Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.014G123400 Populus trichocarpa HOM05D003790 ORTHO05D004481 6.4e-105 384.0 187 100.0
Sabra14G0091700 Salix brachista HOM05D003790 ORTHO05D004481 1.2e-82 310.1 184 84.8
Potri.002G198800 Populus trichocarpa HOM05D003790 ORTHO05D004481 3.0e-78 295.4 189 82.0
Sabra02G0159000 Salix brachista HOM05D003790 ORTHO05D004481 1.2e-63 246.9 194 69.1
Manes.01G225600 Manihot esculenta HOM05D003790 ORTHO05D004481 4.4e-53 211.8 185 64.9
CiPaw.07G114900 Carya illinoinensis HOM05D003790 ORTHO05D004481 5.4e-51 204.9 196 57.1
Duzib138G1652 Durio zibethinus HOM05D003790 ORTHO05D004481 1.1e-48 197.2 200 57.0
Cfa005842 Carpinus fangiana HOM05D003790 ORTHO05D004481 1.2e-47 193.7 193 57.5
CiPaw.08G091700 Carya illinoinensis HOM05D003790 ORTHO05D004481 1.2e-47 193.7 190 58.4
Lalb_Chr02g0146651 Lupinus albus HOM05D003790 ORTHO05D004481 1.0e-46 190.7 195 54.4
Haze_05008 Corylus avellana HOM05D003790 ORTHO05D004481 1.5e-45 186.8 192 54.7
Thecc.01G310000 Theobroma cacao HOM05D003790 ORTHO05D004481 2.6e-45 186.0 197 56.9
Duzib133G0291 Durio zibethinus HOM05D003790 ORTHO05D004481 9.8e-45 184.1 195 56.4
Rhsim13G0006400 Rhododendron simsii HOM05D003790 ORTHO05D004481 9.8e-45 184.1 197 51.3
vmacro02415 Vaccinium macrocarpon HOM05D003790 ORTHO05D004481 4.9e-44 181.8 196 53.6
Sed0026960 Sechium edule HOM05D003790 ORTHO05D004481 8.3e-44 181.0 180 53.9
Gohir.A07G127400 Gossypium hirsutum HOM05D003790 ORTHO05D004481 1.2e-42 177.2 200 52.0
Gohir.D07G131700 Gossypium hirsutum HOM05D003790 ORTHO05D004481 1.6e-42 176.8 200 52.5
TPR.G7317 Trifolium pratense HOM05D003790 ORTHO05D004481 2.0e-42 176.4 199 50.8
VMungo0720G2360 Vigna mungo HOM05D003790 ORTHO05D004481 2.0e-42 176.4 189 52.9
Eucgr.H01068 Eucalyptus grandis HOM05D003790 ORTHO05D004481 3.5e-42 175.6 191 49.2
Lalb_Chr06g0166611 Lupinus albus HOM05D003790 ORTHO05D004481 3.5e-42 175.6 185 51.4
TAR633G1354 Trochodendron aralioides HOM05D003790 ORTHO05D004481 4.5e-42 175.3 199 51.8
CAN.G69.5 Capsicum annuum HOM05D003790 ORTHO05D004481 5.9e-42 174.9 183 53.6
PGSC0003DMG400037362 Solanum tuberosum HOM05D003790 ORTHO05D004481 1.7e-41 173.3 177 54.8
Gorai.001G143000 Gossypium raimondii HOM05D003790 ORTHO05D004481 2.3e-41 172.9 200 52.0
Medtr1g087710 Medicago truncatula HOM05D003790 ORTHO05D004481 2.3e-41 172.9 200 51.5
Glyma.02G014300 Glycine max HOM05D003790 ORTHO05D004481 2.9e-41 172.6 194 50.0
Sed0014571 Sechium edule HOM05D003790 ORTHO05D004481 3.8e-41 172.2 175 50.9
Actinidia21012 Actinidia chinensis HOM05D003790 ORTHO05D004481 6.6e-41 171.4 173 54.3
