Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.014G163200 Populus trichocarpa HOM05D006660 ORTHO05D008184 0.0e+00 1167.1 586 100.0
Sabra14G0124600 Salix brachista HOM05D006660 ORTHO05D008184 0.0e+00 1109.7 587 94.5
TWI36G0095 Tripterygium wilfordii HOM05D006660 ORTHO05D008184 2.0e-277 958.7 572 81.6
Manes.12G060700 Manihot esculenta HOM05D006660 ORTHO05D008184 2.6e-277 958.4 582 82.5
Thecc.01G186300 Theobroma cacao HOM05D006660 ORTHO05D008184 3.5e-274 948.0 576 82.3
Gorai.001G097700 Gossypium raimondii HOM05D006660 ORTHO05D008184 4.9e-268 927.5 575 79.3
Rhsim04G0045800 Rhododendron simsii HOM05D006660 ORTHO05D008184 6.4e-268 927.2 580 80.0
CSS0034515 Camellia sinensis var. sinensis HOM05D006660 ORTHO05D008184 2.4e-267 925.2 568 81.0
Duzib133G0254 Durio zibethinus HOM05D006660 ORTHO05D008184 2.4e-267 925.2 573 79.8
PGR142G4370 Punica granatum HOM05D006660 ORTHO05D008184 2.4e-267 925.2 575 78.3
Atru.chr6.3323 Acer truncatum HOM05D006660 ORTHO05D008184 2.1e-266 922.2 576 79.2
Ciclev10014722m.g Citrus clementina HOM05D006660 ORTHO05D008184 7.8e-266 920.2 583 78.0
Actinidia10783 Actinidia chinensis HOM05D006660 ORTHO05D008184 2.3e-265 918.7 572 80.6
Eucgr.K00713 Eucalyptus grandis HOM05D006660 ORTHO05D008184 8.6e-265 916.8 580 76.7
Nn1g07385 Nelumbo nucifera HOM05D006660 ORTHO05D008184 8.6e-265 916.8 570 79.1
RcHm_v2.0_Chr2g0157231 Rosa chinensis HOM05D006660 ORTHO05D008184 4.3e-264 914.4 585 78.3
TAR626G1025 Trochodendron aralioides HOM05D006660 ORTHO05D008184 5.6e-264 914.1 564 79.3
Nitab4.5_0000130g0170 Nicotiana tabacum HOM05D006660 ORTHO05D008184 7.3e-264 913.7 565 79.6
Prupe.3G205300 Prunus persica HOM05D006660 ORTHO05D008184 2.4e-262 908.7 577 77.6
FAN14G2696 Fragaria x ananassa HOM05D006660 ORTHO05D008184 1.5e-261 906.0 586 77.3
FAN14G4026 Fragaria x ananassa HOM05D006660 ORTHO05D008184 1.5e-261 906.0 586 77.3
CANSAT64G1453 Cannabis sativa HOM05D006660 ORTHO05D008184 2.6e-261 905.2 565 78.4
Nitab4.5_0008746g0020 Nicotiana tabacum HOM05D006660 ORTHO05D008184 3.4e-261 904.8 559 80.1
FvH4_6g41550 Fragaria vesca HOM05D006660 ORTHO05D008184 5.8e-261 904.0 586 77.1
FAN02G1797 Fragaria x ananassa HOM05D006660 ORTHO05D008184 7.6e-261 903.7 582 77.5
CAN.G784.8 Capsicum annuum HOM05D006660 ORTHO05D008184 3.2e-259 898.3 559 78.4
PSO541G2904 Papaver somniferum HOM05D006660 ORTHO05D008184 7.1e-259 897.1 563 77.1
Solyc07g049590.3 Solanum lycopersicum HOM05D006660 ORTHO05D008184 2.1e-258 895.6 560 78.6
arahy.Tifrunner.gnm1.ann1.7S53TL Arachis hypogaea HOM05D006660 ORTHO05D008184 4.6e-258 894.4 570 77.7
arahy.Tifrunner.gnm1.ann1.GN08CG Arachis hypogaea HOM05D006660 ORTHO05D008184 4.6e-258 894.4 570 77.7
