Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.014G130000 Populus trichocarpa HOM05D005645 ORTHO05D007156 1.2e-205 719.5 335 100.0
Sabra14G0096600 Salix brachista HOM05D005645 ORTHO05D007156 1.9e-184 649.0 332 90.1
Potri.002G205150 Populus trichocarpa HOM05D005645 ORTHO05D007156 1.2e-162 576.6 335 82.1
Sabra02G0154200 Salix brachista HOM05D005645 ORTHO05D007156 2.4e-155 552.4 336 79.2
Manes.05G062500 Manihot esculenta HOM05D005645 ORTHO05D007156 5.0e-140 501.5 340 72.9
Dinv19699 Davidia involucrata HOM05D005645 ORTHO05D007156 1.6e-135 486.5 346 67.9
Atru.chr5.1154 Acer truncatum HOM05D005645 ORTHO05D007156 2.2e-135 486.1 332 69.9
Ciclev10021114m.g Citrus clementina HOM05D005645 ORTHO05D007156 4.1e-134 481.9 334 70.1
CSS0005125 Camellia sinensis var. sinensis HOM05D005645 ORTHO05D007156 5.3e-134 481.5 336 68.5
TAR365G0052 Trochodendron aralioides HOM05D005645 ORTHO05D007156 6.9e-134 481.1 333 69.1
Hma1.2p1_0491F.1_g164480 Hydrangea macrophylla HOM05D005645 ORTHO05D007156 1.3e-132 476.9 355 67.3
Lj2P1193T28 Lonicera japonica HOM05D005645 ORTHO05D007156 8.5e-132 474.2 336 68.8
CiPaw.08G095700 Carya illinoinensis HOM05D005645 ORTHO05D007156 4.6e-130 468.4 338 68.0
MBI19_g25350_MAGBIO Magnolia biondii HOM05D005645 ORTHO05D007156 1.0e-129 467.2 341 64.5
PGR119G1100 Punica granatum HOM05D005645 ORTHO05D007156 3.3e-128 462.2 339 67.8
Duzib138G1290 Durio zibethinus HOM05D005645 ORTHO05D007156 7.4e-128 461.1 340 67.9
Rhsim01G0284600 Rhododendron simsii HOM05D005645 ORTHO05D007156 7.4e-128 461.1 345 66.4
Cc01_g20770 Coffea canephora HOM05D005645 ORTHO05D007156 1.8e-126 456.4 336 66.7
Duzib133G0671 Durio zibethinus HOM05D005645 ORTHO05D007156 3.1e-126 455.7 351 64.7
DCAR_002826 Daucus carota HOM05D005645 ORTHO05D007156 1.2e-125 453.8 338 64.8
Thecc.01G299500 Theobroma cacao HOM05D005645 ORTHO05D007156 1.5e-125 453.4 344 65.1
Lsat_1_v5_gn_8_53521 Lactuca sativa HOM05D005645 ORTHO05D007156 2.0e-125 453.0 342 65.8
Gohir.D08G085100 Gossypium hirsutum HOM05D005645 ORTHO05D007156 3.4e-125 452.2 340 65.3
COL.COLO4_23354 Corchorus olitorius HOM05D005645 ORTHO05D007156 4.5e-125 451.8 335 66.3
Nn4g25798 Nelumbo nucifera HOM05D005645 ORTHO05D007156 1.0e-124 450.7 342 64.3
TWI23G0499 Tripterygium wilfordii HOM05D005645 ORTHO05D007156 1.0e-124 450.7 339 64.0
Cfa005921 Carpinus fangiana HOM05D005645 ORTHO05D007156 1.3e-124 450.3 346 64.7
Eucgr.H01116 Eucalyptus grandis HOM05D005645 ORTHO05D007156 2.2e-124 449.5 345 65.2
Aqoxy2G02954 Aquilegia oxysepala HOM05D005645 ORTHO05D007156 5.0e-124 448.4 337 63.8
Gohir.A08G075600 Gossypium hirsutum HOM05D005645 ORTHO05D007156 8.5e-124 447.6 340 65.0
