Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.014G140000 Populus trichocarpa HOM05D004039 ORTHO05D004573 6.3e-109 397.5 210 100.0
Sabra14G0105500 Salix brachista HOM05D000032 ORTHO05D009383 1.3e-82 310.1 205 81.0
Manes.11G073200 Manihot esculenta HOM05D004039 ORTHO05D004573 9.0e-55 217.6 218 60.1
Manes.04G096800 Manihot esculenta HOM05D004039 ORTHO05D004573 5.6e-49 198.4 201 58.2
GSVIVG01032947001 Vitis vinifera HOM05D004039 ORTHO05D004573 9.6e-49 197.6 205 57.6
Thecc.04G052000 Theobroma cacao HOM05D004039 ORTHO05D004573 1.5e-46 190.3 214 56.1
Lalb_Chr14g0364131 Lupinus albus HOM05D004039 ORTHO05D004573 3.5e-43 179.1 213 52.1
Cfa009471 Carpinus fangiana HOM05D004039 ORTHO05D004573 1.0e-42 177.6 205 48.3
Haze_12527 Corylus avellana HOM05D004039 ORTHO05D004573 6.7e-42 174.9 207 51.2
Atru.chr12.1473 Acer truncatum HOM05D004039 ORTHO05D004573 1.5e-41 173.7 205 49.8
Glyma.19G106500 Glycine max HOM05D004039 ORTHO05D004573 3.3e-41 172.6 214 51.9
Gohir.D12G146700 Gossypium hirsutum HOM05D004039 ORTHO05D004573 4.3e-41 172.2 207 51.7
Phvul.001G098500 Phaseolus vulgaris HOM05D004039 ORTHO05D004573 4.3e-41 172.2 204 52.5
QL03p048351 Quercus lobata HOM05D004039 ORTHO05D004573 4.3e-41 172.2 205 47.8
Gohir.A12G141800 Gossypium hirsutum HOM05D004039 ORTHO05D004573 5.6e-41 171.8 207 51.7
QL02p068241 Quercus lobata HOM05D004039 ORTHO05D004573 5.6e-41 171.8 221 52.0
VMungo1302G0001 Vigna mungo HOM05D004039 ORTHO05D004573 7.4e-41 171.4 206 53.9
Ciclev10030001m.g Citrus clementina HOM05D004039 ORTHO05D004573 1.3e-40 170.6 206 49.0
Hma1.2p1_0738F.1_g210940 Hydrangea macrophylla HOM05D004039 ORTHO05D004573 1.6e-40 170.2 203 49.3
Gorai.008G157900 Gossypium raimondii HOM05D004039 ORTHO05D004573 2.1e-40 169.9 210 51.9
Ciclev10016691m.g Citrus clementina HOM05D004039 ORTHO05D004573 2.8e-40 169.5 217 50.7
Duzib187G1305 Durio zibethinus HOM05D004039 ORTHO05D004573 2.8e-40 169.5 215 48.8
Potri.003G160300 Populus trichocarpa HOM05D004039 ORTHO05D004573 3.7e-40 169.1 204 50.0
CiPaw.05G098500 Carya illinoinensis HOM05D004039 ORTHO05D004573 4.8e-40 168.7 208 47.6
MD13G1134000 Malus domestica HOM05D004039 ORTHO05D004573 1.1e-39 167.5 207 51.7
PGR042G1501 Punica granatum HOM05D004039 ORTHO05D004573 1.4e-39 167.2 226 48.2
Prupe.1G211600 Prunus persica HOM05D004039 ORTHO05D004573 1.8e-39 166.8 208 49.0
CSS0018669 Camellia sinensis var. sinensis HOM05D004039 ORTHO05D004573 2.4e-39 166.4 203 48.8
MD16G1144600 Malus domestica HOM05D004039 ORTHO05D004573 3.1e-39 166.0 207 52.2
