Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.014G145300 Populus trichocarpa HOM05D006071 ORTHO05D007462 0.0e+00 1451.0 736 100.0
Sabra14G0109500 Salix brachista HOM05D006071 ORTHO05D007462 0.0e+00 1208.7 775 83.1
Manes.11G077000 Manihot esculenta HOM05D006071 ORTHO05D007462 6.0e-263 911.0 754 66.8
Dinv33279 Davidia involucrata HOM05D006071 ORTHO05D007462 1.2e-255 886.7 771 62.9
QL02p069613 Quercus lobata HOM05D006071 ORTHO05D007462 7.1e-248 860.9 770 62.7
Thecc.04G047500 Theobroma cacao HOM05D006071 ORTHO05D007462 1.6e-247 859.8 768 62.8
Haze_14947 Corylus avellana HOM05D006071 ORTHO05D007462 3.5e-247 858.6 810 59.1
Gohir.D10G081100 Gossypium hirsutum HOM05D006071 ORTHO05D007462 1.6e-239 833.2 762 61.8
TWI32G0148 Tripterygium wilfordii HOM05D006071 ORTHO05D007462 1.6e-239 833.2 766 60.6
Ciclev10014332m.g Citrus clementina HOM05D006071 ORTHO05D007462 3.5e-239 832.0 802 58.6
Duzib187G0315 Durio zibethinus HOM05D006071 ORTHO05D007462 9.6e-237 823.9 760 60.7
Gorai.011G088400 Gossypium raimondii HOM05D006071 ORTHO05D007462 1.6e-236 823.2 764 61.5
RcHm_v2.0_Chr2g0176461 Rosa chinensis HOM05D006071 ORTHO05D007462 4.9e-233 811.6 723 61.1
FAN09G3006 Fragaria x ananassa HOM05D006071 ORTHO05D007462 2.4e-232 809.3 774 59.2
Rhsim10G0001400 Rhododendron simsii HOM05D006071 ORTHO05D007462 3.9e-230 802.0 739 58.3
Prupe.3G313200 Prunus persica HOM05D006071 ORTHO05D007462 5.6e-229 798.1 781 57.6
MD17G1007100 Malus domestica HOM05D006071 ORTHO05D007462 1.1e-227 793.9 779 57.3
FAN14G4217 Fragaria x ananassa HOM05D006071 ORTHO05D007462 1.2e-226 790.4 808 56.4
CANSAT64G2805 Cannabis sativa HOM05D006071 ORTHO05D007462 3.4e-226 788.9 773 57.6
Hma1.2p1_0421F.1_g149970 Hydrangea macrophylla HOM05D006071 ORTHO05D007462 9.9e-226 787.3 782 57.8
Gohir.A10G070000 Gossypium hirsutum HOM05D006071 ORTHO05D007462 4.9e-225 785.0 772 59.6
GSVIVG01032990001 Vitis vinifera HOM05D006071 ORTHO05D007462 1.4e-219 766.9 758 57.8
CsaV3_3G027770 Cucumis sativus L. HOM05D006071 ORTHO05D007462 1.8e-219 766.5 755 58.3
Lalb_Chr24g0403151 Lupinus albus HOM05D006071 ORTHO05D007462 1.5e-218 763.5 756 57.1
Lju41A60G26 Lonicera japonica HOM05D006071 ORTHO05D007462 5.8e-218 761.5 777 56.2
TPR.G10339 Trifolium pratense HOM05D006071 ORTHO05D007462 5.8e-218 761.5 753 56.8
MELO3C014817.2 Cucumis melo HOM05D006071 ORTHO05D007462 3.8e-217 758.8 754 57.7
ClCG05G012640 Citrullus lanatus HOM05D006071 ORTHO05D007462 8.4e-217 757.7 752 57.2
arahy.Tifrunner.gnm1.ann1.FMKW1Y Arachis hypogaea HOM05D006071 ORTHO05D007462 4.2e-216 755.4 771 56.7