Dinv33051 Davidia involucrata HOM05D005645 ORTHO05D007156 1.4e-123 446.8 322 67.4
Gorai.004G089600 Gossypium raimondii HOM05D005645 ORTHO05D007156 1.4e-123 446.8 340 64.7
HanXRQChr04g0118021 Helianthus annuus HOM05D005645 ORTHO05D007156 1.9e-123 446.4 345 63.8
MD03G1287400 Malus domestica HOM05D005645 ORTHO05D007156 1.9e-123 446.4 345 65.2
Cpa.g.c27813 Carica papaya HOM05D005645 ORTHO05D007156 3.2e-123 445.7 332 65.1
QL12p028562 Quercus lobata HOM05D005645 ORTHO05D007156 3.2e-123 445.7 345 63.5
Sopen09g029900 Solanum pennellii HOM05D005645 ORTHO05D007156 9.4e-123 444.1 331 65.9
Actinidia21051 Actinidia chinensis HOM05D005645 ORTHO05D007156 1.2e-122 443.7 316 67.4
TAR370G0004 Trochodendron aralioides HOM05D005645 ORTHO05D007156 1.6e-122 443.4 339 63.7
Duzib211G0390 Durio zibethinus HOM05D005645 ORTHO05D007156 3.6e-122 442.2 340 63.8
Solyc09g075080.3 Solanum lycopersicum HOM05D005645 ORTHO05D007156 7.9e-122 441.0 336 64.3
Lsat_1_v5_gn_5_191140 Lactuca sativa HOM05D005645 ORTHO05D007156 1.8e-121 439.9 349 60.5
ClCG10G010870 Citrullus lanatus HOM05D005645 ORTHO05D007156 2.3e-121 439.5 336 65.5
CANSAT25G0541 Cannabis sativa HOM05D005645 ORTHO05D007156 1.5e-120 436.8 337 64.4
RcHm_v2.0_Chr6g0293871 Rosa chinensis HOM05D005645 ORTHO05D007156 1.5e-120 436.8 332 62.7
CiPaw.07G108000 Carya illinoinensis HOM05D005645 ORTHO05D007156 4.4e-120 435.3 344 63.7
PGSC0003DMG400011401 Solanum tuberosum HOM05D005645 ORTHO05D007156 4.4e-120 435.3 337 63.8
Gohir.A12G130800 Gossypium hirsutum HOM05D005645 ORTHO05D007156 1.7e-119 433.3 341 63.9
CsaV3_4G000750 Cucumis sativus L. HOM05D005645 ORTHO05D007156 2.8e-119 432.6 343 63.0
Migut.D00211 Erythranthe guttata HOM05D005645 ORTHO05D007156 2.8e-119 432.6 334 63.5
ECA236G0211 Erigeron canadensis HOM05D005645 ORTHO05D007156 4.8e-119 431.8 340 62.1
MD11G1310800 Malus domestica HOM05D005645 ORTHO05D007156 6.3e-119 431.4 345 63.5
Peaxi162Scf00001g00452 Petunia axillaris HOM05D005645 ORTHO05D007156 6.3e-119 431.4 341 62.2
THA.LOC109115977 Tarenaya hassleriana HOM05D005645 ORTHO05D007156 6.3e-119 431.4 345 63.5
Gorai.008G145600 Gossypium raimondii HOM05D005645 ORTHO05D007156 8.2e-119 431.0 341 63.3
Nitab4.5_0001879g0020 Nicotiana tabacum HOM05D005645 ORTHO05D007156 3.1e-118 429.1 340 62.4
CAN.G1628.1 Capsicum annuum HOM05D005645 ORTHO05D007156 4.1e-118 428.7 341 62.8
Sed0014780 Sechium edule HOM05D005645 ORTHO05D007156 4.1e-118 428.7 332 64.2
Prupe.8G260500 Prunus persica HOM05D005645 ORTHO05D007156 2.6e-117 426.0 336 63.4
SalBow3G0280 Salvia bowleyana HOM05D005645 ORTHO05D007156 5.9e-117 424.9 335 60.3
