Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.014G181200 Populus trichocarpa HOM05D005945 ORTHO05D006749 0.0e+00 1927.9 979 100.0
Sabra14G0141200 Salix brachista HOM05D005945 ORTHO05D006749 0.0e+00 1408.3 1034 74.8
Manes.05G161400 Manihot esculenta HOM05D005945 ORTHO05D006749 2.9e-148 530.4 982 39.9
Manes.18G028200 Manihot esculenta HOM05D005945 ORTHO05D006749 1.5e-136 491.5 985 37.9
QL02p007988 Quercus lobata HOM05D005945 ORTHO05D006749 1.5e-123 448.4 1038 35.4
Thecc.08G024700 Theobroma cacao HOM05D005945 ORTHO05D006749 3.2e-115 420.6 979 36.4
Duzib093G2051 Durio zibethinus HOM05D005945 ORTHO05D006749 2.3e-113 414.5 1000 35.0
Cfa018140 Carpinus fangiana HOM05D005945 ORTHO05D006749 1.7e-111 408.3 1025 33.8
COL.COLO4_26338 Corchorus olitorius HOM05D005945 ORTHO05D006749 9.2e-102 375.9 1018 33.5
Cpa.g.sc64.76 Carica papaya HOM05D005945 ORTHO05D006749 1.7e-100 371.7 1018 33.6
Haze_17984 Corylus avellana HOM05D005945 ORTHO05D006749 1.9e-99 368.2 967 32.5
CiPaw.15G076000 Carya illinoinensis HOM05D005945 ORTHO05D006749 4.3e-99 367.1 1071 32.4
Dinv39407 Davidia involucrata HOM05D005945 ORTHO05D006749 4.3e-99 367.1 1009 33.3
Prupe.1G381200 Prunus persica HOM05D005945 ORTHO05D006749 2.5e-91 341.3 996 32.6
Gorai.010G010800 Gossypium raimondii HOM05D005945 ORTHO05D006749 3.3e-91 340.9 988 31.8
Gohir.D06G008100 Gossypium hirsutum HOM05D005945 ORTHO05D006749 1.8e-89 335.1 993 31.7
Gohir.A06G010700 Gossypium hirsutum HOM05D005945 ORTHO05D006749 4.9e-87 327.0 984 31.9
CSS0001698 Camellia sinensis var. sinensis HOM05D005945 ORTHO05D006749 6.6e-84 316.6 1003 30.6
CSS0038834 Camellia sinensis var. sinensis HOM05D005945 ORTHO05D006749 1.1e-83 315.8 1003 30.6
TWI12G1232 Tripterygium wilfordii HOM05D005945 ORTHO05D006749 7.3e-83 313.2 981 30.1
TAR376G0838 Trochodendron aralioides HOM05D005945 ORTHO05D006749 5.2e-81 307.0 983 29.4
Actinidia15315 Actinidia chinensis HOM05D005945 ORTHO05D006749 3.8e-79 300.8 1003 30.6
FvH4_2g39990 Fragaria vesca HOM05D005945 ORTHO05D006749 3.8e-79 300.8 999 29.6
FAN20G0334 Fragaria x ananassa HOM05D005945 ORTHO05D006749 1.6e-77 295.4 998 29.8
RcHm_v2.0_Chr6g0300761 Rosa chinensis HOM05D005945 ORTHO05D006749 2.7e-77 294.7 1006 30.6
FAN15G0837 Fragaria x ananassa HOM05D005945 ORTHO05D006749 6.6e-76 290.0 996 29.4
Nn5g29549 Nelumbo nucifera HOM05D005945 ORTHO05D006749 7.3e-75 286.6 1024 27.2
FAN27G1966 Fragaria x ananassa HOM05D005945 ORTHO05D006749 4.0e-73 280.8 999 28.4
MD15G1030400 Malus domestica HOM05D005945 ORTHO05D006749 9.9e-72 276.2 935 30.3
MD08G1033800 Malus domestica HOM05D005945 ORTHO05D006749 1.7e-71 275.4 992 29.3
CANSAT25G3494 Cannabis sativa HOM05D005945 ORTHO05D006749 4.2e-70 270.8 991 28.3
GSVIVG01009690001 Vitis vinifera HOM05D005945 ORTHO05D006749 6.4e-63 246.9 265 50.6
