Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.014G124500 Populus trichocarpa HOM05D007766 ORTHO05D009733 4.1e-136 488.0 243 100.0
Sabra14G0092600 Salix brachista HOM05D007766 ORTHO05D009733 2.1e-116 422.5 243 86.0
Manes.05G001200 Manihot esculenta HOM05D007766 ORTHO05D009733 7.9e-71 271.2 246 60.2
Eucgr.H01072 Eucalyptus grandis HOM05D007766 ORTHO05D009733 7.7e-58 228.0 252 52.8
TWI36G1235 Tripterygium wilfordii HOM05D007766 ORTHO05D009733 1.7e-57 226.9 246 54.9
Haze_04998 Corylus avellana HOM05D007766 ORTHO05D009733 3.7e-52 209.1 248 51.2
PGR119G1997 Punica granatum HOM05D007766 ORTHO05D009733 8.2e-52 208.0 221 52.5
Thecc.01G308600 Theobroma cacao HOM05D007766 ORTHO05D009733 4.1e-51 205.7 249 49.4
Cpa.g.sc151.50 Carica papaya HOM05D007766 ORTHO05D009733 7.0e-51 204.9 249 48.2
CANSAT25G3789 Cannabis sativa HOM05D007766 ORTHO05D009733 4.5e-50 202.2 249 48.6
CiPaw.07G114200 Carya illinoinensis HOM05D007766 ORTHO05D009733 5.0e-49 198.7 250 49.6
Duzib138G0131 Durio zibethinus HOM05D007766 ORTHO05D009733 5.0e-49 198.7 242 49.6
AT1G02700 Arabidopsis thaliana HOM05D007766 ORTHO05D009733 6.5e-49 198.4 255 48.2
Dinv33093 Davidia involucrata HOM05D007766 ORTHO05D009733 1.5e-48 197.2 255 48.6
COL.COLO4_23278 Corchorus olitorius HOM05D007766 ORTHO05D009733 3.2e-48 196.1 252 50.0
Gohir.D12G131000 Gossypium hirsutum HOM05D007766 ORTHO05D009733 3.2e-48 196.1 250 47.2
GSVIVG01028075001 Vitis vinifera HOM05D007766 ORTHO05D009733 3.2e-48 196.1 250 48.4
AL1G12070 Arabidopsis lyrata HOM05D007766 ORTHO05D009733 4.2e-48 195.7 257 47.5
CARHR002000 Cardamine hirsuta HOM05D007766 ORTHO05D009733 1.2e-47 194.1 256 47.3
QL12p028831 Quercus lobata HOM05D007766 ORTHO05D009733 1.2e-47 194.1 287 44.3
Gorai.008G142300 Gossypium raimondii HOM05D007766 ORTHO05D009733 1.6e-47 193.7 250 46.8
vmacro02422 Vaccinium macrocarpon HOM05D007766 ORTHO05D009733 1.6e-47 193.7 253 45.8
Carub.0001s0178 Capsella rubella HOM05D007766 ORTHO05D009733 2.1e-47 193.4 255 48.2
Gohir.A12G127500 Gossypium hirsutum HOM05D007766 ORTHO05D009733 3.6e-47 192.6 249 46.6
VMungo1383G0118 Vigna mungo HOM05D007766 ORTHO05D009733 1.8e-46 190.3 242 46.3
Actinidia27601 Actinidia chinensis HOM05D007766 ORTHO05D009733 8.8e-46 188.0 243 46.5
Glyma.19G214500 Glycine max HOM05D007766 ORTHO05D009733 2.0e-45 186.8 243 47.7
RcHm_v2.0_Chr7g0241981 Rosa chinensis HOM05D007766 ORTHO05D009733 3.3e-45 186.0 258 46.9
Nitab4.5_0000803g0050 Nicotiana tabacum HOM05D007766 ORTHO05D009733 9.7e-45 184.5 258 41.9
Nitab4.5_0000116g0120 Nicotiana tabacum HOM05D007766 ORTHO05D009733 1.7e-44 183.7 253 42.7