Lalb_Chr24g0402991 Lupinus albus HOM05D004039 ORTHO05D004573 6.9e-39 164.9 214 48.1
Glyma.16G045200 Glycine max HOM05D004039 ORTHO05D004573 1.2e-38 164.1 215 48.8
Ca_08235_v3 Cicer arietinum L. HOM05D004039 ORTHO05D004573 1.5e-38 163.7 221 47.5
Atru.chr6.2731 Acer truncatum HOM05D004039 ORTHO05D004573 3.4e-38 162.5 217 48.8
RcHm_v2.0_Chr4g0428421 Rosa chinensis HOM05D004039 ORTHO05D004573 5.8e-38 161.8 208 46.2
Cpa.g.sc70.36 Carica papaya HOM05D004039 ORTHO05D004573 1.3e-37 160.6 205 49.3
COL.COLO4_13404 Corchorus olitorius HOM05D004039 ORTHO05D004573 1.7e-37 160.2 207 51.2
CiPaw.06G111200 Carya illinoinensis HOM05D004039 ORTHO05D004573 2.2e-37 159.8 214 48.1
Medtr7g084740 Medicago truncatula HOM05D004039 ORTHO05D004573 2.2e-37 159.8 216 48.1
Eucgr.B03568 Eucalyptus grandis HOM05D004039 ORTHO05D004573 2.9e-37 159.5 206 46.6
FvH4_4g22190 Fragaria vesca HOM05D004039 ORTHO05D004573 3.8e-37 159.1 210 44.8
Manes.08G099400 Manihot esculenta HOM05D004039 ORTHO05D004573 3.8e-37 159.1 205 46.3
Oeu010264.1 Olea europaea HOM05D004039 ORTHO05D004573 4.9e-37 158.7 202 44.6
TWI75G0895 Tripterygium wilfordii HOM05D004039 ORTHO05D004573 8.4e-37 157.9 204 48.0
Sabra03G0116500 Salix brachista HOM05D004039 ORTHO05D004573 4.2e-36 155.6 204 48.0
FAN07G2708 Fragaria x ananassa HOM05D004039 ORTHO05D004573 7.1e-36 154.8 210 44.3
FAN17G1354 Fragaria x ananassa HOM05D004039 ORTHO05D004573 9.3e-36 154.5 207 44.9
Lj1g0002386 Lotus japonicus HOM05D004039 ORTHO05D004573 1.6e-35 153.7 208 51.0
Psat3g089920 Pisum sativum HOM05D004039 ORTHO05D004573 2.7e-35 152.9 216 44.0
HPP92_025084 Vanilla planifolia HOM05D004039 ORTHO05D004573 3.5e-35 152.5 209 46.9
Cpa.g.sc686.1 Carica papaya HOM05D004039 ORTHO05D004573 7.9e-35 151.4 205 44.9
Psat3g090520 Pisum sativum HOM05D004039 ORTHO05D004573 1.0e-34 151.0 210 47.1
MBI11_g23197_MAGBIO Magnolia biondii HOM05D004039 ORTHO05D004573 1.3e-34 150.6 205 45.4
Aa31LG3G14220 Aethionema arabicum HOM05D004039 ORTHO05D004573 1.8e-34 150.2 207 46.9
Haze_14987 Corylus avellana HOM05D004039 ORTHO05D004573 1.8e-34 150.2 219 46.6
Medtr7g084710 Medicago truncatula HOM05D004039 ORTHO05D004573 2.3e-34 149.8 219 45.7
AL8G19920 Arabidopsis lyrata HOM05D004039 ORTHO05D004573 1.1e-33 147.5 210 44.3
BolC9t53384H Brassica oleracea HOM05D004039 ORTHO05D004573 3.3e-33 146.0 207 45.9
Cfa007136 Carpinus fangiana HOM05D004039 ORTHO05D004573 3.3e-33 146.0 219 47.0
Thhalv10005412m.g Eutrema salsugineum HOM05D004039 ORTHO05D004573 4.3e-33 145.6 211 45.0