TAR633G0094 Trochodendron aralioides HOM05D003790 ORTHO05D004481 6.6e-41 171.4 201 50.7
Phvul.007G216200 Phaseolus vulgaris HOM05D003790 ORTHO05D004481 8.6e-41 171.0 191 52.4
Actinidia25835 Actinidia chinensis HOM05D003270 ORTHO05D003662 2.5e-40 169.5 173 54.9
Glyma.10G015000 Glycine max HOM05D003790 ORTHO05D004481 2.5e-40 169.5 196 51.0
Nitab4.5_0000116g0070 Nicotiana tabacum HOM05D003790 ORTHO05D004481 5.6e-40 168.3 197 52.8
Gohir.D11G116500 Gossypium hirsutum HOM05D003790 ORTHO05D004481 1.2e-39 167.2 190 49.5
CsaV3_7G029800 Cucumis sativus L. HOM05D003790 ORTHO05D004481 2.8e-39 166.0 181 49.2
Nitab4.5_0017359g0010 Nicotiana tabacum HOM05D003790 ORTHO05D004481 2.8e-39 166.0 196 51.5
Ca_10301_v3 Cicer arietinum L. HOM05D003790 ORTHO05D004481 4.7e-39 165.2 194 51.5
ClCG09G005270 Citrullus lanatus HOM05D003790 ORTHO05D004481 4.7e-39 165.2 184 50.5
Eucgr.L01709 Eucalyptus grandis HOM05D003790 ORTHO05D004481 8.0e-39 164.5 191 49.2
Peaxi162Scf00001g00262 Petunia axillaris HOM05D003790 ORTHO05D004481 8.0e-39 164.5 201 49.8
Eucgr.L02691 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.8e-38 163.3 196 51.5
Ciclev10022416m.g Citrus clementina HOM05D003790 ORTHO05D004481 2.3e-38 162.9 189 54.0
Gohir.A12G126700 Gossypium hirsutum HOM05D003790 ORTHO05D004481 2.3e-38 162.9 192 51.0
Eucgr.H01059 Eucalyptus grandis HOM05D003790 ORTHO05D004481 4.0e-38 162.2 186 50.0
Gorai.007G124700 Gossypium raimondii HOM05D003790 ORTHO05D004481 4.0e-38 162.2 189 48.7
CANSAT25G2552 Cannabis sativa HOM05D003790 ORTHO05D004481 5.2e-38 161.8 189 50.3
Nn3g21628 Nelumbo nucifera HOM05D003790 ORTHO05D004481 6.8e-38 161.4 198 50.0
Sopen01g031440 Solanum pennellii HOM05D003790 ORTHO05D004481 6.8e-38 161.4 177 52.0
Eucgr.E02370 Eucalyptus grandis HOM05D003790 ORTHO05D004481 8.9e-38 161.0 196 51.0
QL12p028945 Quercus lobata HOM05D003790 ORTHO05D004481 8.9e-38 161.0 185 55.7
Rhsim01G0289200 Rhododendron simsii HOM05D003790 ORTHO05D004481 8.9e-38 161.0 196 51.0
Cpa.g.sc18.4 Carica papaya HOM05D003790 ORTHO05D004481 1.2e-37 160.6 193 53.4
Aqoxy2G02808 Aquilegia oxysepala HOM05D003790 ORTHO05D004481 1.5e-37 160.2 188 47.3
Nitab4.5_0010548g0010 Nicotiana tabacum HOM05D003790 ORTHO05D004481 2.0e-37 159.8 195 51.3
Lj2P1202T13 Lonicera japonica HOM05D003790 ORTHO05D004481 2.6e-37 159.5 188 50.0
TWI36G1341 Tripterygium wilfordii HOM05D003790 ORTHO05D004481 1.7e-36 156.8 193 50.3
Peaxi162Scf00001g00263 Petunia axillaris HOM05D003790 ORTHO05D004481 2.9e-36 156.0 194 48.5
Gorai.008G141400 Gossypium raimondii HOM05D003790 ORTHO05D004481 3.7e-36 155.6 184 51.6