ClCG09G005330 Citrullus lanatus HOM05D007766 ORTHO05D009733 1.1e-43 181.0 247 47.0
Phvul.001G211300 Phaseolus vulgaris HOM05D007766 ORTHO05D009733 1.4e-43 180.6 242 45.0
Cfa005851 Carpinus fangiana HOM05D007766 ORTHO05D009733 3.1e-43 179.5 253 46.6
arahy.Tifrunner.gnm1.ann1.MEA9U7 Arachis hypogaea HOM05D007766 ORTHO05D009733 4.1e-43 179.1 237 47.7
Lj1C21T2 Lonicera japonica HOM05D007766 ORTHO05D009733 4.1e-43 179.1 245 44.9
arahy.Tifrunner.gnm1.ann1.28FBJ8 Arachis hypogaea HOM05D007766 ORTHO05D009733 1.6e-42 177.2 237 45.1
Cc01_g21240 Coffea canephora HOM05D007766 ORTHO05D009733 2.6e-42 176.4 265 45.3
Peaxi162Scf00001g00292 Petunia axillaris HOM05D007766 ORTHO05D009733 4.5e-42 175.6 254 41.3
PGSC0003DMG400031827 Solanum tuberosum HOM05D007766 ORTHO05D009733 5.9e-42 175.3 247 42.9
Lalb_Chr15g0078421 Lupinus albus HOM05D007766 ORTHO05D009733 1.0e-41 174.5 148 58.8
CSS0041323 Camellia sinensis var. sinensis HOM05D007766 ORTHO05D009733 1.7e-41 173.7 269 40.5
Atru.chr5.1065 Acer truncatum HOM05D007766 ORTHO05D009733 3.8e-41 172.6 268 45.1
Sopen09g030400 Solanum pennellii HOM05D007766 ORTHO05D009733 5.0e-41 172.2 248 44.8
Rhsim13G0007300 Rhododendron simsii HOM05D007766 ORTHO05D009733 1.1e-40 171.0 174 52.9
Ca_09199_v3 Cicer arietinum L. HOM05D007766 ORTHO05D009733 1.9e-40 170.2 246 44.3
TPR.G20299 Trifolium pratense HOM05D007766 ORTHO05D009733 2.5e-40 169.9 246 43.9
FAN18G0466 Fragaria x ananassa HOM05D007766 ORTHO05D009733 3.2e-40 169.5 227 48.5
FAN18G1064 Fragaria x ananassa HOM05D007766 ORTHO05D009733 3.2e-40 169.5 227 48.5
C05p01390 Brassica napus HOM05D000768 ORTHO05D000665 4.2e-40 169.1 249 45.8
Lj1g0002879 Lotus japonicus HOM05D007766 ORTHO05D009733 4.2e-40 169.1 245 45.7
Nn3g21607 Nelumbo nucifera HOM05D007766 ORTHO05D009733 4.2e-40 169.1 256 41.4
BraA10t42417Z Brassica rapa HOM05D000768 ORTHO05D000665 5.5e-40 168.7 249 45.4
SGA_v2.0_scaffold334G49048 Striga asiatica HOM05D007766 ORTHO05D009733 5.5e-40 168.7 246 46.3
BolC5t28921H Brassica oleracea HOM05D000768 ORTHO05D000665 7.2e-40 168.3 249 45.0
CsaV3_7G029750 Cucumis sativus L. HOM05D007766 ORTHO05D009733 2.7e-39 166.4 249 43.0
FvH4_5g39680 Fragaria vesca HOM05D007766 ORTHO05D009733 2.7e-39 166.4 216 49.5
Aa31LG1G9860 Aethionema arabicum HOM05D007766 ORTHO05D009733 4.7e-39 165.6 252 42.9
Migut.D00109 Erythranthe guttata HOM05D007766 ORTHO05D009733 6.1e-39 165.2 253 41.1
Psat3g020680 Pisum sativum HOM05D007766 ORTHO05D009733 8.0e-39 164.9 245 42.4
FAN08G1563 Fragaria x ananassa HOM05D007766 ORTHO05D009733 2.3e-38 163.3 216 49.1
