Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.014G180700 Populus trichocarpa HOM05D006576 ORTHO05D008644 0.0e+00 1362.8 653 100.0
Sabra14G0140900 Salix brachista HOM05D006576 ORTHO05D008644 0.0e+00 1285.8 655 94.4
Manes.11G048300 Manihot esculenta HOM05D006576 ORTHO05D008644 0.0e+00 1161.7 654 84.1
Glyma.06G033200 Glycine max HOM05D006576 ORTHO05D008644 0.0e+00 1129.4 655 80.5
TAR381G1568 Trochodendron aralioides HOM05D006576 ORTHO05D008644 0.0e+00 1127.5 655 80.2
Lalb_Chr11g0062371 Lupinus albus HOM05D006576 ORTHO05D008644 0.0e+00 1127.1 655 80.5
QL02p007885 Quercus lobata HOM05D006576 ORTHO05D008644 0.0e+00 1127.1 693 78.4
MD15G1029800 Malus domestica HOM05D006576 ORTHO05D008644 0.0e+00 1126.3 656 80.5
RcHm_v2.0_Chr6g0300731 Rosa chinensis HOM05D006576 ORTHO05D008644 0.0e+00 1123.2 654 80.1
MD08G1033200 Malus domestica HOM05D006576 ORTHO05D008644 0.0e+00 1122.1 656 80.5
Thecc.08G024000 Theobroma cacao HOM05D006576 ORTHO05D008644 0.0e+00 1121.3 646 81.7
VMungo1309G2241 Vigna mungo HOM05D006576 ORTHO05D008644 0.0e+00 1118.2 649 78.9
Ciclev10003149m.g Citrus clementina HOM05D006576 ORTHO05D008644 0.0e+00 1117.4 653 81.0
Lj1g0002309 Lotus japonicus HOM05D006576 ORTHO05D008644 0.0e+00 1115.5 655 79.1
Gorai.002G129100 Gossypium raimondii HOM05D006576 ORTHO05D008644 0.0e+00 1114.0 654 80.4
Phvul.009G056900 Phaseolus vulgaris HOM05D006576 ORTHO05D008644 0.0e+00 1113.6 649 79.0
TWI36G0276 Tripterygium wilfordii HOM05D006576 ORTHO05D008644 0.0e+00 1110.5 655 80.6
FvH4_2g40020 Fragaria vesca HOM05D006576 ORTHO05D008644 0.0e+00 1110.1 654 79.2
Gohir.D01G105100 Gossypium hirsutum HOM05D006576 ORTHO05D008644 0.0e+00 1108.6 644 80.7
Gohir.A01G116700 Gossypium hirsutum HOM05D006576 ORTHO05D008644 0.0e+00 1107.0 654 80.0
Cpa.g.sc64.67 Carica papaya HOM05D006576 ORTHO05D008644 0.0e+00 1106.7 643 79.9
arahy.Tifrunner.gnm1.ann1.N2LUF1 Arachis hypogaea HOM05D006576 ORTHO05D008644 0.0e+00 1105.1 655 78.2
arahy.Tifrunner.gnm1.ann1.G51JN1 Arachis hypogaea HOM05D006576 ORTHO05D008644 0.0e+00 1104.0 655 78.3
CsaV3_3G044990 Cucumis sativus L. HOM05D006576 ORTHO05D008644 0.0e+00 1104.0 654 78.9
MELO3C003867.2 Cucumis melo HOM05D006576 ORTHO05D008644 0.0e+00 1099.0 654 78.4
Prupe.1G381700 Prunus persica HOM05D006576 ORTHO05D008644 0.0e+00 1099.0 656 79.0
Hma1.2p1_0203F.1_g086540 Hydrangea macrophylla HOM05D006576 ORTHO05D008644 0.0e+00 1097.8 648 78.4
TWI12G0537 Tripterygium wilfordii HOM05D006576 ORTHO05D008644 0.0e+00 1097.0 655 78.6
Sed0024937 Sechium edule HOM05D006576 ORTHO05D008644 0.0e+00 1095.9 654 78.1
CiPaw.16G055000 Carya illinoinensis HOM05D006576 ORTHO05D008644 0.0e+00 1094.7 655 79.2