SGA_v2.0_scaffold1G00372 Striga asiatica HOM05D005645 ORTHO05D007156 6.5e-116 421.4 332 60.8
AT4G02440 Arabidopsis thaliana HOM05D005645 ORTHO05D007156 1.5e-115 420.2 345 60.0
Sc09g0004020 Simmondsia chinensis HOM05D005645 ORTHO05D007156 2.5e-115 419.5 331 62.5
Sp6g02350 Schrenkiella parvula HOM05D005645 ORTHO05D007156 7.2e-115 417.9 347 60.5
Carub.0006s3469 Capsella rubella HOM05D005645 ORTHO05D007156 6.1e-114 414.8 333 61.9
Sed0022873 Sechium edule HOM05D005645 ORTHO05D007156 1.8e-113 413.3 329 61.7
EL10Ac7g17501 Beta vulgaris HOM05D005645 ORTHO05D007156 3.0e-113 412.5 345 60.3
PSO210G7211 Papaver somniferum HOM05D005645 ORTHO05D007156 4.0e-113 412.1 345 60.6
Aa31LG5G2090 Aethionema arabicum HOM05D005645 ORTHO05D007156 5.2e-113 411.8 345 58.8
PSO170G2082 Papaver somniferum HOM05D005645 ORTHO05D007156 1.5e-112 410.2 348 59.8
SGA_v2.0_scaffold2G01399 Striga asiatica HOM05D005645 ORTHO05D007156 9.7e-112 407.5 339 58.4
AL6G50630 Arabidopsis lyrata HOM05D005645 ORTHO05D007156 1.7e-111 406.8 339 60.2
HPP92_025206 Vanilla planifolia HOM05D005645 ORTHO05D007156 5.9e-109 398.3 337 57.3
CSS0029794 Camellia sinensis var. sinensis HOM05D005645 ORTHO05D007156 1.3e-108 397.1 319 62.4
FvH4_2g25611 Fragaria vesca HOM05D005645 ORTHO05D007156 1.5e-107 393.7 329 58.4
CARHR250710 Cardamine hirsuta HOM05D005645 ORTHO05D007156 4.2e-107 392.1 346 57.8
AUR62008638 Chenopodium quinoa HOM05D005645 ORTHO05D007156 5.5e-107 391.7 372 55.4
BcaB01g02041 Brassica carinata HOM05D005645 ORTHO05D007156 7.2e-107 391.3 373 55.0
arahy.Tifrunner.gnm1.ann1.LF73V2 Arachis hypogaea HOM05D005645 ORTHO05D007156 3.6e-106 389.0 331 57.7
FAN27G1772 Fragaria x ananassa HOM05D005645 ORTHO05D007156 4.7e-106 388.7 329 58.1
VMungo1383G2661 Vigna mungo HOM05D005645 ORTHO05D007156 4.7e-106 388.7 329 57.8
FAN24G3399 Fragaria x ananassa HOM05D003469 ORTHO05D004084 8.0e-106 387.9 325 58.2
Lj1g0011611 Lotus japonicus HOM05D005645 ORTHO05D007156 2.3e-105 386.3 329 55.9
ATR0796G303 Amborella trichopoda HOM05D005645 ORTHO05D007156 3.4e-104 382.5 429 49.4
AUR62033135 Chenopodium quinoa HOM05D005645 ORTHO05D007156 3.4e-104 382.5 366 55.2
CDE11G0431 Ceratophyllum demersum HOM05D005645 ORTHO05D007156 1.8e-102 376.7 295 64.1
Nitab4.5_0008207g0010 Nicotiana tabacum HOM05D005645 ORTHO05D007156 7.0e-102 374.8 305 62.0
Migut.N01502 Erythranthe guttata HOM05D005645 ORTHO05D007156 5.9e-101 371.7 330 54.5
Phvul.001G207000 Phaseolus vulgaris HOM05D005645 ORTHO05D007156 7.7e-101 371.3 341 54.3
GSVIVG01028000001 Vitis vinifera HOM05D005645 ORTHO05D007156 1.0e-100 370.9 332 55.4
