Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.014G118800 Populus trichocarpa HOM05D003528 ORTHO05D332838 5.5e-19 96.7 50 100.0
Manes.01G229100 Manihot esculenta HOM05D003528 ORTHO05D004548 4.7e-10 67.0 46 73.9
Sc24g0004210 Simmondsia chinensis HOM05D003528 ORTHO05D004548 1.4e-09 65.5 46 71.7
CiPaw.07G118800 Carya illinoinensis HOM05D003528 ORTHO05D004548 2.3e-09 64.7 46 67.4
Thecc.01G315300 Theobroma cacao HOM05D003528 ORTHO05D004548 2.3e-09 64.7 46 67.4
Duzib138G1299 Durio zibethinus HOM05D003528 ORTHO05D004548 5.1e-09 63.5 46 67.4
CiPaw.08G088400 Carya illinoinensis HOM05D003528 ORTHO05D004548 6.7e-09 63.2 46 67.4
Gorai.004G049900 Gossypium raimondii HOM05D003528 ORTHO05D004548 6.7e-09 63.2 46 67.4
Gohir.A08G040200 Gossypium hirsutum HOM05D003528 ORTHO05D004548 8.8e-09 62.8 46 67.4
Gohir.D08G050300 Gossypium hirsutum HOM05D003528 ORTHO05D004548 8.8e-09 62.8 46 67.4
Potri.002G194250 Populus trichocarpa HOM05D003528 ORTHO05D004548 1.5e-08 62.0 46 67.4
Cpa.g.sc18.66 Carica papaya HOM05D003528 ORTHO05D004548 2.0e-08 61.6 46 69.6
Dinv33129 Davidia involucrata HOM05D000041 ORTHO05D000061 3.3e-08 60.8 46 65.2
Ah.02g112380 Amaranthus hybridus HOM05D003528 ORTHO05D004548 4.4e-08 60.5 46 67.4
Ah.11g049180 Amaranthus hybridus HOM05D003528 ORTHO05D004548 7.4e-08 59.7 46 65.2
AUR62011781 Chenopodium quinoa HOM05D003528 ORTHO05D004548 7.4e-08 59.7 46 65.2
AUR62024625 Chenopodium quinoa HOM05D003528 ORTHO05D004548 7.4e-08 59.7 46 65.2
ClCG09G005010 Citrullus lanatus HOM05D003528 ORTHO05D004548 9.7e-08 59.3 46 65.2
Sed0014188 Sechium edule HOM05D003528 ORTHO05D004548 9.7e-08 59.3 46 65.2
Sc17g0000400 Simmondsia chinensis HOM05D003528 ORTHO05D004548 1.3e-07 58.9 46 63.0
EL10As5g23551 Beta vulgaris HOM05D003528 ORTHO05D004548 1.7e-07 58.5 46 63.0
Sed0018248 Sechium edule HOM05D003528 ORTHO05D004548 1.7e-07 58.5 46 63.0
GSVIVG01035000001 Vitis vinifera HOM05D003528 ORTHO05D004548 1.7e-07 58.5 46 63.0
MELO3C015916.2 Cucumis melo HOM05D003528 ORTHO05D004548 2.2e-07 58.2 46 63.0
CsaV3_7G030050 Cucumis sativus L. HOM05D003528 ORTHO05D004548 2.2e-07 58.2 46 63.0
Hma1.2p1_0408F.1_g146580 Hydrangea macrophylla HOM05D003528 ORTHO05D004548 2.2e-07 58.2 46 65.2
Lj2A1207T69 Lonicera japonica HOM05D003528 ORTHO05D004548 2.2e-07 58.2 46 65.2
Rhsim11G0030300 Rhododendron simsii HOM05D001695 ORTHO05D008931 2.2e-07 58.2 46 60.9
Gohir.A11G108500 Gossypium hirsutum HOM05D003528 ORTHO05D004548 2.8e-07 57.8 46 58.7
Gohir.D11G113000 Gossypium hirsutum HOM05D003528 ORTHO05D004548 2.8e-07 57.8 46 58.7
Gorai.007G121500 Gossypium raimondii HOM05D003528 ORTHO05D004548 2.8e-07 57.8 46 58.7
TWI36G1456 Tripterygium wilfordii HOM05D003528 ORTHO05D004548 2.8e-07 57.8 46 65.2
CSS0040819 Camellia sinensis var. sinensis HOM05D003528 ORTHO05D004548 3.7e-07 57.4 46 60.9
CAN.G900.9 Capsicum annuum HOM05D003528 ORTHO05D004548 3.7e-07 57.4 46 65.2
Oeu049917.2 Olea europaea HOM05D003528 ORTHO05D004548 3.7e-07 57.4 46 63.0
