Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.014G138200 Populus trichocarpa HOM05D004053 ORTHO05D005065 1.6e-233 812.4 420 100.0
Sabra14G0104300 Salix brachista HOM05D004053 ORTHO05D005065 4.1e-184 648.3 448 78.1
Potri.002G215800 Populus trichocarpa HOM05D004053 ORTHO05D005065 4.0e-179 631.7 419 78.3
Manes.01G210500 Manihot esculenta HOM05D004053 ORTHO05D005065 1.2e-151 540.4 420 65.5
QL12p022856 Quercus lobata HOM05D004053 ORTHO05D005065 1.1e-141 507.3 424 63.0
Haze_04757 Corylus avellana HOM05D004053 ORTHO05D005065 7.4e-133 478.0 424 59.0
Atru.chr5.1352 Acer truncatum HOM05D004053 ORTHO05D005065 2.0e-130 469.9 419 60.9
Duzib133G0805 Durio zibethinus HOM05D004053 ORTHO05D005065 4.5e-130 468.8 425 59.5
Ciclev10020315m.g Citrus clementina HOM05D004053 ORTHO05D005065 5.8e-130 468.4 425 59.5
Cfa006097 Carpinus fangiana HOM05D004053 ORTHO05D005065 1.1e-128 464.2 424 58.3
TAR362G1031 Trochodendron aralioides HOM05D004053 ORTHO05D005065 3.2e-128 462.6 441 57.4
Thecc.01G284500 Theobroma cacao HOM05D004053 ORTHO05D005065 5.5e-128 461.8 425 58.4
Duzib138G0912 Durio zibethinus HOM05D004053 ORTHO05D005065 3.9e-126 455.7 426 58.9
Cpa.g.sc9.119 Carica papaya HOM05D004053 ORTHO05D005065 5.6e-125 451.8 437 57.4
GSVIVG01011074001 Vitis vinifera HOM05D004053 ORTHO05D005065 7.4e-125 451.4 438 59.6
CANSAT25G0924 Cannabis sativa HOM05D004053 ORTHO05D005065 3.4e-122 442.6 423 55.6
CSS0023044 Camellia sinensis var. sinensis HOM05D004053 ORTHO05D005065 7.9e-119 431.4 427 54.1
CiPaw.07G095100 Carya illinoinensis HOM05D004053 ORTHO05D005065 4.3e-117 425.6 423 53.9
Prupe.8G245900 Prunus persica HOM05D004053 ORTHO05D005065 2.4e-115 419.9 424 54.7
Nn4g26160 Nelumbo nucifera HOM05D004053 ORTHO05D005065 3.4e-114 416.0 443 52.6
Rhsim13G0022200 Rhododendron simsii HOM05D004053 ORTHO05D005065 3.4e-114 416.0 431 53.6
Actinidia24316 Actinidia chinensis HOM05D004053 ORTHO05D005065 1.2e-111 407.5 422 52.1
vmacro02546 Vaccinium macrocarpon HOM05D004053 ORTHO05D005065 2.7e-111 406.4 433 52.7
Gohir.D12G005800 Gossypium hirsutum HOM05D004053 ORTHO05D005065 4.6e-111 405.6 427 54.1
Gorai.008G005800 Gossypium raimondii HOM05D004053 ORTHO05D005065 5.1e-110 402.1 427 53.9
TWI14G1274 Tripterygium wilfordii HOM05D004053 ORTHO05D005065 2.5e-109 399.8 428 52.3
Gohir.A12G006400 Gossypium hirsutum HOM05D004053 ORTHO05D005065 3.3e-109 399.4 427 53.4
Gorai.007G133800 Gossypium raimondii HOM05D004053 ORTHO05D005065 5.7e-109 398.7 424 52.6
Gohir.D11G124800 Gossypium hirsutum HOM05D004053 ORTHO05D005065 2.8e-108 396.4 424 52.4
Dinv11260 Davidia involucrata HOM05D004053 ORTHO05D005065 1.1e-107 394.4 362 59.1
MD11G1290800 Malus domestica HOM05D004053 ORTHO05D005065 1.1e-107 394.4 423 53.2
Lj1C43T4 Lonicera japonica HOM05D004053 ORTHO05D005065 3.4e-106 389.4 437 52.2