Actinidia24827 Actinidia chinensis HOM05D005645 ORTHO05D007156 3.8e-100 369.0 277 65.0
Glyma.03G214300 Glycine max HOM05D005645 ORTHO05D007156 5.0e-100 368.6 340 55.0
C09p01980 Brassica napus HOM05D005645 ORTHO05D007156 1.9e-99 366.7 398 50.0
BcaNung04054 Brassica carinata HOM05D005645 ORTHO05D007156 3.0e-97 359.4 414 48.6
BraA09t35841Z Brassica rapa HOM05D005645 ORTHO05D007156 2.6e-96 356.3 401 49.4
BolC9t53130H Brassica oleracea HOM05D005645 ORTHO05D007156 7.5e-96 354.8 414 48.6
Nn3g21470 Nelumbo nucifera HOM05D005645 ORTHO05D007156 9.8e-96 354.4 303 57.8
A09p01900 Brassica napus HOM05D005645 ORTHO05D007156 1.2e-93 347.4 422 46.7
Lalb_Chr18g0047021 Lupinus albus HOM05D005645 ORTHO05D007156 4.5e-93 345.5 338 52.7
Oeu011455.1 Olea europaea HOM05D005645 ORTHO05D007156 1.7e-92 343.6 332 52.4
DCAR_018339 Daucus carota HOM05D005645 ORTHO05D007156 5.0e-92 342.0 336 52.7
FAN15G1997 Fragaria x ananassa HOM05D005645 ORTHO05D007156 8.6e-92 341.3 299 56.5
Ca_09155_v3 Cicer arietinum L. HOM05D005645 ORTHO05D007156 1.6e-90 337.0 327 51.7
Psat3g022200 Pisum sativum HOM05D005645 ORTHO05D007156 2.3e-89 333.2 336 52.4
Medtr7g108820 Medicago truncatula HOM05D005645 ORTHO05D007156 9.8e-88 327.8 333 52.0
Medtr8g058520 Medicago truncatula HOM05D005645 ORTHO05D007156 9.8e-88 327.8 333 52.0
TPR.G9640 Trifolium pratense HOM05D005645 ORTHO05D007156 1.1e-86 324.3 329 49.2
CAN.G339.1 Capsicum annuum HOM05D005645 ORTHO05D007156 1.6e-85 320.5 300 55.3
Mapoly0034s0045 Marchantia polymorpha HOM05D005645 ORTHO05D007156 3.6e-82 309.3 399 43.6
SEGI_05916 Sequoiadendron giganteum HOM05D005645 ORTHO05D007156 4.7e-82 308.9 490 37.8
AagrBONN_evm.TU.Sc2ySwM_228.5415 Anthoceros agrestis HOM05D005645 ORTHO05D007156 1.5e-80 303.9 426 42.0
Zm00001eb346660 Zea mays HOM05D005645 ORTHO05D007156 4.1e-78 295.8 356 45.5
SHI29059 Sapria himalayana HOM05D005645 ORTHO05D007156 5.4e-78 295.4 333 48.0
Pp3c4_3650 Physcomitrium patens HOM05D005645 ORTHO05D007156 7.0e-78 295.0 369 43.9
BcaNung05002 Brassica carinata HOM05D005645 ORTHO05D007156 2.7e-77 293.1 261 58.6
Os05g0365000 Oryza sativa ssp. japonica HOM05D005645 ORTHO05D007156 3.5e-77 292.7 336 47.0
Lalb_Chr06g0163461 Lupinus albus HOM05D005645 ORTHO05D007156 9.5e-75 284.6 333 45.9
Glyma.02G018450 Glycine max HOM05D005645 ORTHO05D007156 1.7e-71 273.9 329 44.4
VMungo0720G2164 Vigna mungo HOM05D005645 ORTHO05D007156 1.7e-71 273.9 329 43.2
MELO3C017961.2 Cucumis melo HOM05D005645 ORTHO05D007156 3.7e-71 272.7 172 75.0
Pp3c12_6520 Physcomitrium patens HOM05D005645 ORTHO05D007156 8.3e-71 271.6 420 38.1