MELO3C015941.2 Cucumis melo HOM05D003790 ORTHO05D004481 4.9e-36 155.2 180 47.8
PGSC0003DMG400009002 Solanum tuberosum HOM05D003790 ORTHO05D004481 4.9e-36 155.2 179 50.8
PGR119G1194 Punica granatum HOM05D003790 ORTHO05D004481 1.1e-35 154.1 191 50.3
DCAR_018309 Daucus carota HOM05D003790 ORTHO05D004481 1.4e-35 153.7 185 49.7
Gohir.A11G111300 Gossypium hirsutum HOM05D003790 ORTHO05D004481 1.8e-35 153.3 189 48.1
Peaxi162Scf00001g00254 Petunia axillaris HOM05D003790 ORTHO05D004481 2.4e-35 152.9 195 48.7
PGR119G2441 Punica granatum HOM05D003790 ORTHO05D004481 4.1e-35 152.1 187 50.3
Nitab4.5_0025993g0010 Nicotiana tabacum HOM05D003790 ORTHO05D004481 7.0e-35 151.4 199 48.7
Solyc01g079660.2 Solanum lycopersicum HOM05D003790 ORTHO05D004481 9.2e-35 151.0 176 50.0
Atru.chr5.1052 Acer truncatum HOM05D003790 ORTHO05D004481 1.2e-34 150.6 184 48.4
Oeu005872.1 Olea europaea HOM05D003790 ORTHO05D004481 2.0e-34 149.8 197 45.7
PSO210G7449 Papaver somniferum HOM05D003790 ORTHO05D004481 2.7e-34 149.4 192 47.9
FAN13G3073 Fragaria x ananassa HOM05D003790 ORTHO05D004481 4.6e-34 148.7 203 45.8
AT5G38700 Arabidopsis thaliana HOM05D003790 ORTHO05D004481 5.9e-34 148.3 183 47.0
PSO761G0583 Papaver somniferum HOM05D003790 ORTHO05D004481 7.8e-34 147.9 198 47.0
Carub.0001s0174 Capsella rubella HOM05D003790 ORTHO05D004481 1.0e-33 147.5 187 48.7
FAN04G0217 Fragaria x ananassa HOM05D003790 ORTHO05D004481 1.0e-33 147.5 210 45.2
Cc08_g11830 Coffea canephora HOM05D003790 ORTHO05D004481 3.0e-33 146.0 213 47.9
RcHm_v2.0_Chr7g0241911 Rosa chinensis HOM05D003790 ORTHO05D004481 3.9e-33 145.6 200 44.5
FvH4_5g39610 Fragaria vesca HOM05D003790 ORTHO05D004481 8.6e-33 144.4 211 46.0
FAN08G1995 Fragaria x ananassa HOM05D003790 ORTHO05D004481 8.6e-33 144.4 211 46.0
FAN18G0157 Fragaria x ananassa HOM05D003790 ORTHO05D004481 8.6e-33 144.4 211 46.0
Dinv10067 Davidia involucrata HOM05D003790 ORTHO05D004481 1.1e-32 144.1 183 47.5
C05p01360 Brassica napus HOM05D003790 ORTHO05D004481 1.5e-32 143.7 182 47.3
Eucgr.H01065 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.5e-32 143.7 197 44.2
AL1G12020 Arabidopsis lyrata HOM05D003790 ORTHO05D004481 1.9e-32 143.3 174 47.7
Ah.11g049420 Amaranthus hybridus HOM05D003790 ORTHO05D004481 3.3e-32 142.5 173 49.1
Sp1g01670 Schrenkiella parvula HOM05D003790 ORTHO05D004481 7.3e-32 141.4 184 45.1
BolC5t28918H Brassica oleracea HOM05D003790 ORTHO05D004481 1.2e-31 140.6 182 47.3
Oeu005873.1 Olea europaea HOM05D003790 ORTHO05D004481 1.2e-31 140.6 178 46.6