RcHm_v2.0_Chr6g0291821 Rosa chinensis HOM05D004053 ORTHO05D005065 5.9e-106 388.7 424 53.1
FAN24G1933 Fragaria x ananassa HOM05D004053 ORTHO05D005065 1.6e-103 380.6 424 52.4
FvH4_2g24050 Fragaria vesca HOM05D004053 ORTHO05D005065 2.7e-103 379.8 424 52.4
FAN20G0349 Fragaria x ananassa HOM05D004053 ORTHO05D005065 7.9e-103 378.3 424 52.4
PGR044G2575 Punica granatum HOM05D004053 ORTHO05D005065 1.1e-101 374.4 428 52.3
MD03G1269800 Malus domestica HOM05D004053 ORTHO05D005065 1.5e-101 374.0 424 51.7
FAN15G3549 Fragaria x ananassa HOM05D004053 ORTHO05D005065 2.0e-101 373.6 424 51.9
Duzib211G0472 Durio zibethinus HOM05D004053 ORTHO05D005065 4.8e-100 369.0 349 58.5
Hma1.2p1_0257F.1_g103830 Hydrangea macrophylla HOM05D004053 ORTHO05D005065 8.2e-100 368.2 397 51.6
Glyma.02G149700 Glycine max HOM05D004053 ORTHO05D005065 1.4e-99 367.5 426 50.5
FAN27G0975 Fragaria x ananassa HOM05D004053 ORTHO05D005065 2.4e-99 366.7 424 51.2
Gohir.A11G120100 Gossypium hirsutum HOM05D004053 ORTHO05D005065 1.0e-97 361.3 424 49.5
Eucgr.K03405 Eucalyptus grandis HOM05D004053 ORTHO05D005065 5.0e-97 359.0 424 49.3
Glyma.10G024200 Glycine max HOM05D004053 ORTHO05D005065 5.0e-97 359.0 426 49.3
Medtr1g089980 Medicago truncatula HOM05D004053 ORTHO05D005065 3.2e-96 356.3 424 48.3
MELO3C014420.2 Cucumis melo HOM05D004053 ORTHO05D005065 7.2e-96 355.1 426 47.2
Lalb_Chr21g0306591 Lupinus albus HOM05D004053 ORTHO05D005065 3.6e-95 352.8 409 47.2
PSO832G4321 Papaver somniferum HOM05D004053 ORTHO05D005065 6.1e-95 352.1 442 46.6
Psat6g168840 Pisum sativum HOM05D004053 ORTHO05D005065 1.0e-94 351.3 423 46.6
ClCG07G000110 Citrullus lanatus HOM05D004053 ORTHO05D005065 5.2e-94 349.0 429 46.4
Glyma.19G153300 Glycine max HOM05D004053 ORTHO05D005065 5.2e-94 349.0 425 48.2
Ca_10403_v3 Cicer arietinum L. HOM05D004053 ORTHO05D005065 4.4e-93 345.9 422 47.4
CsaV3_6G036930 Cucumis sativus L. HOM05D004053 ORTHO05D005065 4.4e-93 345.9 426 46.0
Glyma.03G150700 Glycine max HOM05D004053 ORTHO05D005065 9.7e-93 344.7 425 48.2
Aqoxy5G00541 Aquilegia oxysepala HOM05D004053 ORTHO05D005065 2.8e-92 343.2 431 46.4
Nitab4.5_0008204g0020 Nicotiana tabacum HOM05D004053 ORTHO05D005065 2.8e-92 343.2 440 44.8
Ca_08561_v3 Cicer arietinum L. HOM05D004053 ORTHO05D005065 4.8e-92 342.4 428 47.9
Ca_08595_v3 Cicer arietinum L. HOM05D004053 ORTHO05D005065 4.8e-92 342.4 428 47.9
Lj1g0006875 Lotus japonicus HOM05D004053 ORTHO05D005065 1.4e-91 340.9 437 47.1
ECA248G2902 Erigeron canadensis HOM05D004053 ORTHO05D005065 7.0e-91 338.6 424 47.9
Lj5g0001920 Lotus japonicus HOM05D004053 ORTHO05D005065 1.6e-90 337.4 427 46.4
Phvul.001G148300 Phaseolus vulgaris HOM05D004053 ORTHO05D005065 4.5e-90 335.9 424 46.5
