Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.014G118600 Populus trichocarpa HOM05D005172 ORTHO05D006324 5.2e-220 767.3 363 100.0
Sabra14G0088100 Salix brachista HOM05D005172 ORTHO05D006324 1.4e-201 706.1 362 92.0
Manes.05G014300 Manihot esculenta HOM05D005172 ORTHO05D006324 1.7e-173 612.8 359 78.8
Manes.01G229300 Manihot esculenta HOM05D005172 ORTHO05D006324 6.9e-172 607.4 347 80.7
TWI36G0897 Tripterygium wilfordii HOM05D005172 ORTHO05D006324 3.8e-170 601.7 363 77.1
Duzib133G1494 Durio zibethinus HOM05D005172 ORTHO05D006324 1.1e-164 583.6 363 73.6
Dinv24461 Davidia involucrata HOM05D005172 ORTHO05D006324 4.1e-164 581.6 363 72.5
Atru.chr5.994 Acer truncatum HOM05D005172 ORTHO05D006324 7.0e-164 580.9 362 73.5
CiPaw.07G118900 Carya illinoinensis HOM05D005172 ORTHO05D006324 1.6e-163 579.7 358 75.1
Thecc.01G315700 Theobroma cacao HOM05D005172 ORTHO05D006324 2.9e-162 575.5 364 73.4
Nn4g25569 Nelumbo nucifera HOM05D005172 ORTHO05D006324 1.9e-161 572.8 364 70.9
Gohir.A07G129100 Gossypium hirsutum HOM05D005172 ORTHO05D006324 3.2e-161 572.0 360 73.3
Gohir.D07G133500 Gossypium hirsutum HOM05D005172 ORTHO05D006324 4.2e-161 571.6 362 72.9
Eucgr.K03551 Eucalyptus grandis HOM05D005172 ORTHO05D006324 5.5e-161 571.2 357 74.8
Haze_05066 Corylus avellana HOM05D005172 ORTHO05D006324 7.2e-161 570.9 347 75.2
CANSAT25G1511 Cannabis sativa HOM05D005172 ORTHO05D006324 9.4e-161 570.5 358 73.5
Gorai.001G144800 Gossypium raimondii HOM05D005172 ORTHO05D006324 1.2e-160 570.1 362 72.9
Cfa005774 Carpinus fangiana HOM05D005172 ORTHO05D006324 2.1e-160 569.3 365 72.3
QL12p019456 Quercus lobata HOM05D005172 ORTHO05D006324 3.6e-160 568.5 362 72.1
Manes.05G011070 Manihot esculenta HOM05D005172 ORTHO05D006324 6.1e-160 567.8 330 80.3
GSVIVG01031247001 Vitis vinifera HOM05D005172 ORTHO05D006324 6.1e-160 567.8 356 72.8
Prupe.8G000200 Prunus persica HOM05D005172 ORTHO05D006324 8.0e-160 567.4 344 75.9
Manes.05G005607 Manihot esculenta HOM05D005172 ORTHO05D006324 1.4e-159 566.6 321 81.3
PGR044G0670 Punica granatum HOM05D005172 ORTHO05D006324 1.8e-159 566.2 342 74.9
MD07G1000100 Malus domestica HOM05D005172 ORTHO05D006324 2.3e-159 565.8 344 75.3
Manes.05G014725 Manihot esculenta HOM05D005172 ORTHO05D006324 3.0e-159 565.5 320 81.2
FAN24G1196 Fragaria x ananassa HOM05D005172 ORTHO05D006324 5.2e-159 564.7 362 72.9
FAN24G2042 Fragaria x ananassa HOM05D005172 ORTHO05D006324 5.2e-159 564.7 362 72.9
FAN19G1206 Fragaria x ananassa HOM05D005172 ORTHO05D006324 8.8e-159 563.9 362 72.7
Manes.08G002402 Manihot esculenta HOM05D005172 ORTHO05D006324 8.8e-159 563.9 321 81.0
RcHm_v2.0_Chr6g0249301 Rosa chinensis HOM05D005172 ORTHO05D006324 1.2e-158 563.5 344 76.2
Hma1.2p1_0008F-1.1_g005570 Hydrangea macrophylla HOM05D005172 ORTHO05D006324 1.5e-158 563.1 363 72.2
Dinv30897 Davidia involucrata HOM05D005172 ORTHO05D006324 5.7e-158 561.2 363 71.1
TAR362G0256 Trochodendron aralioides HOM05D005172 ORTHO05D006324 2.8e-157 558.9 363 69.7
Duzib211G0527 Durio zibethinus HOM05D005172 ORTHO05D006324 3.7e-157 558.5 363 70.2
Carub.0005s2909 Capsella rubella HOM05D005172 ORTHO05D006324 1.7e-154 549.7 343 72.3
arahy.Tifrunner.gnm1.ann1.SY690W Arachis hypogaea HOM05D005172 ORTHO05D006324 2.7e-152 542.3 360 69.7
CSS0017820 Camellia sinensis var. sinensis HOM05D005172 ORTHO05D006324 3.6e-152 542.0 366 69.1