TAR628G0886 Trochodendron aralioides HOM05D005945 ORTHO05D006749 6.7e-60 236.9 289 48.1
Medtr4g019490 Medicago truncatula HOM05D005945 ORTHO05D006749 1.5e-59 235.7 1096 27.9
TPR.G32532 Trifolium pratense HOM05D005945 ORTHO05D006749 1.9e-59 235.3 1057 27.3
Cc10_g03040 Coffea canephora HOM05D005945 ORTHO05D006749 3.3e-59 234.6 995 28.8
THA.LOC104803244 Tarenaya hassleriana HOM05D005945 ORTHO05D006749 1.3e-58 232.6 987 26.8
arahy.Tifrunner.gnm1.ann1.Q0ZVI3 Arachis hypogaea HOM05D005945 ORTHO05D006749 2.1e-58 231.9 984 26.7
PGSC0003DMG400005162 Solanum tuberosum HOM05D005945 ORTHO05D006749 1.4e-57 229.2 1032 26.6
MELO3C010931.2 Cucumis melo HOM05D005945 ORTHO05D006749 2.0e-56 225.3 980 26.4
arahy.Tifrunner.gnm1.ann1.01TKSZ Arachis hypogaea HOM05D005945 ORTHO05D006749 6.4e-55 220.3 1021 26.3
CsaV3_2G028570 Cucumis sativus L. HOM05D005945 ORTHO05D006749 3.2e-54 218.0 972 26.3
Atru.chr13.502 Acer truncatum HOM05D005945 ORTHO05D006749 4.2e-54 217.6 227 50.7
Psat7g242000 Pisum sativum HOM05D005945 ORTHO05D006749 4.2e-54 217.6 1023 26.7
ClCG08G015230 Citrullus lanatus HOM05D005945 ORTHO05D006749 5.5e-54 217.2 980 26.9
Dinv36067 Davidia involucrata HOM05D005945 ORTHO05D006749 1.6e-53 215.7 229 50.2
Solyc04g080200.4 Solanum lycopersicum HOM05D005945 ORTHO05D006749 3.5e-53 214.5 515 33.8
Eucgr.F01555 Eucalyptus grandis HOM05D005945 ORTHO05D006749 6.0e-53 213.8 470 34.3
Nitab4.5_0003783g0040 Nicotiana tabacum HOM05D005945 ORTHO05D006749 6.0e-53 213.8 507 33.5
ECA247G0868 Erigeron canadensis HOM05D005945 ORTHO05D006749 7.9e-53 213.4 1050 26.5
Nitab4.5_0000110g0520 Nicotiana tabacum HOM05D005945 ORTHO05D006749 1.0e-52 213.0 528 33.3
Lsat_1_v5_gn_1_17620 Lactuca sativa HOM05D005945 ORTHO05D006749 1.1e-51 209.5 259 47.1
Sopen04g033790 Solanum pennellii HOM05D005945 ORTHO05D006749 2.5e-51 208.4 547 32.9
Phvul.010G012000 Phaseolus vulgaris HOM05D005945 ORTHO05D006749 1.3e-50 206.1 250 46.4
Peaxi162Scf00690g00118 Petunia axillaris HOM05D005945 ORTHO05D006749 6.2e-50 203.8 279 43.0
Rhsim06G0034700 Rhododendron simsii HOM05D005945 ORTHO05D006749 4.0e-49 201.1 1016 25.1
Oeu056183.1 Olea europaea HOM05D005945 ORTHO05D006749 6.9e-49 200.3 512 32.8
Hund26580 Selenicereus undatus HOM05D005945 ORTHO05D006749 1.5e-48 199.1 1001 25.8
HanXRQChr04g0105591 Helianthus annuus HOM05D005945 ORTHO05D006749 2.6e-48 198.4 264 43.9
PGR031G1506 Punica granatum HOM05D005945 ORTHO05D006749 2.6e-48 198.4 331 40.5
TAR628G0416 Trochodendron aralioides HOM05D005945 ORTHO05D006749 5.8e-48 197.2 184 56.5
Migut.C00710 Erythranthe guttata HOM05D005945 ORTHO05D006749 3.8e-47 194.5 505 31.9
Lj4A42T73 Lonicera japonica HOM05D005945 ORTHO05D006749 3.8e-47 194.5 182 54.4
Lj3g0003314 Lotus japonicus HOM05D005945 ORTHO05D006749 6.5e-47 193.7 292 43.2