PGR119G2399 Punica granatum HOM05D003790 ORTHO05D004481 1.6e-31 140.2 176 51.7
BcaB03g15798 Brassica carinata HOM05D003790 ORTHO05D004481 3.6e-31 139.0 181 47.0
A10p01380 Brassica napus HOM05D003790 ORTHO05D004481 3.6e-31 139.0 182 48.4
BraA10t42414Z Brassica rapa HOM05D003790 ORTHO05D004481 3.6e-31 139.0 182 48.4
Dinv33098 Davidia involucrata HOM05D003790 ORTHO05D004481 4.7e-31 138.7 204 50.0
Sopen01g031450 Solanum pennellii HOM05D003790 ORTHO05D004481 4.7e-31 138.7 181 47.0
THA.LOC104801296 Tarenaya hassleriana HOM05D003790 ORTHO05D004481 6.2e-31 138.3 186 48.9
Lj1C20T16 Lonicera japonica HOM05D003790 ORTHO05D004481 8.0e-31 137.9 179 48.6
TAR362G0521 Trochodendron aralioides HOM05D003790 ORTHO05D004481 8.0e-31 137.9 184 47.8
BcaC07g42307 Brassica carinata HOM05D003790 ORTHO05D004481 1.0e-30 137.5 181 45.3
Lj1C20T6 Lonicera japonica HOM05D003790 ORTHO05D004481 2.3e-30 136.3 181 49.2
CARHR001970 Cardamine hirsuta HOM05D003790 ORTHO05D004481 3.1e-30 136.0 183 44.3
Oeu008329.1 Olea europaea HOM05D003790 ORTHO05D004481 6.8e-30 134.8 194 45.4
Eucgr.L01710 Eucalyptus grandis HOM05D003790 ORTHO05D004481 8.9e-30 134.4 181 43.6
Solyc01g079670.2 Solanum lycopersicum HOM05D003790 ORTHO05D004481 1.5e-29 133.7 178 46.1
A09p68580 Brassica napus HOM05D003790 ORTHO05D004481 2.6e-29 132.9 181 45.3
BraA09t42201Z Brassica rapa HOM05D003790 ORTHO05D004481 2.6e-29 132.9 181 45.3
Lsat_1_v5_gn_9_541 Lactuca sativa HOM05D003790 ORTHO05D004481 3.4e-29 132.5 183 46.4
Hma1.2p1_1302F.1_g274340 Hydrangea macrophylla HOM05D003790 ORTHO05D004481 5.8e-29 131.7 185 44.3
COL.COLO4_23265 Corchorus olitorius HOM05D003790 ORTHO05D004481 1.3e-28 130.6 176 49.4
Thhalv10009571m.g Eutrema salsugineum HOM05D003790 ORTHO05D004481 1.3e-28 130.6 184 44.0
Eucgr.H01062 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.7e-28 130.2 158 48.1
Nitab4.5_0000116g0080 Nicotiana tabacum HOM05D003790 ORTHO05D004481 1.7e-28 130.2 181 43.6
BcaC07g42401 Brassica carinata HOM05D003790 ORTHO05D004481 3.7e-28 129.0 181 42.5
Sp6g02070 Schrenkiella parvula HOM05D003790 ORTHO05D004481 6.4e-28 128.3 183 42.6
Eucgr.L01711 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.1e-27 127.5 142 53.5
HanXRQChr01g0000871 Helianthus annuus HOM05D003790 ORTHO05D004481 1.1e-27 127.5 185 45.4
HanXRQChr05g0137351 Helianthus annuus HOM05D003790 ORTHO05D004481 2.4e-27 126.3 183 44.8
C08p53190 Brassica napus HOM05D003790 ORTHO05D004481 5.4e-27 125.2 184 44.6
BolC8t52834H Brassica oleracea HOM05D003790 ORTHO05D004481 5.4e-27 125.2 184 44.6
ECA248G3170 Erigeron canadensis HOM05D003790 ORTHO05D004481 7.0e-27 124.8 175 46.3