Medtr7g109280 Medicago truncatula HOM05D007766 ORTHO05D009733 4.0e-38 162.5 251 42.2
MELO3C015946.2 Cucumis melo HOM05D007766 ORTHO05D009733 5.2e-38 162.2 257 41.2
Thhalv10008633m.g Eutrema salsugineum HOM05D007766 ORTHO05D009733 8.8e-38 161.4 251 43.8
Prupe.8G268800 Prunus persica HOM05D007766 ORTHO05D009733 2.0e-37 160.2 272 42.6
Sc17g0002970 Simmondsia chinensis HOM05D007766 ORTHO05D009733 4.4e-37 159.1 243 42.4
MD03G1298400 Malus domestica HOM05D007766 ORTHO05D009733 5.7e-37 158.7 257 44.4
Sed0007654 Sechium edule HOM05D007766 ORTHO05D009733 3.7e-36 156.0 247 43.7
Ciclev10024028m.g Citrus clementina HOM05D007766 ORTHO05D009733 6.3e-36 155.2 150 58.0
ECA248G3735 Erigeron canadensis HOM05D007766 ORTHO05D009733 1.8e-35 153.7 163 50.9
Sp1g01680 Schrenkiella parvula HOM05D007766 ORTHO05D009733 5.3e-35 152.1 246 43.5
Lsat_1_v5_gn_5_190141 Lactuca sativa HOM05D007766 ORTHO05D009733 5.9e-34 148.7 154 50.6
Ah.15g092870 Amaranthus hybridus HOM05D007766 ORTHO05D009733 6.5e-33 145.2 159 50.9
HanXRQChr01g0000891 Helianthus annuus HOM05D007766 ORTHO05D009733 1.8e-30 137.1 162 46.3
PSO478G3523 Papaver somniferum HOM05D007766 ORTHO05D009733 2.6e-29 133.3 223 41.3
PSO782G1382 Papaver somniferum HOM05D007766 ORTHO05D009733 9.8e-29 131.3 221 39.8
EL10Ac7g17611 Beta vulgaris HOM05D007766 ORTHO05D009733 6.3e-28 128.6 220 39.1
unitig_60.g25659 Utricularia gibba HOM05D001839 ORTHO05D001867 1.6e-26 124.0 126 53.2
A10p01420 Brassica napus HOM05D000768 ORTHO05D000665 2.0e-26 123.6 215 41.9
TAR636G1646 Trochodendron aralioides HOM05D007766 ORTHO05D009733 1.0e-25 121.3 116 58.6
Aqoxy2G02831 Aquilegia oxysepala HOM05D007766 ORTHO05D009733 2.1e-23 113.6 246 35.8
MBI18_g25084_MAGBIO Magnolia biondii HOM05D007766 ORTHO05D009733 3.6e-23 112.8 152 43.4
DCAR_002867 Daucus carota HOM05D007766 ORTHO05D009733 1.4e-22 110.9 253 36.0
Solyc09g075600.3 Solanum lycopersicum HOM05D007766 ORTHO05D009733 5.0e-17 92.4 76 61.8
CDE05G0244 Ceratophyllum demersum HOM05D007766 ORTHO05D009733 2.5e-16 90.1 149 39.6
Zm00001eb330520 Zea mays HOM05D007766 ORTHO05D009733 5.2e-14 82.4 152 36.2
Medtr8g023290 Medicago truncatula HOM05D007766 ORTHO05D009733 1.0e-09 68.2 103 42.7
Actinidia21421 Actinidia chinensis HOM05D007766 ORTHO05D009733 8.6e-09 65.1 140 37.1
AUR62008743 Chenopodium quinoa HOM05D007766 ORTHO05D009733 2.5e-08 63.5 172 32.6
Os07g0675200 Oryza sativa ssp. japonica HOM05D007766 ORTHO05D009733 5.6e-08 62.4 102 39.2
Sc17g0002980 Simmondsia chinensis HOM05D007766 ORTHO05D009733 1.1e-06 58.2 66 51.5


User provided reference genes

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