THA.LOC104801433 Tarenaya hassleriana HOM05D004039 ORTHO05D004573 4.3e-33 145.6 209 46.4
TAR374G0420 Trochodendron aralioides HOM05D004039 ORTHO05D004573 4.3e-33 145.6 206 44.2
BcaC04g23799 Brassica carinata HOM05D004039 ORTHO05D004573 5.7e-33 145.2 207 45.9
TPR.G31659 Trifolium pratense HOM05D004039 ORTHO05D004573 9.6e-33 144.4 222 43.7
AUR62031493 Chenopodium quinoa HOM05D004039 ORTHO05D004573 1.6e-32 143.7 207 43.0
Lalb_Chr21g0317001 Lupinus albus HOM05D004039 ORTHO05D004573 2.1e-32 143.3 208 45.2
ATR0582G327 Amborella trichopoda HOM05D004039 ORTHO05D004573 2.8e-32 142.9 204 46.1
A02p37190 Brassica napus HOM05D004039 ORTHO05D004573 2.8e-32 142.9 210 43.8
BcaC03g17621 Brassica carinata HOM05D004039 ORTHO05D004573 3.7e-32 142.5 210 44.3
C02p56210 Brassica napus HOM05D004039 ORTHO05D004573 3.7e-32 142.5 210 44.3
BolC2t11677H Brassica oleracea HOM05D004039 ORTHO05D004573 3.7e-32 142.5 210 44.3
BraA02t08705Z Brassica rapa HOM05D004039 ORTHO05D004573 4.8e-32 142.1 210 43.8
AT5G47920 Arabidopsis thaliana HOM05D004039 ORTHO05D004573 6.2e-32 141.7 211 45.0
PGSC0003DMG400011591 Solanum tuberosum HOM05D004039 ORTHO05D004573 1.1e-31 141.0 208 45.7
BcaB04g19545 Brassica carinata HOM05D004039 ORTHO05D004573 1.4e-31 140.6 207 44.9
THA.LOC104827510 Tarenaya hassleriana HOM05D004039 ORTHO05D004573 1.8e-31 140.2 213 43.7
Thecc.01G239800 Theobroma cacao HOM05D004039 ORTHO05D004573 3.1e-31 139.4 210 43.8
BcaB07g29998 Brassica carinata HOM05D004039 ORTHO05D004573 4.1e-31 139.0 210 43.3
Sed0004494 Sechium edule HOM05D004039 ORTHO05D004573 4.1e-31 139.0 213 39.4
PGR102G1502 Punica granatum HOM05D004039 ORTHO05D004573 5.3e-31 138.7 206 44.7
EL10Ac2g04246 Beta vulgaris HOM05D004039 ORTHO05D004573 9.0e-31 137.9 208 43.3
Ah.16g104320 Amaranthus hybridus HOM05D004039 ORTHO05D004573 2.6e-30 136.3 212 42.0
ClCG10G013010 Citrullus lanatus HOM05D004039 ORTHO05D004573 2.6e-30 136.3 214 39.3
Carub.0008s0748 Capsella rubella HOM05D004039 ORTHO05D004573 3.4e-30 136.0 211 43.1
AUR62012365 Chenopodium quinoa HOM05D004039 ORTHO05D004573 4.5e-30 135.6 210 42.9
CAN.G1588.13 Capsicum annuum HOM05D004039 ORTHO05D004573 5.8e-30 135.2 207 43.0
BraA09t36066Z Brassica rapa HOM05D004039 ORTHO05D004573 7.6e-30 134.8 207 44.4
Psat3g090560 Pisum sativum HOM05D004039 ORTHO05D004573 7.6e-30 134.8 254 37.8
CDE05G3127 Ceratophyllum demersum HOM05D004039 ORTHO05D004573 1.0e-29 134.4 210 39.0
CARHR291780 Cardamine hirsuta HOM05D004039 ORTHO05D004573 1.3e-29 134.0 210 43.3
