Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.014G169500 Populus trichocarpa HOM05D005570 ORTHO05D007368 8.4e-94 347.1 180 100.0
Sabra14G0129400 Salix brachista HOM05D005570 ORTHO05D007368 1.7e-86 322.8 180 93.3
Manes.13G060500 Manihot esculenta HOM05D005570 ORTHO05D007368 9.7e-66 253.8 173 79.2
Cfa018716 Carpinus fangiana HOM05D005570 ORTHO05D007368 3.2e-61 238.8 172 70.9
CSS0001120 Camellia sinensis var. sinensis HOM05D005570 ORTHO05D007368 1.6e-60 236.5 170 73.5
Haze_07109 Corylus avellana HOM05D005570 ORTHO05D007368 6.1e-60 234.6 172 69.8
Atru.chr6.3424 Acer truncatum HOM05D005570 ORTHO05D007368 1.4e-59 233.4 161 77.0
Ciclev10016955m.g Citrus clementina HOM05D005570 ORTHO05D007368 1.4e-59 233.4 173 71.7
Lj9C217G3 Lonicera japonica HOM05D005570 ORTHO05D007368 3.0e-59 232.3 170 71.8
Peaxi162Scf00612g00133 Petunia axillaris HOM05D005570 ORTHO05D007368 3.0e-59 232.3 162 74.7
Sc21g0000460 Simmondsia chinensis HOM05D005570 ORTHO05D007368 8.8e-59 230.7 162 73.5
Prupe.5G143000 Prunus persica HOM05D005570 ORTHO05D007368 4.4e-58 228.4 167 70.7
TWI18G0239 Tripterygium wilfordii HOM05D005570 ORTHO05D007368 4.4e-58 228.4 169 69.8
CSS0020937 Camellia sinensis var. sinensis HOM05D005570 ORTHO05D007368 5.7e-58 228.0 170 72.4
Solyc07g042710.3 Solanum lycopersicum HOM05D005570 ORTHO05D007368 5.7e-58 228.0 162 73.5
Sopen07g023810 Solanum pennellii HOM05D005570 ORTHO05D007368 5.7e-58 228.0 162 73.5
ClCG06G018310 Citrullus lanatus HOM05D005570 ORTHO05D007368 7.4e-58 227.6 172 68.6
Hma1.2p1_0599F.1_g187020 Hydrangea macrophylla HOM05D005570 ORTHO05D007368 1.7e-57 226.5 162 74.7
QL10p000758 Quercus lobata HOM05D005570 ORTHO05D007368 2.2e-57 226.1 161 72.7
CiPaw.01G284700 Carya illinoinensis HOM05D005570 ORTHO05D007368 2.8e-57 225.7 179 67.0
PGR044G2338 Punica granatum HOM05D005570 ORTHO05D007368 2.8e-57 225.7 172 69.2
CsaV3_1G000130 Cucumis sativus L. HOM05D005570 ORTHO05D007368 3.7e-57 225.3 172 68.0
FvH4_5g09330 Fragaria vesca HOM05D005570 ORTHO05D007368 3.7e-57 225.3 171 69.0
FAN18G0853 Fragaria x ananassa HOM05D005570 ORTHO05D007368 3.7e-57 225.3 171 69.0
PGR031G1532 Punica granatum HOM05D005570 ORTHO05D007368 6.3e-57 224.6 169 70.4
DCAR_008745 Daucus carota HOM05D005570 ORTHO05D007368 1.4e-56 223.4 167 70.1
FAN13G2066 Fragaria x ananassa HOM05D005570 ORTHO05D007368 1.4e-56 223.4 171 68.4
Duzib213G1053 Durio zibethinus HOM05D005570 ORTHO05D007368 1.8e-56 223.0 160 72.5
MD14G1148400 Malus domestica HOM05D005570 ORTHO05D007368 2.4e-56 222.6 162 71.0
FAN04G1041 Fragaria x ananassa HOM05D005570 ORTHO05D007368 3.1e-56 222.2 171 67.8
Thecc.07G134300 Theobroma cacao HOM05D005570 ORTHO05D007368 3.1e-56 222.2 160 71.9
RcHm_v2.0_Chr7g0188821 Rosa chinensis HOM05D005570 ORTHO05D007368 4.1e-56 221.9 169 67.5
Sed0027705 Sechium edule HOM05D005570 ORTHO05D007368 4.1e-56 221.9 172 67.4