CiPaw.08G102900 Carya illinoinensis HOM05D004053 ORTHO05D005065 2.9e-89 333.2 331 55.0
VMungo0720G1290 Vigna mungo HOM05D004053 ORTHO05D005065 3.8e-89 332.8 428 47.0
Oeu011173.1 Olea europaea HOM05D004053 ORTHO05D005065 1.1e-88 331.3 438 44.3
Nn1g02136 Nelumbo nucifera HOM05D004053 ORTHO05D005065 2.5e-88 330.1 405 48.6
Phvul.007G169200 Phaseolus vulgaris HOM05D004053 ORTHO05D005065 4.2e-88 329.3 426 47.2
arahy.Tifrunner.gnm1.ann1.V8R19R Arachis hypogaea HOM05D004053 ORTHO05D005065 9.4e-88 328.2 426 47.2
Medtr7g094470 Medicago truncatula HOM05D004053 ORTHO05D005065 1.4e-86 324.3 422 45.3
Nitab4.5_0001323g0010 Nicotiana tabacum HOM05D004053 ORTHO05D005065 3.0e-86 323.2 452 42.9
Aqoxy2G03230 Aquilegia oxysepala HOM05D004053 ORTHO05D005065 4.0e-86 322.8 444 45.3
Lalb_Chr06g0163121 Lupinus albus HOM05D004053 ORTHO05D005065 8.8e-86 321.6 395 46.8
arahy.Tifrunner.gnm1.ann1.K8THJN Arachis hypogaea HOM05D004053 ORTHO05D005065 1.2e-85 321.2 433 46.4
DCAR_005821 Daucus carota HOM05D004053 ORTHO05D005065 4.4e-85 319.3 441 44.0
Solyc09g072990.3 Solanum lycopersicum HOM05D004053 ORTHO05D005065 4.4e-85 319.3 437 42.6
PGSC0003DMG400003799 Solanum tuberosum HOM05D004053 ORTHO05D005065 4.4e-85 319.3 439 42.4
Cc01_g19820 Coffea canephora HOM05D004053 ORTHO05D005065 7.5e-85 318.5 442 45.0
Sopen09g028800 Solanum pennellii HOM05D004053 ORTHO05D005065 2.2e-84 317.0 439 42.4
Peaxi162Scf00777g00211 Petunia axillaris HOM05D004053 ORTHO05D005065 3.7e-84 316.2 439 43.5
TPR.G32826 Trifolium pratense HOM05D004053 ORTHO05D005065 7.0e-83 312.0 423 43.5
THA.LOC104801216 Tarenaya hassleriana HOM05D004053 ORTHO05D005065 2.0e-82 310.5 427 43.8
MSTRG.21579 Avicennia marina HOM05D004053 ORTHO05D005065 2.7e-82 310.1 437 42.8
Migut.D00258 Erythranthe guttata HOM05D004053 ORTHO05D005065 2.7e-82 310.1 423 44.2
HanXRQChr02g0046661 Helianthus annuus HOM05D004053 ORTHO05D005065 7.7e-82 308.5 426 43.7
Psat3g065760 Pisum sativum HOM05D004053 ORTHO05D005065 2.2e-81 307.0 425 42.4
HanXRQChr01g0002441 Helianthus annuus HOM05D004053 ORTHO05D005065 2.9e-81 306.6 429 45.2
Sp6g02950 Schrenkiella parvula HOM05D004053 ORTHO05D005065 2.9e-81 306.6 427 42.6
Thhalv10028686m.g Eutrema salsugineum HOM05D004053 ORTHO05D005065 7.2e-80 302.0 427 42.9
Sed0017907 Sechium edule HOM05D004053 ORTHO05D005065 1.2e-79 301.2 481 39.7
C03p37430 Brassica napus HOM05D004053 ORTHO05D005065 8.8e-78 295.0 428 41.8
CARHR251290 Cardamine hirsuta HOM05D004053 ORTHO05D005065 1.2e-77 294.7 428 42.3
Actinidia00729 Actinidia chinensis HOM05D004053 ORTHO05D005065 2.6e-77 293.5 323 52.0
BolC3t16035H Brassica oleracea HOM05D004053 ORTHO05D005065 2.6e-77 293.5 428 41.6
BraA03t12252Z Brassica rapa HOM05D004053 ORTHO05D005065 3.4e-77 293.1 427 41.9
THA.LOC104815946 Tarenaya hassleriana HOM05D004053 ORTHO05D005065 4.4e-77 292.7 423 43.0