arahy.Tifrunner.gnm1.ann1.V90YU5 Arachis hypogaea HOM05D006660 ORTHO05D008184 1.0e-257 893.3 556 78.8
PSO675G7408 Papaver somniferum HOM05D006660 ORTHO05D008184 1.3e-257 892.9 563 77.3
FAN05G5067 Fragaria x ananassa HOM05D006660 ORTHO05D008184 5.1e-257 891.0 582 77.0
Peaxi162Scf01333g00136 Petunia axillaris HOM05D006660 ORTHO05D008184 2.5e-256 888.6 560 78.8
Sopen07g024990 Solanum pennellii HOM05D006660 ORTHO05D008184 2.5e-256 888.6 560 78.0
PGSC0003DMG400006428 Solanum tuberosum HOM05D006660 ORTHO05D008184 2.5e-256 888.6 560 78.0
Gohir.A07G086100 Gossypium hirsutum HOM05D006660 ORTHO05D008184 2.8e-255 885.2 575 76.5
Cc10_g08860 Coffea canephora HOM05D006660 ORTHO05D008184 4.0e-254 881.3 568 75.7
Ca_16352_v3 Cicer arietinum L. HOM05D006660 ORTHO05D008184 1.4e-251 872.8 559 76.7
Sc20g0003860 Simmondsia chinensis HOM05D006660 ORTHO05D008184 9.3e-251 870.2 564 76.2
CsaV3_2G034260 Cucumis sativus L. HOM05D006660 ORTHO05D008184 2.7e-250 868.6 573 76.4
Sed0019714 Sechium edule HOM05D006660 ORTHO05D008184 3.5e-250 868.2 575 76.2
Thhalv10002462m.g Eutrema salsugineum HOM05D006660 ORTHO05D008184 1.0e-249 866.7 580 72.6
Aa31sc53G10 Aethionema arabicum HOM05D006660 ORTHO05D008184 1.3e-249 866.3 581 72.8
MELO3C019360.2 Cucumis melo HOM05D006660 ORTHO05D008184 1.7e-249 865.9 588 74.3
Medtr3g082870 Medicago truncatula HOM05D006660 ORTHO05D008184 6.6e-249 864.0 568 74.6
AT2G04740 Arabidopsis thaliana HOM05D006660 ORTHO05D008184 1.1e-248 863.2 587 71.9
THA.LOC104808860 Tarenaya hassleriana HOM05D006660 ORTHO05D008184 1.5e-248 862.8 560 74.3
ClCG02G009540 Citrullus lanatus HOM05D006660 ORTHO05D008184 1.9e-248 862.4 600 73.7
COL.COLO4_35986 Corchorus olitorius HOM05D006660 ORTHO05D008184 3.6e-247 858.2 587 73.9
TPR.G22464 Trifolium pratense HOM05D006660 ORTHO05D008184 4.8e-247 857.8 573 73.8
MSTRG.14936 Avicennia marina HOM05D006660 ORTHO05D008184 3.1e-246 855.1 568 74.5
HanXRQChr10g0306331 Helianthus annuus HOM05D006660 ORTHO05D008184 4.0e-246 854.7 568 74.8
AUR62015095 Chenopodium quinoa HOM05D006660 ORTHO05D008184 5.3e-246 854.4 561 74.2
Glyma.20G057100 Glycine max HOM05D006660 ORTHO05D008184 9.0e-246 853.6 574 73.9
DCAR_019721 Daucus carota HOM05D006660 ORTHO05D008184 1.5e-245 852.8 559 75.8
Lsat_1_v5_gn_5_124741 Lactuca sativa HOM05D006660 ORTHO05D008184 1.5e-245 852.8 558 75.1
Sp3g23370 Schrenkiella parvula HOM05D006660 ORTHO05D008184 3.4e-245 851.7 578 71.1
AL3G42350 Arabidopsis lyrata HOM05D006660 ORTHO05D008184 4.5e-245 851.3 590 71.0
Psat5g103920 Pisum sativum HOM05D006660 ORTHO05D008184 4.9e-244 847.8 588 71.9
MBI16_g31717_MAGBIO Magnolia biondii HOM05D006660 ORTHO05D008184 1.1e-243 846.7 565 73.1
Carub.0003s2635 Capsella rubella HOM05D006660 ORTHO05D008184 1.2e-242 843.2 584 71.1