COL.COLO4_17467 Corchorus olitorius HOM05D005570 ORTHO05D007368 5.3e-56 221.5 159 73.0
HanXRQChr03g0075001 Helianthus annuus HOM05D005570 ORTHO05D007368 1.2e-55 220.3 162 70.4
MD06G1132000 Malus domestica HOM05D005570 ORTHO05D007368 1.2e-55 220.3 162 70.4
Rhsim04G0030600 Rhododendron simsii HOM05D005570 ORTHO05D007368 1.2e-55 220.3 159 74.2
AUR62019308 Chenopodium quinoa HOM05D005570 ORTHO05D007368 1.5e-55 219.9 161 73.3
BcaB06g26780 Brassica carinata HOM05D005570 ORTHO05D007368 2.0e-55 219.5 162 70.4
MBI14_g24038_MAGBIO Magnolia biondii HOM05D005570 ORTHO05D007368 2.0e-55 219.5 171 67.8
AUR62000128 Chenopodium quinoa HOM05D005570 ORTHO05D007368 4.5e-55 218.4 162 72.2
Nitab4.5_0005354g0010 Nicotiana tabacum HOM05D005570 ORTHO05D007368 4.5e-55 218.4 173 66.5
A07p06720 Brassica napus HOM05D005570 ORTHO05D007368 7.7e-55 217.6 160 70.6
BraA07t28466Z Brassica rapa HOM05D005570 ORTHO05D007368 7.7e-55 217.6 160 70.6
Cc02_g29600 Coffea canephora HOM05D005570 ORTHO05D007368 7.7e-55 217.6 170 66.5
Aqoxy2G01347 Aquilegia oxysepala HOM05D005570 ORTHO05D007368 1.0e-54 217.2 162 68.5
Aqoxy7G00316 Aquilegia oxysepala HOM05D005570 ORTHO05D007368 1.3e-54 216.9 169 65.7
Nitab4.5_0005376g0020 Nicotiana tabacum HOM05D005570 ORTHO05D007368 2.2e-54 216.1 173 66.5
Carub.0003s2602 Capsella rubella HOM05D005570 ORTHO05D007368 2.9e-54 215.7 162 70.4
Gohir.D01G037900 Gossypium hirsutum HOM05D005570 ORTHO05D007368 2.9e-54 215.7 159 70.4
Gorai.002G046300 Gossypium raimondii HOM05D005570 ORTHO05D007368 2.9e-54 215.7 159 70.4
C07p10300 Brassica napus HOM05D005570 ORTHO05D007368 5.0e-54 214.9 160 70.0
Eucgr.K01395 Eucalyptus grandis HOM05D005570 ORTHO05D007368 5.0e-54 214.9 168 66.7
TAR374G1095 Trochodendron aralioides HOM05D005570 ORTHO05D007368 5.0e-54 214.9 169 66.9
BcaC06g35864 Brassica carinata HOM05D005570 ORTHO05D007368 6.5e-54 214.5 160 70.0
BolC7t41480H Brassica oleracea HOM05D005570 ORTHO05D007368 6.5e-54 214.5 160 70.0
GSVIVG01018573001 Vitis vinifera HOM05D005570 ORTHO05D007368 8.5e-54 214.2 172 65.1
Aa31LG7G6130 Aethionema arabicum HOM05D005570 ORTHO05D007368 1.4e-53 213.4 158 69.6
Lsat_1_v5_gn_9_102501 Lactuca sativa HOM05D005570 ORTHO05D007368 1.4e-53 213.4 172 65.7
Migut.H01280 Erythranthe guttata HOM05D005570 ORTHO05D007368 1.9e-53 213.0 172 63.4
Gohir.A01G047200 Gossypium hirsutum HOM05D005570 ORTHO05D007368 1.9e-53 213.0 159 69.8
Sp3g23170 Schrenkiella parvula HOM05D005570 ORTHO05D007368 2.5e-53 212.6 162 69.1
AT2G04340 Arabidopsis thaliana HOM05D005570 ORTHO05D007368 4.2e-53 211.8 162 69.1
Thhalv10002687m.g Eutrema salsugineum HOM05D005570 ORTHO05D007368 1.2e-52 210.3 162 68.5
MSTRG.12255 Avicennia marina HOM05D005570 ORTHO05D007368 1.6e-52 209.9 157 68.2
CARHR102200 Cardamine hirsuta HOM05D005570 ORTHO05D007368 2.1e-52 209.5 162 67.9