Sc15g0006890 Simmondsia chinensis HOM05D005945 ORTHO05D006749 6.5e-47 193.7 989 26.2
Oeu036192.1 Olea europaea HOM05D005945 ORTHO05D006749 8.4e-47 193.4 1022 25.8
Ca_03064_v3 Cicer arietinum L. HOM05D005945 ORTHO05D006749 4.2e-46 191.0 376 36.7
MSTRG.25161 Avicennia marina HOM05D005945 ORTHO05D006749 5.5e-46 190.7 246 44.7
PSO675G9049 Papaver somniferum HOM05D005945 ORTHO05D006749 2.1e-45 188.7 366 36.1
HanXRQChr04g0105581 Helianthus annuus HOM05D005945 ORTHO05D006749 4.6e-45 187.6 265 41.5
PSO541G4169 Papaver somniferum HOM05D005945 ORTHO05D006749 1.0e-44 186.4 366 35.2
VMungo0331G0095 Vigna mungo HOM05D005945 ORTHO05D006749 3.9e-44 184.5 251 45.0
Glyma.03G071500 Glycine max HOM05D005945 ORTHO05D006749 6.7e-44 183.7 979 26.0
Gohir.D02G094500 Gossypium hirsutum HOM05D005945 ORTHO05D006749 1.1e-43 183.0 448 35.3
AT3G56870 Arabidopsis thaliana HOM05D005945 ORTHO05D006749 4.3e-43 181.0 263 39.9
A09p49740 Brassica napus HOM05D005945 ORTHO05D006749 5.7e-43 180.6 978 26.2
BraA09t40427Z Brassica rapa HOM05D005945 ORTHO05D006749 5.7e-43 180.6 978 26.2
BcaC07g39998 Brassica carinata HOM05D005945 ORTHO05D006749 7.4e-43 180.3 275 39.6
C08p32110 Brassica napus HOM05D005945 ORTHO05D006749 7.4e-43 180.3 275 39.6
BolC8t50829H Brassica oleracea HOM05D005945 ORTHO05D006749 7.4e-43 180.3 275 39.6
Carub.0005s2360 Capsella rubella HOM05D005945 ORTHO05D006749 1.3e-42 179.5 263 39.5
MBI16_g17464_MAGBIO Magnolia biondii HOM05D005945 ORTHO05D006749 4.8e-42 177.6 1032 25.6
Potri.002G262601 Populus trichocarpa HOM05D005945 ORTHO05D006749 4.8e-42 177.6 116 75.9
Glyma.01G104600 Glycine max HOM05D005945 ORTHO05D006749 6.3e-42 177.2 282 41.8
DCAR_008766 Daucus carota HOM05D005945 ORTHO05D006749 8.2e-42 176.8 304 39.1
SGA_v2.0_scaffold326G48709 Striga asiatica HOM05D005945 ORTHO05D006749 1.1e-41 176.4 649 29.3
Sed0009733 Sechium edule HOM05D005945 ORTHO05D006749 3.1e-41 174.9 972 25.7
Gorai.005G107400 Gossypium raimondii HOM05D005945 ORTHO05D006749 4.1e-41 174.5 450 34.7
Lj2g0002553 Lotus japonicus HOM05D005945 ORTHO05D006749 1.2e-40 172.9 292 41.4
Sp5g05720 Schrenkiella parvula HOM05D005945 ORTHO05D006749 2.0e-40 172.2 1007 26.7
AL5G38260 Arabidopsis lyrata HOM05D005945 ORTHO05D006749 5.9e-40 170.6 526 28.9
Thhalv10005811m.g Eutrema salsugineum HOM05D005945 ORTHO05D006749 5.9e-40 170.6 340 35.9
BcaC07g40112 Brassica carinata HOM05D005945 ORTHO05D006749 1.0e-39 169.9 249 41.4
EL10Ac1g01817 Beta vulgaris HOM05D005945 ORTHO05D006749 6.5e-39 167.2 1010 25.0
Sed0010063 Sechium edule HOM05D005945 ORTHO05D006749 4.2e-38 164.5 975 25.3
Aa31LG10G11720 Aethionema arabicum HOM05D005945 ORTHO05D006749 4.6e-37 161.0 351 33.6
Aqoxy6G01057 Aquilegia oxysepala HOM05D005945 ORTHO05D006749 7.9e-37 160.2 250 39.6
