHm_v2.0_Chr2g0141711 Rosa chinensis HOM05D006849 ORTHO05D003348 2.2e-08 63.9 181 23.8
FvH4_3g02850 Fragaria vesca HOM05D000096 ORTHO05D000045 2.9e-08 63.5 177 24.9
FAN01G3000 Fragaria x ananassa HOM05D007856 ORTHO05D003348 2.9e-08 63.5 177 24.9
C01p48110 Brassica napus HOM05D000313 ORTHO05D000065 3.7e-08 63.2 139 28.1
Sopen06g010830 Solanum pennellii HOM05D002907 ORTHO05D005554 3.7e-08 63.2 116 27.6
C08p54120 Brassica napus HOM05D000313 ORTHO05D000065 4.9e-08 62.8 139 24.5
DCAR_000518 Daucus carota HOM05D002907 ORTHO05D000065 4.9e-08 62.8 125 28.8
PSO591G0089 Papaver somniferum HOM05D017418 ORTHO05D000065 4.9e-08 62.8 93 29.0
BcaC01g00020 Brassica carinata HOM05D000313 ORTHO05D000065 8.3e-08 62.0 83 32.5
BcaC04g20435 Brassica carinata HOM05D000305 ORTHO05D000065 8.3e-08 62.0 166 24.7
A09p69300 Brassica napus HOM05D000305 ORTHO05D000065 8.3e-08 62.0 166 24.7
BolC8t52920H Brassica oleracea HOM05D000305 ORTHO05D000065 8.3e-08 62.0 166 24.7
TWI53G0762 Tripterygium wilfordii HOM05D002907 ORTHO05D007430 8.3e-08 62.0 271 25.8
DCAR_010742 Daucus carota HOM05D002907 ORTHO05D000065 1.1e-07 61.6 87 33.3
TPR.G6063 Trifolium pratense HOM05D000096 ORTHO05D000065 1.4e-07 61.2 119 29.4
AUR62030467 Chenopodium quinoa HOM05D008127 ORTHO05D010494 1.9e-07 60.8 101 31.7
DCAR_007681 Daucus carota HOM05D002907 ORTHO05D000065 2.4e-07 60.5 87 32.2
HanXRQChr11g0327291 Helianthus annuus HOM05D011053 ORTHO05D010547 2.4e-07 60.5 194 21.1
QL04p076347 Quercus lobata HOM05D002907 ORTHO05D000065 2.4e-07 60.5 142 24.6
QL93p0160_0004 Quercus lobata HOM05D002907 ORTHO05D000065 2.4e-07 60.5 142 24.6
Thecc.04G108900 Theobroma cacao HOM05D000096 ORTHO05D000045 2.4e-07 60.5 153 30.1
COL.COLO4_37009 Corchorus olitorius HOM05D007876 ORTHO05D007430 4.1e-07 59.7 75 36.0
MD02G1249900 Malus domestica HOM05D006849 ORTHO05D003348 5.4e-07 59.3 107 28.0
QL93p0160_0016 Quercus lobata HOM05D002907 ORTHO05D000065 7.1e-07 58.9 142 23.9
TWI53G1742 Tripterygium wilfordii HOM05D002907 ORTHO05D000065 7.1e-07 58.9 284 23.9
BcaC09g50729 Brassica carinata HOM05D000313 ORTHO05D000065 9.2e-07 58.5 81 33.3
Solyc12g038200.3 Solanum lycopersicum HOM05D002700 ORTHO05D003228 1.2e-06 58.2 109 27.5
Thecc.06G012500 Theobroma cacao HOM05D007876 ORTHO05D007430 1.2e-06 58.2 202 26.2
Aqoxy7G01002 Aquilegia oxysepala HOM05D026627 ORTHO05D026736 1.6e-06 57.8 142 24.6
BraA02t05129Z Brassica rapa HOM05D000305 ORTHO05D000065 1.6e-06 57.8 113 25.7
BraA05t20759Z Brassica rapa HOM05D000305 ORTHO05D000065 1.6e-06 57.8 113 25.7
CARHR152820 Cardamine hirsuta HOM05D000305 ORTHO05D000065 1.6e-06 57.8 117 26.5
DCAR_004276 Daucus carota HOM05D002907 ORTHO05D000065 2.1e-06 57.4 171 24.6
QL93p0100_0313 Quercus lobata HOM05D000038 ORTHO05D000612 2.1e-06 57.4 126 24.6
BraA09t38616Z Brassica rapa HOM05D000305 ORTHO05D000065 2.7e-06 57.0 158 25.3
COL.COLO4_34001 Corchorus olitorius HOM05D007876 ORTHO05D007430 2.7e-06 57.0 79 35.4
Lj1A275T36 Lonicera japonica HOM05D002907 ORTHO05D000065 2.7e-06 57.0 131 24.4
QL05p044516 Quercus lobata HOM05D002907 ORTHO05D000065 2.7e-06 57.0 126 25.4
BraA05t19977Z Brassica rapa HOM05D000313 ORTHO05D000065 3.5e-06 56.6 158 24.7
A09p30460 Brassica napus HOM05D000305 ORTHO05D000065 6.0e-06 55.8 164 26.2
DCAR_010369 Daucus carota HOM05D012849 ORTHO05D000065 6.0e-06 55.8 123 26.8
DCAR_022753 Daucus carota HOM05D002907 ORTHO05D000065 6.0e-06 55.8 82 37.8
FvH4_6g30401 Fragaria vesca HOM05D006849 ORTHO05D003348 6.0e-06 55.8 74 31.1
HanXRQChr05g0159821 Helianthus annuus HOM05D011053 ORTHO05D010547 6.0e-06 55.8 206 23.3
Zm00001eb105600 Zea mays HOM05D008312 ORTHO05D010433 6.0e-06 55.8 47 38.3
Glyma.09G126850 Glycine max HOM05D002090 ORTHO05D001923 7.8e-06 55.5 134 27.6
Solyc06g034070.3 Solanum lycopersicum HOM05D002907 ORTHO05D005554 7.8e-06 55.5 81 30.9


User provided reference genes

Program Settings