Medtr3g111730 Medicago truncatula HOM05D006576 ORTHO05D008644 0.0e+00 1092.4 656 77.4
FAN27G3021 Fragaria x ananassa HOM05D006576 ORTHO05D008644 0.0e+00 1092.0 654 78.4
Atru.chr13.516 Acer truncatum HOM05D006576 ORTHO05D008644 0.0e+00 1091.6 653 79.3
ClCG05G019150 Citrullus lanatus HOM05D006576 ORTHO05D008644 0.0e+00 1091.6 647 79.0
Atru.BG.235.p Acer truncatum HOM05D006576 ORTHO05D008644 0.0e+00 1091.3 638 81.7
Ca_15522_v3 Cicer arietinum L. HOM05D006576 ORTHO05D008644 0.0e+00 1085.1 645 79.1
COL.COLO4_26345 Corchorus olitorius HOM05D006576 ORTHO05D008644 0.0e+00 1082.4 644 79.5
Cc10_g03100 Coffea canephora HOM05D006576 ORTHO05D008644 0.0e+00 1080.9 655 76.0
Peaxi162Scf00690g00125 Petunia axillaris HOM05D006576 ORTHO05D008644 0.0e+00 1075.5 656 76.8
GSVIVG01009681001 Vitis vinifera HOM05D006576 ORTHO05D008644 4.5e-312 1074.7 642 79.0
PGR083G0445 Punica granatum HOM05D006576 ORTHO05D008644 8.9e-312 1073.2 655 76.8
Lj4A42T76 Lonicera japonica HOM05D006576 ORTHO05D008644 8.9e-312 1072.8 662 76.3
HanXRQChr04g0105541 Helianthus annuus HOM05D006576 ORTHO05D008644 4.0e-311 1070.8 653 76.3
Nitab4.5_0012039g0010 Nicotiana tabacum HOM05D006576 ORTHO05D008644 4.4e-310 1067.4 651 76.5
Nn1g05071 Nelumbo nucifera HOM05D006576 ORTHO05D008644 7.5e-310 1066.6 656 75.9
Migut.C00705 Erythranthe guttata HOM05D006576 ORTHO05D008644 1.7e-309 1065.4 654 74.8
Rhsim06G0035200 Rhododendron simsii HOM05D006576 ORTHO05D008644 2.9e-309 1064.7 684 73.8
CSS0022363 Camellia sinensis var. sinensis HOM05D006576 ORTHO05D008644 4.9e-309 1063.9 729 70.6
Psat0s4808g0040 Pisum sativum HOM05D006576 ORTHO05D008644 4.9e-309 1063.9 673 74.3
MSTRG.25158 Avicennia marina HOM05D006576 ORTHO05D008644 6.4e-309 1063.5 654 75.7
EL10Ac1g01831 Beta vulgaris HOM05D006576 ORTHO05D008644 6.4e-309 1063.5 648 75.6
Solyc04g080140.4 Solanum lycopersicum HOM05D006576 ORTHO05D008644 1.2e-307 1059.3 656 75.2
Sopen04g033720 Solanum pennellii HOM05D006576 ORTHO05D008644 1.3e-306 1055.8 646 75.7
Haze_17991 Corylus avellana HOM05D006576 ORTHO05D008644 8.6e-306 1053.1 809 65.5
THA.LOC104822840 Tarenaya hassleriana HOM05D006576 ORTHO05D008644 1.1e-305 1052.7 654 75.2
DCAR_019521 Daucus carota HOM05D006576 ORTHO05D008644 1.9e-305 1052.0 653 76.1
Nitab4.5_0000110g0470 Nicotiana tabacum HOM05D006576 ORTHO05D008644 9.5e-305 1049.7 654 75.2
CAN.G1126.39 Capsicum annuum HOM05D006576 ORTHO05D008644 2.1e-304 1048.5 642 75.1
Glyma.04G033200 Glycine max HOM05D006576 ORTHO05D008644 6.8e-303 1043.5 595 80.5
Lsat_1_v5_gn_1_17900 Lactuca sativa HOM05D006576 ORTHO05D008644 1.5e-302 1042.3 643 74.7
FAN20G0603 Fragaria x ananassa HOM05D006576 ORTHO05D008644 4.9e-301 1037.3 654 75.2
Hund26593 Selenicereus undatus HOM05D006576 ORTHO05D008644 7.1e-300 1033.5 645 73.8