Phvul.007G146000 Phaseolus vulgaris HOM05D005645 ORTHO05D007156 2.7e-69 266.5 329 42.9
SMO331G0040 Selaginella moellendorffii HOM05D005645 ORTHO05D007156 8.6e-68 261.5 333 42.0
HPP92_018255 Vanilla planifolia HOM05D005645 ORTHO05D007156 3.4e-64 249.6 327 41.6
Haze_04926 Corylus avellana HOM05D005645 ORTHO05D007156 4.6e-61 239.2 227 59.0
arahy.Tifrunner.gnm1.ann1.G1675E Arachis hypogaea HOM05D005645 ORTHO05D007156 6.0e-61 238.8 334 40.7
arahy.Tifrunner.gnm1.ann1.UILT17 Arachis hypogaea HOM05D005645 ORTHO05D007156 6.0e-61 238.8 334 41.3
AagrBONN_evm.TU.Sc2ySwM_117.1647 Anthoceros agrestis HOM05D005645 ORTHO05D007156 2.1e-58 230.3 414 36.2
Haze_04922 Corylus avellana HOM05D005645 ORTHO05D007156 4.4e-56 222.6 216 58.3
CDE05G1077 Ceratophyllum demersum HOM05D005645 ORTHO05D007156 4.8e-50 202.6 184 56.0
MD05G1102300 Malus domestica HOM05D005645 ORTHO05D007156 2.0e-40 170.6 98 75.5
unitig_0.g662 Utricularia gibba HOM05D005645 ORTHO05D007156 1.7e-31 141.0 158 46.8
Oeu046686.1 Olea europaea HOM05D005645 ORTHO05D007156 2.5e-22 110.5 257 29.6
MD05G1102200 Malus domestica HOM05D005645 ORTHO05D007156 3.2e-22 110.2 118 49.2
TWI59G0946 Tripterygium wilfordii HOM05D005645 ORTHO05D007156 1.2e-21 108.2 173 39.3
CARHR197880 Cardamine hirsuta HOM05D002394 ORTHO05D002508 3.7e-10 70.1 327 22.0
Aa31LG11G14140 Aethionema arabicum HOM05D002394 ORTHO05D002508 8.2e-10 68.9 326 21.5
THA.LOC104822342 Tarenaya hassleriana HOM05D002394 ORTHO05D002508 8.2e-10 68.9 326 21.5
AT5G15440 Arabidopsis thaliana HOM05D002394 ORTHO05D002508 1.4e-09 68.2 326 21.5
Carub.0006s1360 Capsella rubella HOM05D002394 ORTHO05D002508 1.4e-09 68.2 326 21.5
BcaB01g05056 Brassica carinata HOM05D002394 ORTHO05D002508 3.1e-09 67.0 326 22.1
C03p08130 Brassica napus HOM05D002394 ORTHO05D002508 3.1e-09 67.0 326 22.1
BolC3t13310H Brassica oleracea HOM05D002394 ORTHO05D002508 3.1e-09 67.0 326 22.1
ECA238G1727 Erigeron canadensis HOM05D002394 ORTHO05D002508 3.1e-09 67.0 78 41.0
Lsat_1_v5_gn_4_170261 Lactuca sativa HOM05D002394 ORTHO05D002508 3.1e-09 67.0 84 39.3
Sp6g28660 Schrenkiella parvula HOM05D002394 ORTHO05D002508 3.1e-09 67.0 328 21.6
HanXRQChr15g0488711 Helianthus annuus HOM05D002394 ORTHO05D002508 5.3e-09 66.2 84 38.1
Psat1g069520 Pisum sativum HOM05D002394 ORTHO05D002508 5.3e-09 66.2 84 36.9
TPR.G26203 Trifolium pratense HOM05D002394 ORTHO05D002508 5.3e-09 66.2 84 36.9
Atru.chr8.389 Acer truncatum HOM05D002394 ORTHO05D002508 7.0e-09 65.9 84 35.7
AL6G26290 Arabidopsis lyrata HOM05D002394 ORTHO05D002508 9.1e-09 65.5 326 20.9
PSO017G0834 Papaver somniferum HOM05D002394 ORTHO05D002508 1.2e-08 65.1 84 36.9