CiPaw.03G002300 Carya illinoinensis HOM05D006071 ORTHO05D007462 4.2e-216 755.4 603 66.0
arahy.Tifrunner.gnm1.ann1.FR25D6 Arachis hypogaea HOM05D006071 ORTHO05D007462 7.1e-216 754.6 771 56.4
MD09G1003000 Malus domestica HOM05D006071 ORTHO05D007462 7.9e-215 751.1 727 57.5
Medtr7g084020 Medicago truncatula HOM05D006071 ORTHO05D007462 1.0e-214 750.7 756 57.4
Ca_08138_v3 Cicer arietinum L. HOM05D006071 ORTHO05D007462 2.3e-214 749.6 758 56.5
vmacro22244 Vaccinium macrocarpon HOM05D006071 ORTHO05D007462 1.1e-213 747.3 728 56.3
Sed0023591 Sechium edule HOM05D006071 ORTHO05D007462 2.4e-211 739.6 756 56.7
Nn4g22141 Nelumbo nucifera HOM05D006071 ORTHO05D007462 1.2e-210 737.3 681 59.3
Lj1g0026027 Lotus japonicus HOM05D006071 ORTHO05D007462 1.0e-209 734.2 733 57.4
Phvul.001G084800 Phaseolus vulgaris HOM05D006071 ORTHO05D007462 2.9e-209 732.6 725 57.5
CSS0001742 Camellia sinensis var. sinensis HOM05D006071 ORTHO05D007462 3.8e-209 732.3 604 64.1
Glyma.19G103000 Glycine max HOM05D006071 ORTHO05D007462 1.9e-208 729.9 764 55.1
MSTRG.15572 Avicennia marina HOM05D006071 ORTHO05D007462 4.6e-207 725.3 753 55.2
PGR142G0457 Punica granatum HOM05D006071 ORTHO05D007462 6.1e-207 724.9 756 55.6
VMungo1383G1903 Vigna mungo HOM05D006071 ORTHO05D007462 6.7e-206 721.5 761 55.2
Ah.03g136370 Amaranthus hybridus HOM05D006071 ORTHO05D007462 8.2e-204 714.5 762 55.8
Glyma.16G048700 Glycine max HOM05D006071 ORTHO05D007462 1.4e-203 713.8 671 58.9
TAR629G1421 Trochodendron aralioides HOM05D006071 ORTHO05D007462 9.0e-203 711.1 756 55.2
DCAR_014471 Daucus carota HOM05D006071 ORTHO05D007462 3.8e-201 705.7 693 57.3
Sc07g0003750 Simmondsia chinensis HOM05D006071 ORTHO05D007462 7.9e-199 698.0 756 55.0
Lsat_1_v5_gn_0_22580 Lactuca sativa HOM05D006071 ORTHO05D007462 3.0e-198 696.0 756 54.8
FAN02G4165 Fragaria x ananassa HOM05D006071 ORTHO05D007462 1.5e-197 693.7 582 62.2
FvH4_6g54271 Fragaria vesca HOM05D006071 ORTHO05D007462 2.0e-197 693.3 659 59.2
Cc07_g01250 Coffea canephora HOM05D006071 ORTHO05D007462 3.3e-197 692.6 776 52.7
THA.LOC104805300 Tarenaya hassleriana HOM05D006071 ORTHO05D007462 9.7e-197 691.0 769 53.6
ECA246G2252 Erigeron canadensis HOM05D006071 ORTHO05D007462 1.4e-195 687.2 752 54.3
EL10Ac6g13395 Beta vulgaris HOM05D006071 ORTHO05D007462 1.5e-194 683.7 777 53.7
Aa31LG2G5830 Aethionema arabicum HOM05D006071 ORTHO05D007462 1.0e-193 681.0 776 53.5
Hund04198 Selenicereus undatus HOM05D006071 ORTHO05D007462 1.9e-192 676.8 777 52.0
HanXRQChr17g0550941 Helianthus annuus HOM05D006071 ORTHO05D007462 1.2e-191 674.1 751 53.3