SHI11395 Sapria himalayana HOM05D004039 ORTHO05D004573 1.3e-29 134.0 210 43.8
Duzib205G0448 Durio zibethinus HOM05D001017 ORTHO05D001025 1.7e-29 133.7 196 45.9
Sopen09g034240 Solanum pennellii HOM05D004039 ORTHO05D004573 2.2e-29 133.3 209 43.5
C09p04550 Brassica napus HOM05D004039 ORTHO05D004573 2.9e-29 132.9 207 44.4
Gohir.D03G099900 Gossypium hirsutum HOM05D004039 ORTHO05D004573 2.9e-29 132.9 212 44.8
Gorai.003G105000 Gossypium raimondii HOM05D004039 ORTHO05D004573 2.9e-29 132.9 212 44.8
MELO3C026747.2 Cucumis melo HOM05D004039 ORTHO05D004573 3.8e-29 132.5 215 38.6
Nn3g16207 Nelumbo nucifera HOM05D004039 ORTHO05D004573 5.0e-29 132.1 206 44.2
Eucgr.I01568 Eucalyptus grandis HOM05D004039 ORTHO05D004573 8.4e-29 131.3 204 42.6
Gohir.A03G073400 Gossypium hirsutum HOM05D004039 ORTHO05D004573 8.4e-29 131.3 212 44.3
AT5G13880 Arabidopsis thaliana HOM05D004039 ORTHO05D004573 7.1e-28 128.3 197 43.1
Sc11g0000030 Simmondsia chinensis HOM05D004039 ORTHO05D004573 7.1e-28 128.3 217 40.6
Gohir.D09G002400 Gossypium hirsutum HOM05D004039 ORTHO05D004573 1.6e-27 127.1 206 42.2
Gorai.006G002900 Gossypium raimondii HOM05D004039 ORTHO05D004573 1.6e-27 127.1 206 42.2
TWI12G1264 Tripterygium wilfordii HOM05D004039 ORTHO05D004573 1.6e-27 127.1 197 46.2
Cc02_g30640 Coffea canephora HOM05D004039 ORTHO05D004573 2.7e-27 126.3 220 41.8
CANSAT64G1067 Cannabis sativa HOM05D004039 ORTHO05D004573 3.5e-27 125.9 215 42.3
Medtr7g084720 Medicago truncatula HOM05D004039 ORTHO05D004573 3.5e-27 125.9 194 44.3
BraA10t44513Z Brassica rapa HOM05D004039 ORTHO05D004573 1.0e-26 124.4 202 43.6
BcaC04g24246 Brassica carinata HOM05D004039 ORTHO05D004573 1.3e-26 124.0 201 42.3
A10p24480 Brassica napus HOM05D004039 ORTHO05D004573 1.3e-26 124.0 205 43.4
Glyma.02G068200 Glycine max HOM05D004039 ORTHO05D004573 1.3e-26 124.0 248 37.9
Gohir.A09G002600 Gossypium hirsutum HOM05D004039 ORTHO05D004573 2.3e-26 123.2 201 43.8
Sp6g30120 Schrenkiella parvula HOM05D004039 ORTHO05D004573 2.3e-26 123.2 206 43.7
MD17G1003900 Malus domestica HOM05D004039 ORTHO05D004573 3.0e-26 122.9 237 37.6
COL.COLO4_07108 Corchorus olitorius HOM05D004039 ORTHO05D004573 3.9e-26 122.5 214 42.1
Thhalv10014767m.g Eutrema salsugineum HOM05D004039 ORTHO05D004573 3.9e-26 122.5 197 42.6
AL6G24520 Arabidopsis lyrata HOM05D004039 ORTHO05D004573 5.1e-26 122.1 197 41.6
Nitab4.5_0019080g0010 Nicotiana tabacum HOM05D004039 ORTHO05D004573 8.7e-26 121.3 193 43.0