Ah.05g167470 Amaranthus hybridus HOM05D006576 ORTHO05D008644 9.2e-300 1033.1 654 73.7
Eucgr.F01554 Eucalyptus grandis HOM05D006576 ORTHO05D008644 9.2e-300 1033.1 660 74.5
Aqoxy6G01046 Aquilegia oxysepala HOM05D006576 ORTHO05D008644 4.6e-299 1030.8 656 73.3
SalBow7G4023 Salvia bowleyana HOM05D006576 ORTHO05D008644 6.6e-298 1026.9 672 71.9
AUR62033848 Chenopodium quinoa HOM05D006576 ORTHO05D008644 1.5e-297 1025.8 652 73.5
Sp1g33910 Schrenkiella parvula HOM05D006576 ORTHO05D008644 1.9e-297 1025.4 654 73.4
SGA_v2.0_scaffold24G10239 Striga asiatica HOM05D006576 ORTHO05D008644 1.9e-297 1025.4 651 73.7
Actinidia15312 Actinidia chinensis HOM05D006576 ORTHO05D008644 9.5e-297 1023.1 617 77.5
BcaB04g17577 Brassica carinata HOM05D006576 ORTHO05D008644 4.0e-295 1017.7 653 72.7
CSS0029857 Camellia sinensis var. sinensis HOM05D006576 ORTHO05D008644 4.0e-295 1017.7 602 79.6
ECA247G3618 Erigeron canadensis HOM05D006576 ORTHO05D008644 8.9e-295 1016.5 616 76.6
Thhalv10011304m.g Eutrema salsugineum HOM05D006576 ORTHO05D008644 1.5e-294 1015.8 653 72.6
A08p06220 Brassica napus HOM05D006576 ORTHO05D008644 7.6e-294 1013.4 640 73.6
BraA08t32625Z Brassica rapa HOM05D006576 ORTHO05D008644 2.2e-293 1011.9 652 72.4
Carub.0001s3555 Capsella rubella HOM05D006576 ORTHO05D008644 1.1e-292 1009.6 640 73.3
AT1G45150 Arabidopsis thaliana HOM05D006576 ORTHO05D008644 1.0e-290 1003.0 653 71.7
BcaC07g37274 Brassica carinata HOM05D006576 ORTHO05D008644 1.7e-290 1002.3 640 73.3
C08p07030 Brassica napus HOM05D006576 ORTHO05D008644 1.7e-290 1002.3 640 73.3
BolC8t47545H Brassica oleracea HOM05D006576 ORTHO05D008644 1.7e-290 1002.3 640 73.3
PSO675G1390 Papaver somniferum HOM05D006576 ORTHO05D008644 3.9e-290 1001.1 655 71.6
vmacro21626 Vaccinium macrocarpon HOM05D006576 ORTHO05D008644 8.7e-290 1000.0 796 62.6
ATR0733G192 Amborella trichopoda HOM05D006576 ORTHO05D008644 7.3e-289 996.9 649 72.1
CANSAT25G2025 Cannabis sativa HOM05D006576 ORTHO05D008644 6.9e-287 990.3 575 80.5
Duzib093G2111 Durio zibethinus HOM05D006576 ORTHO05D008644 2.1e-280 968.8 655 71.8
PSO541G0394 Papaver somniferum HOM05D006576 ORTHO05D008644 1.1e-279 966.5 655 70.1
Os07g0581300 Oryza sativa ssp. japonica HOM05D006576 ORTHO05D008644 7.6e-278 960.3 647 68.6
FAN15G1632 Fragaria x ananassa HOM05D006576 ORTHO05D008644 1.3e-269 932.9 644 70.8
AL1G52790 Arabidopsis lyrata HOM05D006576 ORTHO05D008644 3.3e-265 918.3 558 74.6
Zm00001eb107720 Zea mays HOM05D006576 ORTHO05D008644 3.2e-260 901.7 595 69.4
Sc02g0006340 Simmondsia chinensis HOM05D006576 ORTHO05D008644 1.2e-251 873.2 563 73.5
CDE04G1970 Ceratophyllum demersum HOM05D006576 ORTHO05D008644 4.3e-249 864.8 575 69.2