Ah.11g043130 Amaranthus hybridus HOM05D005945 ORTHO05D006749 5.1e-36 157.5 1034 24.3
Atru.chr13.504 Acer truncatum HOM05D005945 ORTHO05D006749 1.9e-35 155.6 443 31.8
CARHR167020 Cardamine hirsuta HOM05D005945 ORTHO05D006749 9.7e-35 153.3 272 37.9
HPP92_021270 Vanilla planifolia HOM05D005945 ORTHO05D006749 9.7e-35 153.3 257 38.9
Lalb_Chr03g0042671 Lupinus albus HOM05D005945 ORTHO05D006749 1.2e-32 146.4 321 35.8
vmacro21631 Vaccinium macrocarpon HOM05D005945 ORTHO05D006749 1.3e-31 142.9 136 50.7
AUR62038825 Chenopodium quinoa HOM05D005945 ORTHO05D006749 1.7e-31 142.5 987 24.2
Aqoxy4G01586 Aquilegia oxysepala HOM05D005945 ORTHO05D006749 1.1e-30 139.8 910 26.0
Zm00001eb404680 Zea mays HOM05D005945 ORTHO05D006749 1.1e-30 139.8 255 37.3
Lalb_Chr19g0125071 Lupinus albus HOM05D005945 ORTHO05D006749 7.2e-30 137.1 176 42.6
Os03g0594700 Oryza sativa ssp. japonica HOM05D005945 ORTHO05D006749 2.7e-29 135.2 258 36.8
Sabra02G0199400 Salix brachista HOM05D005945 ORTHO05D006749 3.9e-28 131.3 91 72.5
ATR0618G067 Amborella trichopoda HOM05D005945 ORTHO05D006749 5.1e-28 131.0 246 36.2
Zm00001eb021170 Zea mays HOM05D005945 ORTHO05D006749 3.3e-27 128.3 292 35.3
AUR62043686 Chenopodium quinoa HOM05D005945 ORTHO05D006749 4.4e-27 127.9 1022 22.7
Actinidia22556 Actinidia chinensis HOM05D005945 ORTHO05D006749 6.3e-26 124.0 111 55.0
Aqoxy4G01559 Aquilegia oxysepala HOM05D005945 ORTHO05D006749 3.1e-25 121.7 889 25.2
vmacro21630 Vaccinium macrocarpon HOM05D005945 ORTHO05D006749 3.1e-25 121.7 800 26.0
SEGI_34412 Sequoiadendron giganteum HOM05D057448 ORTHO05D006749 4.1e-25 121.3 152 42.8
Ah.05g167400 Amaranthus hybridus HOM05D005945 ORTHO05D006749 9.1e-25 120.2 965 23.4
Sc18g0006320 Simmondsia chinensis HOM05D005945 ORTHO05D006749 1.3e-18 99.8 245 31.8
TAR381G0602 Trochodendron aralioides HOM05D005945 ORTHO05D006749 1.2e-16 93.2 155 40.0
HPP92_021280 Vanilla planifolia HOM05D050438 ORTHO05D006749 8.5e-15 87.0 257 30.7
AagrBONN_evm.TU.Sc2ySwM_344.3266 Anthoceros agrestis HOM05D005945 ORTHO05D006749 1.8e-12 79.3 130 38.5
CDE02G0146 Ceratophyllum demersum HOM05D060868 ORTHO05D006749 8.8e-12 77.0 177 33.3
Mapoly0005s0138 Marchantia polymorpha HOM05D036654 ORTHO05D006749 2.8e-10 72.0 168 31.5
CDE04G3738 Ceratophyllum demersum HOM05D060868 ORTHO05D006749 4.8e-10 71.2 75 45.3
Gohir.A03G078400 Gossypium hirsutum HOM05D005945 ORTHO05D006749 1.6e-08 66.2 318 27.0
SEGI_18222 Sequoiadendron giganteum HOM05D007138 ORTHO05D009148 2.0e-08 65.9 153 30.7
THA.LOC104803300 Tarenaya hassleriana HOM05D005945 ORTHO05D006749 2.7e-08 65.5 201 28.4
Lalb_Chr19g0125061 Lupinus albus HOM05D005945 ORTHO05D006749 2.2e-07 62.4 266 25.9
CBR_g25863 Chara braunii HOM05D005945 ORTHO05D006749 1.1e-06 60.1 156 29.5


User provided reference genes

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