Actinidia20984 Actinidia chinensis HOM05D003528 ORTHO05D004548 4.8e-07 57.0 46 60.9
Cc01_g21560 Coffea canephora HOM05D003528 ORTHO05D004548 4.8e-07 57.0 46 58.7
HanXRQChr06g0168111 Helianthus annuus HOM05D003528 ORTHO05D004548 6.3e-07 56.6 46 63.0
THA.LOC104817453 Tarenaya hassleriana HOM05D003528 ORTHO05D004548 6.3e-07 56.6 46 58.7
Lalb_Chr21g0313411 Lupinus albus HOM05D003528 ORTHO05D004548 1.1e-06 55.8 46 60.9
Peaxi162Scf00722g00412 Petunia axillaris HOM05D003528 ORTHO05D004548 1.1e-06 55.8 46 65.2
THA.LOC104818884 Tarenaya hassleriana HOM05D003528 ORTHO05D004548 1.1e-06 55.8 46 58.7
Carub.0003s0613 Capsella rubella HOM05D003528 ORTHO05D004548 1.4e-06 55.5 46 60.9
HanXRQChr04g0106201 Helianthus annuus HOM05D003528 ORTHO05D004548 1.4e-06 55.5 46 60.9
Lsat_1_v5_gn_8_166900 Lactuca sativa HOM05D003528 ORTHO05D004548 1.4e-06 55.5 46 63.0
Sp3g05610 Schrenkiella parvula HOM05D003528 ORTHO05D004548 1.4e-06 55.5 46 60.9
THA.LOC104805013 Tarenaya hassleriana HOM05D003528 ORTHO05D004548 1.4e-06 55.5 46 56.5
TAR636G0526 Trochodendron aralioides HOM05D003528 ORTHO05D004548 1.4e-06 55.5 46 60.9
Atru.chr5.976 Acer truncatum HOM05D003528 ORTHO05D004548 1.8e-06 55.1 46 63.0
MSTRG.21696 Avicennia marina HOM05D003528 ORTHO05D004548 1.8e-06 55.1 46 56.5
CANSAT78G1251 Cannabis sativa HOM05D003528 ORTHO05D004548 1.8e-06 55.1 46 60.9
DCAR_018287 Daucus carota HOM05D003528 ORTHO05D004548 1.8e-06 55.1 46 60.9
Nitab4.5_0004195g0070 Nicotiana tabacum HOM05D003528 ORTHO05D004548 1.8e-06 55.1 46 63.0
Nitab4.5_0005019g0020 Nicotiana tabacum HOM05D003528 ORTHO05D004548 1.8e-06 55.1 46 63.0
Aa31LG5G17210 Aethionema arabicum HOM05D003528 ORTHO05D004548 2.4e-06 54.7 46 60.9
Dinv15182 Davidia involucrata HOM05D003528 ORTHO05D004548 2.4e-06 54.7 46 60.9
Duzib212G0392 Durio zibethinus HOM05D003528 ORTHO05D004548 2.4e-06 54.7 46 63.0
Lalb_Chr02g0151921 Lupinus albus HOM05D003528 ORTHO05D004548 2.4e-06 54.7 46 58.7
A03p34760 Brassica napus HOM05D003528 ORTHO05D015900 3.1e-06 54.3 46 60.9
A05p41400 Brassica napus HOM05D003528 ORTHO05D004548 3.1e-06 54.3 46 60.9
C03p42310 Brassica napus HOM05D003528 ORTHO05D004548 3.1e-06 54.3 46 60.9
C05p60620 Brassica napus HOM05D003528 ORTHO05D004548 3.1e-06 54.3 46 60.9
BolC5t34719H Brassica oleracea HOM05D003528 ORTHO05D004548 3.1e-06 54.3 46 60.9
BraA03t12657Z Brassica rapa HOM05D003528 ORTHO05D015900 3.1e-06 54.3 46 60.9
BraA05t22861Z Brassica rapa HOM05D003528 ORTHO05D004548 3.1e-06 54.3 46 60.9
Dinv44290 Davidia involucrata HOM05D003528 ORTHO05D004548 3.1e-06 54.3 46 60.9
ECA236G2523 Erigeron canadensis HOM05D003528 ORTHO05D004548 3.1e-06 54.3 46 60.9
Thhalv10021435m.g Eutrema salsugineum HOM05D003528 ORTHO05D004548 3.1e-06 54.3 46 58.7
Medtr1g094065 Medicago truncatula HOM05D003528 ORTHO05D004548 3.1e-06 54.3 46 60.9
Hund09644 Selenicereus undatus HOM05D003528 ORTHO05D004548 3.1e-06 54.3 46 58.7
TPR.G9810 Trifolium pratense HOM05D003528 ORTHO05D004548 3.1e-06 54.3 46 60.9