AL6G50980 Arabidopsis lyrata HOM05D003790 ORTHO05D004481 1.6e-26 123.6 179 41.9
HanXRQChr05g0137341 Helianthus annuus HOM05D003790 ORTHO05D004481 2.0e-26 123.2 188 45.2
Actinidia21418 Actinidia chinensis HOM05D003790 ORTHO05D004481 2.7e-26 122.9 284 33.5
Prupe.8G269600 Prunus persica HOM05D003790 ORTHO05D004481 3.5e-26 122.5 181 47.5
TWI75G0985 Tripterygium wilfordii HOM05D003790 ORTHO05D004481 1.0e-25 120.9 174 44.3
SGA_v2.0_scaffold198G41126 Striga asiatica HOM05D003790 ORTHO05D004481 1.3e-25 120.6 188 45.2
BolC3t16086H Brassica oleracea HOM05D003790 ORTHO05D004481 2.3e-25 119.8 189 40.2
AT4G02170 Arabidopsis thaliana HOM05D003790 ORTHO05D004481 3.9e-25 119.0 179 41.9
Eucgr.K03524 Eucalyptus grandis HOM05D003790 ORTHO05D004481 5.0e-25 118.6 198 42.4
Thhalv10029373m.g Eutrema salsugineum HOM05D003790 ORTHO05D004481 5.0e-25 118.6 181 42.5
A03p31160 Brassica napus HOM05D003790 ORTHO05D004481 8.6e-25 117.9 183 41.0
BraA03t12296Z Brassica rapa HOM05D003790 ORTHO05D004481 1.5e-24 117.1 184 40.8
EL10As5g23497 Beta vulgaris HOM05D003790 ORTHO05D004481 1.9e-24 116.7 177 41.8
BcaC01g06770 Brassica carinata HOM05D003790 ORTHO05D004481 1.9e-24 116.7 189 39.7
BcaC01g06771 Brassica carinata HOM05D003790 ORTHO05D004481 1.9e-24 116.7 189 39.7
C03p38000 Brassica napus HOM05D003790 ORTHO05D004481 1.9e-24 116.7 189 39.7
Thecc.01G102100 Theobroma cacao HOM05D003790 ORTHO05D004481 1.9e-24 116.7 174 45.4
Aa31LG5G1840 Aethionema arabicum HOM05D003790 ORTHO05D004481 2.5e-24 116.3 181 42.0
BcaB01g02435 Brassica carinata HOM05D003790 ORTHO05D004481 7.3e-24 114.8 181 40.3
Gohir.D12G130100 Gossypium hirsutum HOM05D003790 ORTHO05D004481 9.5e-24 114.4 149 48.3
MD11G1317200 Malus domestica HOM05D003790 ORTHO05D004481 9.5e-24 114.4 205 42.0
Migut.D00101 Erythranthe guttata HOM05D003790 ORTHO05D004481 3.6e-23 112.5 168 43.5
HPP92_025189 Vanilla planifolia HOM05D003790 ORTHO05D004481 1.1e-22 110.9 182 39.0
Sc17g0000570 Simmondsia chinensis HOM05D003790 ORTHO05D004481 1.8e-22 110.2 178 43.3
Carub.0006s3500 Capsella rubella HOM05D003790 ORTHO05D004481 5.2e-22 108.6 192 39.6
Eucgr.L02503 Eucalyptus grandis HOM05D003790 ORTHO05D004481 5.2e-22 108.6 189 38.6
Duzib264G0610 Durio zibethinus HOM05D003790 ORTHO05D004481 2.6e-21 106.3 175 43.4
Oeu008453.1 Olea europaea HOM05D003688 ORTHO05D004481 2.2e-20 103.2 163 42.3
SalBow2G3380 Salvia bowleyana HOM05D003790 ORTHO05D004481 2.9e-20 102.8 175 37.7
Eucgr.K03525 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.9e-19 100.1 183 39.9