Lj6g0000837 Lotus japonicus HOM05D006660 ORTHO05D008184 1.6e-242 842.8 552 76.3
CARHR102690 Cardamine hirsuta HOM05D006660 ORTHO05D008184 8.7e-241 837.0 590 70.2
SGA_v2.0_scaffold73G24530 Striga asiatica HOM05D006660 ORTHO05D008184 5.6e-240 834.3 566 73.7
BolC3t17779H Brassica oleracea HOM05D006660 ORTHO05D008184 1.1e-238 830.1 586 69.5
Aqoxy1G02841 Aquilegia oxysepala HOM05D006660 ORTHO05D008184 1.4e-238 829.7 601 69.6
BcaB08g34485 Brassica carinata HOM05D006660 ORTHO05D008184 4.0e-238 828.2 584 69.5
BraA03t13574Z Brassica rapa HOM05D006660 ORTHO05D008184 6.9e-238 827.4 586 69.3
C03p55040 Brassica napus HOM05D006660 ORTHO05D008184 1.2e-237 826.6 584 69.7
BcaC01g03192 Brassica carinata HOM05D006660 ORTHO05D008184 1.5e-237 826.2 584 69.7
A03p44410 Brassica napus HOM05D006660 ORTHO05D008184 1.5e-237 826.2 584 69.3
HPP92_017850 Vanilla planifolia HOM05D006660 ORTHO05D008184 2.9e-236 822.0 570 70.7
FAN09G0285 Fragaria x ananassa HOM05D006660 ORTHO05D008184 3.8e-236 821.6 581 72.6
EL10Ac3g05658 Beta vulgaris HOM05D006660 ORTHO05D008184 1.9e-235 819.3 561 72.0
Migut.M00006 Erythranthe guttata HOM05D006660 ORTHO05D008184 5.1e-233 811.2 571 71.8
Ah.14g082930 Amaranthus hybridus HOM05D006660 ORTHO05D008184 1.1e-232 810.1 562 71.2
AUR62017555 Chenopodium quinoa HOM05D006660 ORTHO05D008184 9.6e-232 807.0 619 66.6
Haze_12725 Corylus avellana HOM05D006660 ORTHO05D008184 1.2e-218 763.5 461 80.9
CiPaw.04G193900 Carya illinoinensis HOM05D006660 ORTHO05D008184 5.1e-217 758.1 469 78.9
Zm00001eb281240 Zea mays HOM05D006660 ORTHO05D008184 5.3e-214 748.0 570 66.1
Cpa.g.sc132.76 Carica papaya HOM05D006660 ORTHO05D008184 2.1e-210 736.1 469 75.3
Os06g0318200 Oryza sativa ssp. japonica HOM05D006660 ORTHO05D008184 1.0e-209 733.8 567 65.8
ECA234G1491 Erigeron canadensis HOM05D006660 ORTHO05D008184 1.7e-204 716.5 559 66.4
SEGI_29705 Sequoiadendron giganteum HOM05D006660 ORTHO05D008184 1.5e-203 713.4 641 58.7
vmacro09381 Vaccinium macrocarpon HOM05D006660 ORTHO05D008184 5.5e-195 684.9 413 83.1
Gohir.D07G091200 Gossypium hirsutum HOM05D006660 ORTHO05D008184 1.1e-187 660.6 428 75.7
Lalb_Chr24g0402731 Lupinus albus HOM05D006660 ORTHO05D008184 7.2e-187 657.9 425 76.0
Dinv07831 Davidia involucrata HOM05D006660 ORTHO05D008184 8.0e-186 654.4 404 79.2
VMungo1309G1541 Vigna mungo HOM05D006660 ORTHO05D008184 3.5e-181 639.0 417 75.3
Pp3c5_19510 Physcomitrium patens HOM05D006660 ORTHO05D008184 4.0e-177 625.5 625 54.1
Pp3c5_19514 Physcomitrium patens HOM05D006660 ORTHO05D008184 4.0e-177 625.5 625 54.1
Mapoly0031s0110 Marchantia polymorpha HOM05D006660 ORTHO05D008184 2.6e-176 622.9 625 53.1
Oeu040482.1 Olea europaea HOM05D006660 ORTHO05D008184 5.4e-174 615.1 403 75.7