Sabra01G0049400 Salix brachista HOM05D004039 ORTHO05D004573 8.7e-26 121.3 203 41.9
Carub.0006s1207 Capsella rubella HOM05D004039 ORTHO05D004573 1.1e-25 120.9 203 42.4
Eucgr.G01911 Eucalyptus grandis HOM05D004039 ORTHO05D004573 1.5e-25 120.6 216 42.6
BcaC04g19071 Brassica carinata HOM05D004039 ORTHO05D004573 2.5e-25 119.8 201 41.8
C09p63220 Brassica napus HOM05D004039 ORTHO05D004573 2.5e-25 119.8 201 41.8
BolC9t59158H Brassica oleracea HOM05D004039 ORTHO05D004573 2.5e-25 119.8 201 41.8
Solyc09g091270.3 Solanum lycopersicum HOM05D004039 ORTHO05D004573 2.5e-25 119.8 180 45.0
BcaC06g30835 Brassica carinata HOM05D004039 ORTHO05D004573 7.4e-25 118.2 187 41.7
BolC7t44401H Brassica oleracea HOM05D004039 ORTHO05D004573 7.4e-25 118.2 205 40.5
PSO478G3045 Papaver somniferum HOM05D004039 ORTHO05D004573 7.4e-25 118.2 207 41.5
HanXRQChr10g0319941 Helianthus annuus HOM05D004039 ORTHO05D004573 1.6e-24 117.1 211 42.2
PSO017G5432 Papaver somniferum HOM05D004039 ORTHO05D004573 6.3e-24 115.2 207 40.1
A09p04290 Brassica napus HOM05D004039 ORTHO05D004573 8.2e-24 114.8 198 42.4
Phvul.004G067800 Phaseolus vulgaris HOM05D004039 ORTHO05D004573 8.2e-24 114.8 201 39.8
Dinv06937 Davidia involucrata HOM05D004039 ORTHO05D004573 2.4e-23 113.2 192 42.7
Sp2g18420 Schrenkiella parvula HOM05D004039 ORTHO05D004573 4.1e-23 112.5 210 40.5
C03p07240 Brassica napus HOM05D004039 ORTHO05D004573 6.9e-23 111.7 196 41.3
BolC3t13225H Brassica oleracea HOM05D004039 ORTHO05D004573 6.9e-23 111.7 196 41.3
A06p39450 Brassica napus HOM05D004039 ORTHO05D004573 1.5e-22 110.5 195 39.0
BraA06t26860Z Brassica rapa HOM05D004039 ORTHO05D004573 1.5e-22 110.5 205 38.0
BcaB01g05331 Brassica carinata HOM05D004039 ORTHO05D004573 3.4e-22 109.4 197 40.6
C07p38820 Brassica napus HOM05D004039 ORTHO05D004573 3.4e-22 109.4 195 39.0
Prupe.3G315300 Prunus persica HOM05D004039 ORTHO05D004573 1.0e-21 107.8 237 37.6
MBI07_g42011_MAGBIO Magnolia biondii HOM05D004039 ORTHO05D004573 5.0e-21 105.5 212 33.5
CiPaw.14G093600 Carya illinoinensis HOM05D004039 ORTHO05D004573 6.5e-21 105.1 196 41.8
A03p06250 Brassica napus HOM05D004039 ORTHO05D004573 8.5e-21 104.8 192 40.6
BraA03t09957Z Brassica rapa HOM05D004039 ORTHO05D004573 8.5e-21 104.8 192 40.6
GSVIVG01001118001 Vitis vinifera HOM05D004039 ORTHO05D011171 8.5e-21 104.8 96 62.5
TPR.G31663 Trifolium pratense HOM05D004039 ORTHO05D004573 1.1e-20 104.4 166 41.6
Zm00001eb085640 Zea mays HOM05D004039 ORTHO05D004573 1.4e-20 104.0 217 34.6