Mapoly0015s0075 Marchantia polymorpha HOM05D006576 ORTHO05D008644 3.4e-246 855.1 644 63.2
Pp3c21_15170 Physcomitrium patens HOM05D006576 ORTHO05D008644 6.3e-240 834.3 641 61.5
SMO367G0262 Selaginella moellendorffii HOM05D006576 ORTHO05D008644 8.2e-232 807.4 643 59.9
Hma1.2p1_0203F.1_g086550 Hydrangea macrophylla HOM05D006576 ORTHO05D008644 2.3e-205 719.5 517 68.5
CARHR036240 Cardamine hirsuta HOM05D006576 ORTHO05D008644 1.7e-189 666.8 363 81.0
Dinv36060 Davidia involucrata HOM05D006576 ORTHO05D008644 7.8e-174 614.8 379 79.7
Oeu005363.1 Olea europaea HOM05D006576 ORTHO05D008644 4.5e-161 572.4 381 72.2
unitig_578.g16727 Utricularia gibba HOM05D006576 ORTHO05D008644 1.0e-157 561.2 562 52.1
AUR62041679 Chenopodium quinoa HOM05D006576 ORTHO05D008644 6.7e-157 558.5 373 72.1
CBR_g55233 Chara braunii HOM05D006576 ORTHO05D008644 7.4e-140 501.9 533 48.8
AUR62041680 Chenopodium quinoa HOM05D006576 ORTHO05D008644 3.9e-117 426.4 241 76.3
CBR_g6514 Chara braunii HOM05D006576 ORTHO05D008644 1.5e-87 328.2 739 32.1
SHI46795 Sapria himalayana HOM05D006576 ORTHO05D008644 2.9e-75 287.3 244 62.7
SEGI_38008 Sequoiadendron giganteum HOM05D006576 ORTHO05D008644 3.7e-75 287.0 152 82.2
Lsat_1_v5_gn_3_960 Lactuca sativa HOM05D006576 ORTHO05D008644 3.9e-56 223.8 200 55.0
Nn2g14734 Nelumbo nucifera HOM05D006576 ORTHO05D008644 5.0e-27 127.1 72 81.9
Nn7g38200 Nelumbo nucifera HOM05D006576 ORTHO05D008644 6.5e-27 126.7 71 83.1
Atru.chr11.1906 Acer truncatum HOM05D006576 ORTHO05D008644 1.8e-24 118.6 77 67.5
MBI18_g06878_MAGBIO Magnolia biondii HOM05D006576 ORTHO05D008644 2.4e-21 108.2 70 67.1
MBI18_g09633_MAGBIO Magnolia biondii HOM05D006576 ORTHO05D008644 1.2e-20 105.9 71 63.4
MD05G1053300 Malus domestica HOM05D006576 ORTHO05D248938 2.6e-20 104.8 64 71.9
MBI13_g29621_MAGBIO Magnolia biondii HOM05D006576 ORTHO05D008644 3.8e-19 100.9 70 62.9
Zm00001eb352490 Zea mays HOM05D006576 ORTHO05D008499 2.5e-18 98.2 95 60.0
Zm00001eb171910 Zea mays HOM05D000538 ORTHO05D003297 1.5e-15 89.0 102 48.0
Zm00001eb326440 Zea mays HOM05D006576 ORTHO05D028753 2.5e-15 88.2 67 68.7
Zm00001eb361570 Zea mays HOM05D006576 ORTHO05D028753 2.5e-15 88.2 67 68.7
Zm00001eb377960 Zea mays HOM05D006576 ORTHO05D028753 2.5e-15 88.2 67 68.7
CBR_g55378 Chara braunii HOM05D006576 ORTHO05D028753 7.4e-15 86.7 86 57.0
AL4G26800 Arabidopsis lyrata HOM05D006576 ORTHO05D008644 1.1e-10 72.8 97 45.4
MBI18_g23781_MAGBIO Magnolia biondii HOM05D006576 ORTHO05D008644 4.2e-10 70.9 34 85.3
Zm00001eb147180 Zea mays HOM05D014217 ORTHO05D000496 1.1e-07 62.8 67 46.3
Zm00001eb413530 Zea mays HOM05D014217 ORTHO05D000496 9.7e-07 59.7 64 45.3


User provided reference genes

Program Settings