AL3G42010 Arabidopsis lyrata HOM05D005570 ORTHO05D007368 7.9e-52 207.6 162 67.9
Nn4g22113 Nelumbo nucifera HOM05D005570 ORTHO05D007368 1.4e-51 206.8 154 68.2
ECA240G0244 Erigeron canadensis HOM05D005570 ORTHO05D007368 2.3e-51 206.1 141 73.8
arahy.Tifrunner.gnm1.ann1.66C0B7 Arachis hypogaea HOM05D005570 ORTHO05D007368 5.2e-51 204.9 162 64.2
arahy.Tifrunner.gnm1.ann1.TWVE3E Arachis hypogaea HOM05D005570 ORTHO05D007368 5.2e-51 204.9 162 64.2
CSS0039609 Camellia sinensis var. sinensis HOM05D005570 ORTHO05D007368 8.8e-51 204.1 170 66.5
Glyma.07G223300 Glycine max HOM05D005570 ORTHO05D007368 8.8e-51 204.1 162 67.3
Actinidia07853 Actinidia chinensis HOM05D005570 ORTHO05D007368 1.1e-50 203.8 166 63.9
Lj1g0005707 Lotus japonicus HOM05D005570 ORTHO05D007368 1.5e-50 203.4 162 64.8
arahy.Tifrunner.gnm1.ann1.18Q938 Arachis hypogaea HOM05D005570 ORTHO05D007368 2.6e-50 202.6 154 66.2
VMungo0251G2804 Vigna mungo HOM05D005570 ORTHO05D007368 2.6e-50 202.6 162 66.7
Phvul.002G100000 Phaseolus vulgaris HOM05D005570 ORTHO05D007368 7.4e-50 201.1 162 66.0
arahy.Tifrunner.gnm1.ann1.CPK3HX Arachis hypogaea HOM05D005570 ORTHO05D007368 2.2e-49 199.5 154 66.9
PSO421G0324 Papaver somniferum HOM05D005570 ORTHO05D007368 2.2e-49 199.5 164 62.2
MELO3C026167.2 Cucumis melo HOM05D005570 ORTHO05D007368 4.8e-49 198.4 236 49.6
CANSAT01G1761 Cannabis sativa HOM05D005570 ORTHO05D007368 6.3e-49 198.0 162 66.0
PSO063G1837 Papaver somniferum HOM05D005570 ORTHO05D007368 6.3e-49 198.0 163 63.2
PSO063G6961 Papaver somniferum HOM05D005570 ORTHO05D007368 1.1e-48 197.2 163 62.0
Lalb_Chr09g0328771 Lupinus albus HOM05D005570 ORTHO05D007368 1.4e-48 196.8 162 64.2
Psat7g132520 Pisum sativum HOM05D005570 ORTHO05D007368 1.4e-48 196.8 162 64.2
EL10Ac4g10242 Beta vulgaris HOM05D005570 ORTHO05D007368 1.8e-48 196.4 201 55.7
PSO357G0372 Papaver somniferum HOM05D005570 ORTHO05D007368 3.1e-48 195.7 162 61.7
ATR0751G216 Amborella trichopoda HOM05D005570 ORTHO05D007368 1.6e-47 193.4 157 63.7
Cpa.g.sc136.41 Carica papaya HOM05D005570 ORTHO05D007368 1.6e-47 193.4 142 73.9
Ca_18776_v3 Cicer arietinum L. HOM05D005570 ORTHO05D007368 1.6e-47 193.4 162 63.0
TPR.G11531 Trifolium pratense HOM05D005570 ORTHO05D007368 3.5e-47 192.2 162 64.2
unitig_26.g9513 Utricularia gibba HOM05D005570 ORTHO05D007368 4.5e-47 191.8 162 60.5
Oeu015172.1 Olea europaea HOM05D005570 ORTHO05D007368 1.7e-46 189.9 143 71.3
Lj8A137G54 Lonicera japonica HOM05D005570 ORTHO05D007368 1.5e-45 186.8 144 68.8
Medtr4g083580 Medicago truncatula HOM05D005570 ORTHO05D007368 2.5e-45 186.0 161 60.9
HPP92_013643 Vanilla planifolia HOM05D005570 ORTHO05D007368 5.5e-45 184.9 177 55.9
Ah.12g059860 Amaranthus hybridus HOM05D005570 ORTHO05D007368 1.6e-44 183.3 130 73.8
TWI36G1338 Tripterygium wilfordii HOM05D005570 ORTHO05D007368 1.6e-44 183.3 135 70.4