Thhalv10003691m.g Eutrema salsugineum HOM05D006071 ORTHO05D007462 2.7e-191 672.9 778 52.1
MBI07_g41894_MAGBIO Magnolia biondii HOM05D006071 ORTHO05D007462 2.7e-191 672.9 807 50.8
Carub.0005s0473 Capsella rubella HOM05D006071 ORTHO05D007462 5.1e-190 668.7 782 52.0
Migut.K01485 Erythranthe guttata HOM05D006071 ORTHO05D007462 7.4e-189 664.8 756 53.2
SGA_v2.0_scaffold47G17632 Striga asiatica HOM05D006071 ORTHO05D007462 4.8e-188 662.1 756 54.8
Actinidia36244 Actinidia chinensis HOM05D000877 ORTHO05D001509 6.3e-188 661.8 665 55.0
Eucgr.I01601 Eucalyptus grandis HOM05D006071 ORTHO05D007462 1.1e-187 661.0 742 53.0
CARHR147750 Cardamine hirsuta HOM05D006071 ORTHO05D007462 5.3e-187 658.7 783 51.0
PSO017G0597 Papaver somniferum HOM05D006071 ORTHO05D007462 1.6e-186 657.1 775 50.8
PSO478G4855 Papaver somniferum HOM05D006071 ORTHO05D007462 1.6e-186 657.1 775 51.4
Peaxi162Scf00420g00836 Petunia axillaris HOM05D006071 ORTHO05D007462 1.0e-185 654.4 692 55.1
AUR62037834 Chenopodium quinoa HOM05D006071 ORTHO05D007462 1.7e-185 653.7 746 53.1
Nitab4.5_0002172g0120 Nicotiana tabacum HOM05D006071 ORTHO05D007462 1.9e-184 650.2 730 52.5
Aqoxy5G03151 Aquilegia oxysepala HOM05D006071 ORTHO05D007462 5.5e-184 648.7 737 51.6
Nitab4.5_0000519g0320 Nicotiana tabacum HOM05D006071 ORTHO05D007462 1.2e-183 647.5 733 52.8
AL5G15580 Arabidopsis lyrata HOM05D006071 ORTHO05D007462 2.1e-183 646.7 759 49.8
AT3G26730 Arabidopsis thaliana HOM05D006071 ORTHO05D007462 2.7e-183 646.4 783 51.1
Sp2g15850 Schrenkiella parvula HOM05D006071 ORTHO05D007462 2.3e-182 643.3 776 50.4
BcaB07g30217 Brassica carinata HOM05D006071 ORTHO05D007462 5.2e-182 642.1 655 54.8
Sopen02g039190 Solanum pennellii HOM05D006071 ORTHO05D007462 6.3e-180 635.2 639 55.4
Hma1.2p1_0421F.1_g149975 Hydrangea macrophylla HOM05D006071 ORTHO05D007462 9.1e-179 631.3 475 66.1
ATR0582G122 Amborella trichopoda HOM05D006071 ORTHO05D007462 2.7e-178 629.8 785 47.5
BraA02t08478Z Brassica rapa HOM05D006071 ORTHO05D007462 4.5e-178 629.0 780 50.3
Oeu003415.3 Olea europaea HOM05D006071 ORTHO05D007462 1.7e-177 627.1 813 49.6
A02p34700 Brassica napus HOM05D006071 ORTHO05D007462 5.0e-177 625.5 777 50.3
C02p53260 Brassica napus HOM05D006071 ORTHO05D007462 4.2e-176 622.5 783 48.9
BcaC03g17381 Brassica carinata HOM05D006071 ORTHO05D007462 4.7e-175 619.0 779 48.8
BolC2t11398H Brassica oleracea HOM05D006071 ORTHO05D007462 3.4e-173 612.8 773 49.8
Os02g0516600 Oryza sativa ssp. japonica HOM05D006071 ORTHO05D007462 5.0e-161 572.4 780 47.8
CDE05G0431 Ceratophyllum demersum HOM05D000877 ORTHO05D001509 3.3e-160 569.7 753 46.5