Duzib147G1191 Durio zibethinus HOM05D003790 ORTHO05D004481 1.2e-18 97.4 178 41.6
HPP92_006897 Vanilla planifolia HOM05D003790 ORTHO05D004481 3.0e-17 92.8 109 49.5
AUR62024684 Chenopodium quinoa HOM05D003790 ORTHO05D004481 6.6e-17 91.7 177 36.2
AUR62011841 Chenopodium quinoa HOM05D003790 ORTHO05D004481 1.9e-16 90.1 175 35.4
MD03G1297400 Malus domestica HOM05D003790 ORTHO05D004481 8.1e-15 84.7 209 34.4
CARHR250350 Cardamine hirsuta HOM05D003790 ORTHO05D004481 3.1e-14 82.8 107 48.6
Nn6g33912 Nelumbo nucifera HOM05D003790 ORTHO05D004481 4.0e-14 82.4 94 45.7
Eucgr.A02768 Eucalyptus grandis HOM05D003790 ORTHO05D004481 8.9e-14 81.3 106 41.5
Eucgr.E02488 Eucalyptus grandis HOM05D003790 ORTHO05D004481 2.0e-13 80.1 96 50.0
Os03g0302800 Oryza sativa ssp. japonica HOM05D003790 ORTHO05D004481 3.4e-13 79.3 196 36.2
Eucgr.F04057 Eucalyptus grandis HOM05D003790 ORTHO05D004481 2.9e-12 76.3 110 43.6
COL.COLO4_09960 Corchorus olitorius HOM05D003790 ORTHO05D004481 8.4e-12 74.7 179 35.2
ATR0706G232 Amborella trichopoda HOM05D003790 ORTHO05D004481 3.2e-11 72.8 188 33.5
Eucgr.L00541 Eucalyptus grandis HOM05D003790 ORTHO05D004481 3.2e-11 72.8 97 47.4
SGA_v2.0_scaffold334G49053 Striga asiatica HOM05D003790 ORTHO05D004481 7.1e-11 71.6 101 42.6
Eucgr.F04083 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.6e-10 70.5 109 44.0
Thhalv10029363m.g Eutrema salsugineum HOM05D003790 ORTHO05D004481 3.5e-10 69.3 147 36.7
SEGI_22681 Sequoiadendron giganteum HOM05D001131 ORTHO05D000972 1.3e-09 67.4 204 33.3
CsaV3_4G001110 Cucumis sativus L. HOM05D003790 ORTHO05D044967 2.5e-08 63.2 177 29.9
Nn2g14986 Nelumbo nucifera HOM05D003790 ORTHO05D004481 3.3e-08 62.8 49 51.0
Sc17g0000580 Simmondsia chinensis HOM05D003790 ORTHO05D004481 1.2e-07 60.8 139 31.7
Eucgr.H01752 Eucalyptus grandis HOM05D003790 ORTHO05D004481 1.6e-07 60.5 55 60.0
Sed0004223 Sechium edule HOM05D001131 ORTHO05D000972 1.6e-07 60.5 184 28.8
Zm00001eb014210 Zea mays HOM05D003790 ORTHO05D004481 2.8e-07 59.7 202 31.2
ClCG05G012470 Citrullus lanatus HOM05D001131 ORTHO05D000972 6.2e-07 58.5 219 25.6
Zm00001eb396420 Zea mays HOM05D003790 ORTHO05D004481 1.1e-06 57.8 202 28.7
SEGI_15713 Sequoiadendron giganteum HOM05D001131 ORTHO05D000972 1.4e-06 57.4 200 27.5
SEGI_11031 Sequoiadendron giganteum HOM05D001131 ORTHO05D000972 4.0e-06 55.8 182 29.7
MELO3C017926.2 Cucumis melo HOM05D003790 ORTHO05D044967 8.9e-06 54.7 157 28.7
SEGI_22892 Sequoiadendron giganteum HOM05D001131 ORTHO05D000972 8.9e-06 54.7 190 26.8


User provided reference genes

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