AT4G02920 Arabidopsis thaliana HOM05D004053 ORTHO05D005065 1.7e-76 290.8 427 42.6
Lsat_1_v5_gn_5_187500 Lactuca sativa HOM05D004053 ORTHO05D005065 1.7e-76 290.8 440 44.5
A03p30730 Brassica napus HOM05D004053 ORTHO05D005065 6.3e-76 288.9 425 41.9
Lj2A1179G44 Lonicera japonica HOM05D004053 ORTHO05D005065 8.3e-76 288.5 351 48.1
VMungo1383G0556 Vigna mungo HOM05D004053 ORTHO05D005065 7.0e-75 285.4 421 41.6
PSO675G9209 Papaver somniferum HOM05D004053 ORTHO05D005065 1.2e-74 284.6 450 43.1
EL10Ac7g17207 Beta vulgaris HOM05D004053 ORTHO05D005065 1.3e-73 281.2 439 43.1
DCAR_012450 Daucus carota HOM05D004053 ORTHO05D005065 2.3e-73 280.4 442 40.0
Aa31LG5G2500 Aethionema arabicum HOM05D004053 ORTHO05D005065 4.2e-72 276.2 423 38.5
AL6G50010 Arabidopsis lyrata HOM05D004053 ORTHO05D005065 2.8e-71 273.5 426 40.4
PSO541G4889 Papaver somniferum HOM05D004053 ORTHO05D005065 4.0e-70 269.6 450 41.1
SGA_v2.0_scaffold1G00444 Striga asiatica HOM05D004053 ORTHO05D005065 2.6e-69 266.9 431 40.4
arahy.Tifrunner.gnm1.ann1.U9BU7H Arachis hypogaea HOM05D004053 ORTHO05D005065 1.7e-68 264.2 418 41.1
Sc05g0005080 Simmondsia chinensis HOM05D004053 ORTHO05D005065 1.7e-68 264.2 430 40.2
Carub.0006s3417 Capsella rubella HOM05D004053 ORTHO05D005065 2.2e-68 263.8 426 39.9
BcaB01g02487 Brassica carinata HOM05D004053 ORTHO05D005065 7.3e-64 248.8 427 37.5
AL1G12850 Arabidopsis lyrata HOM05D004053 ORTHO05D005065 3.0e-62 243.4 415 38.3
AT1G03340 Arabidopsis thaliana HOM05D004053 ORTHO05D005065 3.0e-62 243.4 416 38.7
Carub.0001s0245 Capsella rubella HOM05D004053 ORTHO05D005065 2.0e-61 240.7 419 39.6
TPR.G13395 Trifolium pratense HOM05D004053 ORTHO05D005065 1.1e-59 235.0 337 42.4
MBI17_g34956_MAGBIO Magnolia biondii HOM05D004053 ORTHO05D005065 1.2e-58 231.5 295 48.1
SalBow6G4695 Salvia bowleyana HOM05D004053 ORTHO05D005065 2.0e-58 230.7 430 35.8
Thhalv10007898m.g Eutrema salsugineum HOM05D004053 ORTHO05D005065 1.3e-57 228.0 416 37.5
Zm00001eb417790 Zea mays HOM05D004053 ORTHO05D005065 1.1e-56 224.9 354 39.5
Sp1g02330 Schrenkiella parvula HOM05D004053 ORTHO05D005065 1.5e-56 224.6 417 36.0
CDE05G2296 Ceratophyllum demersum HOM05D004053 ORTHO05D005065 3.1e-54 216.9 277 45.1
CDE11G0853 Ceratophyllum demersum HOM05D004053 ORTHO05D005065 5.2e-54 216.1 275 44.4
AUR62033710 Chenopodium quinoa HOM05D004053 ORTHO05D005065 9.8e-53 211.8 416 36.1
AUR62036816 Chenopodium quinoa HOM05D004053 ORTHO05D005065 9.8e-53 211.8 416 36.5
Os05g0143300 Oryza sativa ssp. japonica HOM05D004053 ORTHO05D005065 1.1e-51 208.4 369 37.1
Oeu041712.1 Olea europaea HOM05D004053 ORTHO05D005065 3.0e-49 200.3 173 60.1
BraA10t42462Z Brassica rapa HOM05D004053 ORTHO05D005065 3.6e-47 193.4 419 35.1