Hma1.2p1_0033F.1_g021090 Hydrangea macrophylla HOM05D006071 ORTHO05D007462 9.8e-157 558.1 477 61.2
Zm00001eb242020 Zea mays HOM05D006071 ORTHO05D007462 1.0e-153 548.1 775 45.5
HPP92_024403 Vanilla planifolia HOM05D006071 ORTHO05D007462 6.6e-153 545.4 656 48.3
Atru.chr6.2689 Acer truncatum HOM05D006071 ORTHO05D007462 1.5e-149 534.3 419 67.1
COL.COLO4_13369 Corchorus olitorius HOM05D006071 ORTHO05D007462 5.8e-133 479.2 711 45.9
Psat3g093480 Pisum sativum HOM05D006071 ORTHO05D007462 5.8e-133 479.2 493 56.6
unitig_0.g2406 Utricularia gibba HOM05D006071 ORTHO05D007462 7.6e-133 478.8 609 47.8
SEGI_23511 Sequoiadendron giganteum HOM05D006071 ORTHO05D007462 1.1e-131 474.9 836 40.1
Duzib147G1044 Durio zibethinus HOM05D006071 ORTHO05D007462 1.8e-126 457.6 589 49.9
AUR62041072 Chenopodium quinoa HOM05D006071 ORTHO05D007462 2.2e-124 450.7 524 50.8
Mapoly0006s0082 Marchantia polymorpha HOM05D006071 ORTHO05D007462 4.9e-116 422.9 675 39.4
SMO141G0304 Selaginella moellendorffii HOM05D006071 ORTHO05D007462 3.2e-115 420.2 809 38.9
CSS0035612 Camellia sinensis var. sinensis HOM05D006071 ORTHO05D007462 6.9e-110 402.5 485 48.2
Pp3c20_8910 Physcomitrium patens HOM05D006071 ORTHO05D007462 1.1e-104 385.2 740 37.3
SHI11389 Sapria himalayana HOM05D006071 ORTHO05D007462 1.5e-101 374.8 489 45.8
Solyc02g094510.4 Solanum lycopersicum HOM05D006071 ORTHO05D007462 7.2e-75 286.2 379 48.5
CBR_g4363 Chara braunii HOM05D006071 ORTHO05D007462 9.4e-75 285.8 798 30.6
AagrBONN_evm.TU.Sc2ySwM_344.4297 Anthoceros agrestis HOM05D006071 ORTHO05D007462 7.7e-69 266.2 726 32.0
Psat2g087400 Pisum sativum HOM05D006071 ORTHO05D007462 2.1e-58 231.5 327 47.1
Psat2g052360 Pisum sativum HOM05D006071 ORTHO05D007462 5.7e-56 223.4 460 38.7
AUR62041071 Chenopodium quinoa HOM05D006071 ORTHO05D007462 4.5e-53 213.8 225 58.7
CDE05G1324 Ceratophyllum demersum HOM05D006071 ORTHO05D007462 1.8e-46 191.8 235 48.5
HanXRQChr17g0550971 Helianthus annuus HOM05D006071 ORTHO05D007462 4.3e-43 180.6 199 50.3
Atru.chr6.2690 Acer truncatum HOM05D006071 ORTHO05D007462 1.4e-41 175.6 196 56.6
MCO15G395 Micromonas commoda HOM05D006071 ORTHO05D007462 8.0e-34 149.8 765 23.3
HanXRQChr17g0550951 Helianthus annuus HOM05D006071 ORTHO05D007462 1.5e-32 145.6 242 44.6
Cre03.g144687 Chlamydomonas reinhardtii HOM05D006071 ORTHO05D007462 2.0e-32 145.2 629 23.5
Psat0s2046g0080 Pisum sativum HOM05D006071 ORTHO05D007462 1.7e-28 132.1 137 57.7
Sc07g0003760 Simmondsia chinensis HOM05D006071 ORTHO05D007462 9.5e-27 126.3 118 55.9