Peaxi162Scf00047g00153 Petunia axillaris HOM05D004039 ORTHO05D004573 5.5e-20 102.1 167 41.3
CARHR199550 Cardamine hirsuta HOM05D004039 ORTHO05D004573 9.4e-20 101.3 196 37.8
DCAR_031611 Daucus carota HOM05D004039 ORTHO05D004573 9.4e-20 101.3 203 38.4
Rhsim12G0091100 Rhododendron simsii HOM05D004039 ORTHO05D004573 9.4e-20 101.3 189 38.6
CsaV3_3G032870 Cucumis sativus L. HOM05D004039 ORTHO05D004573 2.3e-18 96.7 214 32.7
Migut.K01132 Erythranthe guttata HOM05D004039 ORTHO05D004573 8.8e-18 94.7 221 33.9
Aqoxy3G01771 Aquilegia oxysepala HOM05D004039 ORTHO05D004573 1.1e-17 94.4 70 67.1
Rhsim08G0037500 Rhododendron simsii HOM05D004039 ORTHO05D000739 7.4e-17 91.7 200 39.5
CDE06G1383 Ceratophyllum demersum HOM05D004039 ORTHO05D004573 9.7e-17 91.3 204 34.8
CDE02G1703 Ceratophyllum demersum HOM05D004039 ORTHO05D004573 2.2e-16 90.1 204 33.8
SGA_v2.0_scaffold258G45761 Striga asiatica HOM05D004039 ORTHO05D004573 4.8e-16 89.0 126 46.0
Nitab4.5_0002182g0030 Nicotiana tabacum HOM05D004039 ORTHO05D004573 1.4e-15 87.4 82 57.3
Os04g0382400 Oryza sativa ssp. japonica HOM05D004039 ORTHO05D004573 2.0e-14 83.6 206 30.1
FAN12G1550 Fragaria x ananassa HOM05D004039 ORTHO05D004573 5.0e-13 79.0 133 35.3
Zm00001eb181000 Zea mays HOM05D004039 ORTHO05D004573 5.0e-13 79.0 208 30.3
ECA248G3450 Erigeron canadensis HOM05D000009 ORTHO05D000008 3.2e-12 76.3 98 48.0
PGR119G1683 Punica granatum HOM05D004039 ORTHO05D004573 4.2e-12 75.9 210 34.3
Sed0011010 Sechium edule HOM05D004039 ORTHO05D004573 9.4e-12 74.7 197 35.0
Actinidia33989 Actinidia chinensis HOM05D004548 ORTHO05D005402 6.1e-11 72.0 186 33.9
MELO3C014757.2 Cucumis melo HOM05D004039 ORTHO05D004573 1.4e-10 70.9 195 33.8
Zm00001eb318100 Zea mays HOM05D015480 ORTHO05D019326 1.4e-10 70.9 192 30.7
SEGI_35194 Sequoiadendron giganteum HOM05D004039 ORTHO05D004573 3.0e-10 69.7 206 33.0
Ah.02g128730 Amaranthus hybridus HOM05D029470 ORTHO05D026515 3.9e-10 69.3 204 32.8
CsaV3_3G020070 Cucumis sativus L. HOM05D004039 ORTHO05D004573 1.1e-09 67.8 195 33.8
EL10Ac6g13908 Beta vulgaris HOM05D029470 ORTHO05D026515 7.4e-09 65.1 211 31.8
THA.LOC104823341 Tarenaya hassleriana HOM05D004039 ORTHO05D004573 1.1e-07 61.2 198 33.3
ClCG05G012460 Citrullus lanatus HOM05D004039 ORTHO05D004573 5.3e-07 58.9 192 31.8
Os09g0511300 Oryza sativa ssp. japonica HOM05D015480 ORTHO05D019326 1.2e-06 57.8 185 28.1
CDE07G0150 Ceratophyllum demersum HOM05D004039 ORTHO05D004573 1.5e-06 57.4 116 31.9


User provided reference genes

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