PSO478G3218 Papaver somniferum HOM05D002394 ORTHO05D002508 1.2e-08 65.1 84 36.9
FAN15G0862 Fragaria x ananassa HOM05D005645 ORTHO05D046604 2.0e-08 64.3 56 57.1
Medtr6g013530 Medicago truncatula HOM05D002394 ORTHO05D002508 2.0e-08 64.3 84 35.7
FAN07G2129 Fragaria x ananassa HOM05D005645 ORTHO05D046604 2.6e-08 63.9 58 58.6
Sed0005703 Sechium edule HOM05D002394 ORTHO05D002508 7.7e-08 62.4 84 34.5
HPP92_012503 Vanilla planifolia HOM05D002394 ORTHO05D002508 1.0e-07 62.0 78 34.6
A03p07140 Brassica napus HOM05D002394 ORTHO05D002508 1.3e-07 61.6 84 34.5
BraA03t10036Z Brassica rapa HOM05D002394 ORTHO05D002508 1.3e-07 61.6 84 34.5
Thhalv10014230m.g Eutrema salsugineum HOM05D002394 ORTHO05D002508 1.3e-07 61.6 84 34.5
CSS0014787 Camellia sinensis var. sinensis HOM05D002394 ORTHO05D002508 1.7e-07 61.2 84 32.1
EL10Ac2g03083 Beta vulgaris HOM05D002394 ORTHO05D002508 2.2e-07 60.8 84 32.1
CSS0044910 Camellia sinensis var. sinensis HOM05D002394 ORTHO05D002508 2.2e-07 60.8 84 32.1
Hma1.2p1_1741F.1_g300110 Hydrangea macrophylla HOM05D002394 ORTHO05D002508 2.2e-07 60.8 84 32.1
Hma1.2p1_3742F.1_g337440 Hydrangea macrophylla HOM05D002394 ORTHO05D002508 2.2e-07 60.8 84 32.1
CSS0007324 Camellia sinensis var. sinensis HOM05D002394 ORTHO05D002508 2.9e-07 60.5 84 32.1
CSS0038318 Camellia sinensis var. sinensis HOM05D002394 ORTHO05D002508 2.9e-07 60.5 84 32.1
Ah.01g015120 Amaranthus hybridus HOM05D002394 ORTHO05D002508 3.8e-07 60.1 84 32.1
Glyma.18G264200 Glycine max HOM05D002394 ORTHO05D002508 5.0e-07 59.7 122 32.8
PGR119G0593 Punica granatum HOM05D002394 ORTHO05D002508 5.0e-07 59.7 116 31.0
SMO356G0542 Selaginella moellendorffii HOM05D002394 ORTHO05D002508 8.5e-07 58.9 120 30.0
DCAR_011055 Daucus carota HOM05D002394 ORTHO05D002508 1.1e-06 58.5 84 33.3
Lj4P116T28 Lonicera japonica HOM05D002394 ORTHO05D002508 2.5e-06 57.4 78 37.2
arahy.Tifrunner.gnm1.ann1.GVJS70 Arachis hypogaea HOM05D002394 ORTHO05D002508 3.2e-06 57.0 119 32.8
Phvul.008G035700 Phaseolus vulgaris HOM05D002394 ORTHO05D002508 5.5e-06 56.2 122 32.0
VMungo1383G0104 Vigna mungo HOM05D002394 ORTHO05D002508 5.5e-06 56.2 122 32.0
Aa31LG9G16630 Aethionema arabicum HOM05D002394 ORTHO05D002508 7.2e-06 55.8 125 32.8
Glyma.08G242000 Glycine max HOM05D002394 ORTHO05D002508 7.2e-06 55.8 122 32.0
SalBow1G4045 Salvia bowleyana HOM05D002394 ORTHO05D002508 7.2e-06 55.8 84 31.0
Manes.02G051300 Manihot esculenta HOM05D002394 ORTHO05D002508 9.4e-06 55.5 119 32.8
SEGI_33966 Sequoiadendron giganteum HOM05D002394 ORTHO05D002508 9.4e-06 55.5 120 33.3


User provided reference genes

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