Atru.chr6.3318 Acer truncatum HOM05D006660 ORTHO05D008184 2.0e-168 596.7 398 74.9
MD17G1109800 Malus domestica HOM05D006660 ORTHO05D008184 1.6e-165 587.0 587 55.9
ATR0712G111 Amborella trichopoda HOM05D006660 ORTHO05D008184 6.6e-164 581.6 418 69.6
CDE07G0400 Ceratophyllum demersum HOM05D006660 ORTHO05D008184 7.3e-163 578.2 403 71.2
SMO353G0185 Selaginella moellendorffii HOM05D006660 ORTHO05D008184 2.1e-149 533.5 544 51.8
Lj8A132T54 Lonicera japonica HOM05D006660 ORTHO05D008184 5.4e-142 508.8 304 80.9
GSVIVG01030415001 Vitis vinifera HOM05D006660 ORTHO05D008184 2.1e-141 506.9 310 78.7
Hund08409 Selenicereus undatus HOM05D006660 ORTHO05D008184 3.2e-126 456.4 311 70.4
AagrBONN_evm.TU.Sc2ySwM_344.2917 Anthoceros agrestis HOM05D006660 ORTHO05D008184 6.7e-124 448.7 560 45.4
CBR_g47999 Chara braunii HOM05D006660 ORTHO05D008184 9.3e-118 428.3 656 38.6
Lj8C132T7 Lonicera japonica HOM05D006660 ORTHO05D008184 3.9e-108 396.4 237 82.7
GSVIVG01030416001 Vitis vinifera HOM05D006660 ORTHO05D008184 2.8e-90 337.0 196 83.2
CDE04G2012 Ceratophyllum demersum HOM05D006660 ORTHO05D008184 1.5e-78 298.1 534 37.5
Oeu040483.1 Olea europaea HOM05D006660 ORTHO05D008184 6.5e-71 272.7 159 84.9
AagrBONN_evm.TU.Sc2ySwM_228.2541 Anthoceros agrestis HOM05D006660 ORTHO05D008184 7.8e-64 249.2 417 38.1
CDE07G1994 Ceratophyllum demersum HOM05D006660 ORTHO05D008184 9.5e-62 242.3 150 74.7
ATR0712G102 Amborella trichopoda HOM05D006660 ORTHO05D008184 2.6e-59 234.2 144 75.7
Phvul.004G085870 Phaseolus vulgaris HOM05D006660 ORTHO05D008184 1.3e-55 221.9 129 81.4
VMungo1309G0792 Vigna mungo HOM05D006660 ORTHO05D008184 3.3e-54 217.2 127 80.3
Lalb_Chr24g0402711 Lupinus albus HOM05D006660 ORTHO05D008184 1.1e-49 202.2 104 91.3
Atru.chr6.3319 Acer truncatum HOM05D006660 ORTHO05D008184 8.9e-44 182.6 159 62.9
Cpa.g.sc987.1 Carica papaya HOM05D006660 ORTHO05D008184 6.4e-42 176.4 111 79.3
vmacro09380 Vaccinium macrocarpon HOM05D006660 ORTHO05D008184 1.1e-33 149.1 176 50.0
HanXRQChr08g0218831 Helianthus annuus HOM05D006660 ORTHO05D008184 5.8e-27 126.7 68 86.8
CDE04G2605 Ceratophyllum demersum HOM05D006660 ORTHO05D008184 5.1e-15 87.0 54 72.2
Cfa027280 Carpinus fangiana HOM05D006660 ORTHO05D008184 2.8e-13 81.3 163 33.1
Cre16.g653258 Chlamydomonas reinhardtii HOM05D009399 ORTHO05D011328 3.0e-07 61.2 124 29.8
Lj2A1172G32 Lonicera japonica HOM05D002203 ORTHO05D002647 7.4e-06 56.6 166 26.5
Cre03.g144284 Chlamydomonas reinhardtii HOM05D000563 ORTHO05D000536 9.6e-06 56.2 171 27.5
HanXRQChr11g0336141 Helianthus annuus HOM05D002203 ORTHO05D002647 9.6e-06 56.2 176 25.0


User provided reference genes

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