Psat0s2046g0120 Pisum sativum HOM05D006071 ORTHO05D007462 4.1e-22 110.9 94 57.4
Lj1g0013684 Lotus japonicus HOM05D006071 ORTHO05D007462 4.6e-21 107.5 127 51.2
Psat2g087520 Pisum sativum HOM05D006071 ORTHO05D007462 3.9e-20 104.4 142 50.7
Atru.chr6.2688 Acer truncatum HOM05D006071 ORTHO05D007462 8.6e-20 103.2 93 64.5
Actinidia09845 Actinidia chinensis HOM05D006071 ORTHO05D007462 4.7e-18 97.4 92 52.2
Cre16.g681251 Chlamydomonas reinhardtii HOM05D006071 ORTHO05D007462 5.4e-14 84.0 184 30.4
CDE05G2071 Ceratophyllum demersum HOM05D006071 ORTHO05D007462 1.1e-11 76.3 111 43.2
Actinidia09844 Actinidia chinensis HOM05D006071 ORTHO05D007462 3.3e-11 74.7 75 57.3
unitig_0.g2405 Utricularia gibba HOM05D006071 ORTHO05D007462 5.2e-09 67.4 102 45.1
Hma1.2p1_0868F.1_g230520 Hydrangea macrophylla HOM05D006071 ORTHO05D007462 3.8e-07 61.2 156 35.3
Nitab4.5_0002158g0130 Nicotiana tabacum HOM05D000463 ORTHO05D001294 6.4e-07 60.5 100 32.0
Solyc02g078320.3 Solanum lycopersicum HOM05D000463 ORTHO05D001294 6.4e-07 60.5 151 27.2
Cfa014606 Carpinus fangiana HOM05D000463 ORTHO05D001294 8.4e-07 60.1 104 30.8
Haze_13153 Corylus avellana HOM05D000463 ORTHO05D001294 8.4e-07 60.1 104 30.8
MD11G1245000 Malus domestica HOM05D000463 ORTHO05D001294 1.1e-06 59.7 112 28.6
Sopen02g023160 Solanum pennellii HOM05D000463 ORTHO05D001294 1.4e-06 59.3 87 33.3
PGSC0003DMG400029719 Solanum tuberosum HOM05D000463 ORTHO05D001294 1.4e-06 59.3 87 33.3
MD03G1226000 Malus domestica HOM05D000463 ORTHO05D001294 2.4e-06 58.5 104 29.8
Nitab4.5_0004411g0010 Nicotiana tabacum HOM05D000463 ORTHO05D001294 3.2e-06 58.2 60 38.3
ClCG11G018130 Citrullus lanatus HOM05D000463 ORTHO05D001294 4.2e-06 57.8 60 38.3
Actinidia12815 Actinidia chinensis HOM05D000463 ORTHO05D001294 5.4e-06 57.4 114 28.9
Zm00001eb427210 Zea mays HOM05D000463 ORTHO05D001294 5.4e-06 57.4 64 37.5
BcaC04g23967 Brassica carinata HOM05D000463 ORTHO05D001294 7.1e-06 57.0 60 40.0
C09p02880 Brassica napus HOM05D000463 ORTHO05D001294 7.1e-06 57.0 60 40.0
BolC9t53213H Brassica oleracea HOM05D000463 ORTHO05D001294 7.1e-06 57.0 60 40.0
PSO017G5908 Papaver somniferum HOM05D000515 ORTHO05D005511 7.1e-06 57.0 59 47.5
unitig_744.g24406 Utricularia gibba HOM05D000463 ORTHO05D004638 7.1e-06 57.0 60 43.3
VMungo1080G0279 Vigna mungo HOM05D000463 ORTHO05D001294 7.1e-06 57.0 108 28.7
Ah.14g089430 Amaranthus hybridus HOM05D000463 ORTHO05D001294 9.3e-06 56.6 61 36.1
Peaxi162Scf00736g00046 Petunia axillaris HOM05D000463 ORTHO05D001294 9.3e-06 56.6 67 34.3


User provided reference genes

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