Ca_10273_v3 Cicer arietinum L. HOM05D005172 ORTHO05D006324 4.7e-152 541.6 368 69.6
AT3G62370 Arabidopsis thaliana HOM05D005172 ORTHO05D006324 8.0e-152 540.8 340 72.4
VMungo0720G2990 Vigna mungo HOM05D005172 ORTHO05D006324 1.4e-151 540.0 350 72.0
Lju926A5G28 Lonicera japonica HOM05D005172 ORTHO05D006324 1.8e-151 539.7 359 67.4
CsaV3_7G030060 Cucumis sativus L. HOM05D005172 ORTHO05D006324 2.3e-151 539.3 347 74.1
Phvul.007G213050 Phaseolus vulgaris HOM05D005172 ORTHO05D006324 4.0e-151 538.5 350 72.3
Sp5g01030 Schrenkiella parvula HOM05D005172 ORTHO05D006324 8.8e-151 537.3 345 71.3
Lalb_Chr21g0309651 Lupinus albus HOM05D005172 ORTHO05D006324 1.5e-150 536.6 350 69.4
MBI18_g32028_MAGBIO Magnolia biondii HOM05D005172 ORTHO05D006324 1.5e-150 536.6 365 69.0
Cc02_g35150 Coffea canephora HOM05D005172 ORTHO05D006324 3.4e-150 535.4 329 71.1
Thhalv10006054m.g Eutrema salsugineum HOM05D005172 ORTHO05D006324 3.4e-150 535.4 343 70.6
AL5G45130 Arabidopsis lyrata HOM05D005172 ORTHO05D006324 5.7e-150 534.6 343 71.1
BcaB02g07340 Brassica carinata HOM05D005172 ORTHO05D006324 5.7e-150 534.6 343 70.6
TAR633G1620 Trochodendron aralioides HOM05D005172 ORTHO05D006324 7.5e-150 534.3 313 75.4
BraA07t30243Z Brassica rapa HOM05D005172 ORTHO05D006324 9.8e-150 533.9 363 67.8
Lj5g0001265 Lotus japonicus HOM05D005172 ORTHO05D006324 3.7e-149 531.9 352 71.3
Medtr1g086810 Medicago truncatula HOM05D005172 ORTHO05D006324 3.7e-149 531.9 347 71.5
Eucgr.H01000 Eucalyptus grandis HOM05D005172 ORTHO05D006324 4.8e-149 531.6 328 72.9
Glyma.02G011100 Glycine max HOM05D005172 ORTHO05D006324 4.8e-149 531.6 350 71.1
A07p25960 Brassica napus HOM05D005172 ORTHO05D006324 8.3e-149 530.8 348 69.8
BolC6t37994H Brassica oleracea HOM05D005172 ORTHO05D006324 1.1e-148 530.4 363 67.8
FvH4_2g00030 Fragaria vesca HOM05D005172 ORTHO05D006324 1.1e-148 530.4 313 78.0
Aa31LG10G16300 Aethionema arabicum HOM05D005172 ORTHO05D006324 2.4e-148 529.3 365 67.7
Sed0009537 Sechium edule HOM05D005172 ORTHO05D006324 2.4e-148 529.3 346 73.1
Aqoxy2G02725 Aquilegia oxysepala HOM05D005172 ORTHO05D006324 3.1e-148 528.9 363 67.2
Nitab4.5_0001338g0130 Nicotiana tabacum HOM05D005172 ORTHO05D006324 4.1e-148 528.5 346 69.4
BcaC08g45198 Brassica carinata HOM05D005172 ORTHO05D006324 7.0e-148 527.7 363 67.5
C06p28240 Brassica napus HOM05D005172 ORTHO05D006324 7.0e-148 527.7 363 67.5
Glyma.10G011700 Glycine max HOM05D005172 ORTHO05D006324 9.1e-148 527.3 350 70.6
Nitab4.5_0011508g0010 Nicotiana tabacum HOM05D005172 ORTHO05D006324 1.2e-147 526.9 344 68.9
CARHR172700 Cardamine hirsuta HOM05D005172 ORTHO05D006324 7.7e-147 524.2 328 72.3
SGA_v2.0_scaffold334G49079 Striga asiatica HOM05D005172 ORTHO05D006324 7.7e-147 524.2 360 66.1
Psat6g162640 Pisum sativum HOM05D005172 ORTHO05D006324 6.5e-146 521.2 353 67.7
Peaxi162Scf01061g00133 Petunia axillaris HOM05D005172 ORTHO05D006324 8.6e-146 520.8 361 65.1
PSO761G0644 Papaver somniferum HOM05D005172 ORTHO05D006324 3.3e-145 518.8 357 65.8
DCAR_001909 Daucus carota HOM05D005172 ORTHO05D006324 1.2e-144 516.9 354 67.5
MSTRG.21697 Avicennia marina HOM05D005172 ORTHO05D006324 3.6e-144 515.4 368 64.1
CAN.G1076.20 Capsicum annuum HOM05D005172 ORTHO05D006324 8.0e-144 514.2 347 67.4