PSO421G0119 Papaver somniferum HOM05D005570 ORTHO05D007368 6.7e-43 177.9 139 64.7
TPR.G34081 Trifolium pratense HOM05D005570 ORTHO05D007368 8.8e-43 177.6 136 66.2
vmacro09474 Vaccinium macrocarpon HOM05D005570 ORTHO05D007368 1.5e-42 176.8 144 67.4
CDE10G0507 Ceratophyllum demersum HOM05D005570 ORTHO05D007368 6.3e-41 171.4 145 62.1
SGA_v2.0_scaffold317G48443 Striga asiatica HOM05D005570 ORTHO05D007368 1.8e-40 169.9 182 56.0
Os09g0478400 Oryza sativa ssp. japonica HOM05D005570 ORTHO05D007368 7.0e-40 167.9 145 60.0
MBI14_g13534_MAGBIO Magnolia biondii HOM05D005570 ORTHO05D007368 9.1e-40 167.5 108 75.9
SGA_v2.0_scaffold96G29016 Striga asiatica HOM05D005570 ORTHO05D007368 2.0e-39 166.4 134 68.7
Zm00001eb101470 Zea mays HOM05D005570 ORTHO05D007368 3.5e-39 165.6 147 57.8
SGA_v2.0_scaffold317G48460 Striga asiatica HOM05D005570 ORTHO05D007368 2.0e-34 149.8 135 64.4
SEGI_08222 Sequoiadendron giganteum HOM05D005570 ORTHO05D007368 5.7e-34 148.3 136 56.6
Lsat_1_v5_gn_4_24381 Lactuca sativa HOM05D005570 ORTHO05D007368 4.8e-33 145.2 103 71.8
Hund21535 Selenicereus undatus HOM05D005570 ORTHO05D007368 4.8e-33 145.2 89 77.5
Rhsim04G0030300 Rhododendron simsii HOM05D005570 ORTHO05D007368 1.6e-31 140.2 85 80.0
Potri.001G241100 Populus trichocarpa HOM05D005570 ORTHO05D007368 3.8e-30 135.6 88 84.1
SGA_v2.0_scaffold28G12060 Striga asiatica HOM05D005570 ORTHO05D007368 8.6e-30 134.4 108 65.7
Rhsim04G0030400 Rhododendron simsii HOM05D005570 ORTHO05D007368 5.5e-29 131.7 78 80.8
SGA_v2.0_scaffold2G00813 Striga asiatica HOM05D005570 ORTHO05D007368 2.8e-25 119.4 127 58.3
Gohir.D01G037901 Gossypium hirsutum HOM05D005570 ORTHO05D007368 1.4e-24 117.1 81 72.8
SGA_v2.0_scaffold323G48653 Striga asiatica HOM05D005570 ORTHO05D007368 9.2e-24 114.4 125 54.4
Mapoly0084s0063 Marchantia polymorpha HOM05D005570 ORTHO05D007368 2.7e-23 112.8 135 40.7
Potri.014G169750 Populus trichocarpa HOM05D005570 ORTHO05D007368 2.9e-22 109.4 55 98.2
Glyma.20G022600 Glycine max HOM05D005570 ORTHO05D007368 3.8e-22 109.0 99 61.6
Pp3c22_13450 Physcomitrium patens HOM05D005570 ORTHO05D007368 5.0e-22 108.6 167 38.3
Solyc07g045260.3 Solanum lycopersicum HOM05D005570 ORTHO05D007368 5.0e-22 108.6 66 77.3
Oeu031101.2 Olea europaea HOM05D005570 ORTHO05D007368 5.2e-19 98.6 53 90.6
Lsat_1_v5_gn_4_72161 Lactuca sativa HOM05D005570 ORTHO05D007368 1.3e-17 94.0 53 83.0
Potri.001G240904 Populus trichocarpa HOM05D005570 ORTHO05D007368 7.8e-15 84.7 53 81.1
SGA_v2.0_scaffold317G48459 Striga asiatica HOM05D005570 ORTHO05D007368 6.6e-14 81.6 58 69.0
Hund30621 Selenicereus undatus HOM05D005570 ORTHO05D007368 1.1e-13 80.9 74 64.9
Hund30622 Selenicereus undatus HOM05D005570 ORTHO05D007368 1.1e-13 80.9 74 64.9
CBR_g57071 Chara braunii HOM05D001740 ORTHO05D001468 4.4e-10 68.9 85 35.3


User provided reference genes

Program Settings