Aqoxy6G02869 Aquilegia oxysepala HOM05D003528 ORTHO05D004548 4.1e-06 53.9 46 58.7
Lj5g0026968 Lotus japonicus HOM05D003528 ORTHO05D004548 4.1e-06 53.9 46 58.7
Manes.03G204400 Manihot esculenta HOM05D003528 ORTHO05D004548 4.1e-06 53.9 46 60.9
Psat6g180760 Pisum sativum HOM05D003528 ORTHO05D004548 4.1e-06 53.9 46 58.7
Sabra08G0079800 Salix brachista HOM05D003528 ORTHO05D004548 4.1e-06 53.9 46 58.7
Solyc10g083930.2 Solanum lycopersicum HOM05D003528 ORTHO05D004548 4.1e-06 53.9 46 63.0
Sopen10g033380 Solanum pennellii HOM05D003528 ORTHO05D004548 4.1e-06 53.9 46 63.0
SGA_v2.0_scaffold334G49078 Striga asiatica HOM05D003528 ORTHO05D004548 4.1e-06 53.9 46 60.9
Ca_10532_v3 Cicer arietinum L. HOM05D003528 ORTHO05D004548 5.3e-06 53.5 46 58.7
FvH4_4g19630 Fragaria vesca HOM05D003528 ORTHO05D004548 5.3e-06 53.5 46 60.9
FAN07G1111 Fragaria x ananassa HOM05D003528 ORTHO05D004548 5.3e-06 53.5 46 60.9
FAN12G4250 Fragaria x ananassa HOM05D003528 ORTHO05D004548 5.3e-06 53.5 46 60.9
Gohir.D02G059200 Gossypium hirsutum HOM05D003528 ORTHO05D004548 5.3e-06 53.5 46 60.9
Lsat_1_v5_gn_4_59101 Lactuca sativa HOM05D005072 ORTHO05D006209 5.3e-06 53.5 46 60.9
PSO170G4786 Papaver somniferum HOM05D003528 ORTHO05D004548 5.3e-06 53.5 46 58.7
PGSC0003DMG400028285 Solanum tuberosum HOM05D003528 ORTHO05D004548 5.3e-06 53.5 46 63.0
AT3G66654 Arabidopsis thaliana HOM05D003528 ORTHO05D004548 7.0e-06 53.1 46 56.5
arahy.Tifrunner.gnm1.ann1.1G30EX Arachis hypogaea HOM05D003528 ORTHO05D004548 7.0e-06 53.1 46 60.9
arahy.Tifrunner.gnm1.ann1.R42YS1 Arachis hypogaea HOM05D003528 ORTHO05D004548 7.0e-06 53.1 46 60.9
Carub.0004s3004 Capsella rubella HOM05D003528 ORTHO05D004548 7.0e-06 53.1 46 60.9
Phvul.007G100400 Phaseolus vulgaris HOM05D003528 ORTHO05D004548 7.0e-06 53.1 46 58.7
vmacro02499 Vaccinium macrocarpon HOM05D003528 ORTHO05D004548 7.0e-06 53.1 46 54.3
VMungo1215G1218 Vigna mungo HOM05D003528 ORTHO05D004548 7.0e-06 53.1 49 49.0
CDE06G1276 Ceratophyllum demersum HOM05D003528 ORTHO05D004548 9.1e-06 52.8 46 58.7
Glyma.10G206100 Glycine max HOM05D003528 ORTHO05D004548 9.1e-06 52.8 46 58.7
Gorai.005G066800 Gossypium raimondii HOM05D003528 ORTHO05D004548 9.1e-06 52.8 46 60.9
MD13G1155100 Malus domestica HOM05D003528 ORTHO05D004548 9.1e-06 52.8 46 60.9
Nn3g21722 Nelumbo nucifera HOM05D003528 ORTHO05D004548 9.1e-06 52.8 46 60.9
RcHm_v2.0_Chr4g0424891 Rosa chinensis HOM05D003528 ORTHO05D004548 9.1e-06 52.8 46 60.9
Sabra10G0111600 Salix brachista HOM05D003528 ORTHO05D004548 9.1e-06 52.8 46 58.7
SalBow3G0973 Salvia bowleyana HOM05D003528 ORTHO05D004548 9.1e-06 52.8 46 56.5
Solyc09g008410.3 Solanum lycopersicum HOM05D003528 ORTHO05D004548 9.1e-06 52.8 46 60.9
Sopen09g003230 Solanum pennellii HOM05D003528 ORTHO05D004548 9.1e-06 52.8 46 60.9
PGSC0003DMG400003896 Solanum tuberosum HOM05D003528 ORTHO05D004548 9.1e-06 52.8 46 60.9
VMungo0720G0534 Vigna mungo HOM05D003528 ORTHO05D004548 9.1e-06 52.8 46 58.7


User provided reference genes

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