ATR0665G655 Amborella trichopoda HOM05D004053 ORTHO05D005065 2.0e-45 187.6 440 33.0
arahy.Tifrunner.gnm1.ann1.F0KDF8 Arachis hypogaea HOM05D004053 ORTHO05D005065 6.4e-36 156.0 223 43.0
BcaC01g06723 Brassica carinata HOM05D004053 ORTHO05D005065 7.1e-35 152.5 163 49.7
BcaC05g24539 Brassica carinata HOM05D004053 ORTHO05D005065 5.3e-30 136.3 193 42.5
A10p01890 Brassica napus HOM05D004053 ORTHO05D005065 2.6e-29 134.0 211 39.8
unitig_8.g3318 Utricularia gibba HOM05D004053 ORTHO05D005065 1.4e-27 128.3 408 29.9
C02p39720 Brassica napus HOM05D004053 ORTHO05D005065 1.1e-24 118.6 146 46.6
BolC2t09985H Brassica oleracea HOM05D004053 ORTHO05D005065 1.5e-24 118.2 146 46.6
A02p25050 Brassica napus HOM05D004053 ORTHO05D005065 3.3e-24 117.1 146 45.9
BraA02t07493Z Brassica rapa HOM05D004053 ORTHO05D005065 3.3e-24 117.1 146 45.9
BcaC03g16190 Brassica carinata HOM05D004053 ORTHO05D005065 3.6e-23 113.6 139 46.0
SEGI_15237 Sequoiadendron giganteum HOM05D004053 ORTHO05D005065 8.1e-23 112.5 391 27.4
Psat1g163200 Pisum sativum HOM05D000871 ORTHO05D008698 6.0e-18 96.3 189 34.4
RcHm_v2.0_Chr6g0291831 Rosa chinensis HOM05D004053 ORTHO05D005065 3.0e-17 94.0 83 57.8
Hma1.2p1_4080F.1_g338240 Hydrangea macrophylla HOM05D004053 ORTHO05D005065 3.9e-17 93.6 128 45.3
VMungo0540G1158 Vigna mungo HOM05D004053 ORTHO05D005065 1.9e-16 91.3 111 46.8
arahy.Tifrunner.gnm1.ann1.LMB138 Arachis hypogaea HOM05D004053 ORTHO05D005065 6.4e-12 76.3 65 63.1
arahy.Tifrunner.gnm1.ann1.HAWP0L Arachis hypogaea HOM05D019977 ORTHO05D005065 6.7e-09 66.2 177 31.6
BcaB04g19084 Brassica carinata HOM05D004053 ORTHO05D005065 2.5e-08 64.3 62 45.2
Eucgr.H01039 Eucalyptus grandis HOM05D005016 ORTHO05D005740 3.3e-08 63.9 54 57.4
Eucgr.H03488 Eucalyptus grandis HOM05D005016 ORTHO05D005740 3.3e-08 63.9 54 57.4
C08p10690 Brassica napus HOM05D004053 ORTHO05D031745 5.6e-08 63.2 70 45.7
BolC8t48741H Brassica oleracea HOM05D004053 ORTHO05D031745 5.6e-08 63.2 70 45.7
unitig_22.g6690 Utricularia gibba HOM05D004053 ORTHO05D005065 7.4e-08 62.8 271 26.2
BcaC01g06721 Brassica carinata HOM05D004053 ORTHO05D005065 9.6e-08 62.4 71 42.3
arahy.Tifrunner.gnm1.ann1.59R5K9 Arachis hypogaea HOM05D004053 ORTHO05D005065 2.1e-07 61.2 93 41.9
BcaB06g27908 Brassica carinata HOM05D000021 ORTHO05D000010 3.7e-07 60.5 130 31.5
CARHR002650 Cardamine hirsuta HOM05D004053 ORTHO05D005065 3.7e-07 60.5 80 38.8
Hma1.2p1_0377F.1_g139390 Hydrangea macrophylla HOM05D004053 ORTHO05D005065 1.1e-06 58.9 48 54.2
BcaC02g12834 Brassica carinata HOM05D004053 ORTHO05D005065 3.1e-06 57.4 67 44.8
C04p39350 Brassica napus HOM05D004053 ORTHO05D005065 3.1e-06 57.4 67 44.8
BolC4t25502H Brassica oleracea HOM05D004053 ORTHO05D005065 3.1e-06 57.4 67 44.8


User provided reference genes

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