EL10As5g23554 Beta vulgaris HOM05D005172 ORTHO05D006324 1.8e-143 513.1 345 69.0
Solyc01g100590.3 Solanum lycopersicum HOM05D005172 ORTHO05D006324 2.3e-143 512.7 341 67.7
PGSC0003DMG400002764 Solanum tuberosum HOM05D005172 ORTHO05D006324 4.0e-143 511.9 341 68.0
ATR0693G418 Amborella trichopoda HOM05D005172 ORTHO05D006324 6.8e-143 511.1 363 65.8
Sopen01g044090 Solanum pennellii HOM05D005172 ORTHO05D006324 8.9e-143 510.8 341 67.7
Ah.01g003950 Amaranthus hybridus HOM05D005172 ORTHO05D006324 2.0e-142 509.6 337 69.7
Oeu018081.1 Olea europaea HOM05D005172 ORTHO05D006324 3.4e-142 508.8 363 64.2
Sc17g0000390 Simmondsia chinensis HOM05D005172 ORTHO05D006324 9.8e-142 507.3 335 70.4
Hund09645 Selenicereus undatus HOM05D005172 ORTHO05D006324 2.2e-141 506.1 359 66.0
PGSC0003DMG400009049 Solanum tuberosum HOM05D005172 ORTHO05D006324 2.8e-141 505.8 363 65.0
SalBow3G3203 Salvia bowleyana HOM05D005172 ORTHO05D006324 3.7e-141 505.4 345 66.1
DCAR_018281 Daucus carota HOM05D005172 ORTHO05D006324 3.1e-140 502.3 363 64.7
vmacro01567 Vaccinium macrocarpon HOM05D005172 ORTHO05D006324 4.1e-140 501.9 435 57.5
Rhsim11G0096600 Rhododendron simsii HOM05D005172 ORTHO05D006324 1.2e-139 500.4 451 54.5
Sopen01g031090 Solanum pennellii HOM05D005172 ORTHO05D006324 1.6e-139 500.0 363 64.5
AUR62031944 Chenopodium quinoa HOM05D005172 ORTHO05D006324 2.7e-139 499.2 347 67.1
Solyc01g079310.3 Solanum lycopersicum HOM05D005172 ORTHO05D006324 4.5e-139 498.4 363 64.5
AUR62022232 Chenopodium quinoa HOM05D005172 ORTHO05D006324 1.3e-138 496.9 345 67.2
CAN.G293.20 Capsicum annuum HOM05D005172 ORTHO05D006324 3.8e-138 495.4 363 64.2
Gohir.D12G127500 Gossypium hirsutum HOM05D005172 ORTHO05D006324 3.8e-138 495.4 365 67.1
Gorai.008G138400 Gossypium raimondii HOM05D005172 ORTHO05D006324 1.1e-137 493.8 365 67.1
CDE08G0763 Ceratophyllum demersum HOM05D005172 ORTHO05D006324 9.5e-137 490.7 359 63.5
Ah.02g112400 Amaranthus hybridus HOM05D005172 ORTHO05D006324 1.2e-136 490.3 384 62.0
Manes.05G006214 Manihot esculenta HOM05D005172 ORTHO05D006324 1.2e-136 490.3 277 81.6
MELO3C015915.2 Cucumis melo HOM05D005172 ORTHO05D006324 2.8e-136 489.2 360 67.8
Manes.05G008035 Manihot esculenta HOM05D005172 ORTHO05D006324 2.8e-136 489.2 277 81.2
MSTRG.20376 Avicennia marina HOM05D005172 ORTHO05D006324 3.6e-136 488.8 345 64.6
ClCG09G005000 Citrullus lanatus HOM05D005172 ORTHO05D006324 3.6e-136 488.8 347 69.2
Manes.05G012891 Manihot esculenta HOM05D005172 ORTHO05D006324 2.3e-135 486.1 277 80.9
HPP92_002597 Vanilla planifolia HOM05D005172 ORTHO05D006324 4.6e-131 471.9 366 59.6
Cpa.g.sc18.70 Carica papaya HOM05D005172 ORTHO05D006324 6.0e-131 471.5 359 63.2
Os03g0309000 Oryza sativa ssp. japonica HOM05D005172 ORTHO05D006324 7.3e-129 464.5 320 65.9
Migut.B00958 Erythranthe guttata HOM05D005172 ORTHO05D006324 1.6e-128 463.4 354 59.9
Zm00001eb014830 Zea mays HOM05D005172 ORTHO05D006324 1.5e-126 456.8 342 60.2
THA.LOC104827661 Tarenaya hassleriana HOM05D005172 ORTHO05D006324 9.5e-121 437.6 267 73.0
SalBow7G2322 Salvia bowleyana HOM05D006337 ORTHO05D008050 2.8e-120 436.0 363 57.6
arahy.Tifrunner.gnm1.ann1.2XA8QH Arachis hypogaea HOM05D005172 ORTHO05D006324 3.6e-120 435.6 265 74.3
Actinidia16862 Actinidia chinensis HOM05D005172 ORTHO05D006324 4.7e-120 435.3 315 64.1
SEGI_40738 Sequoiadendron giganteum HOM05D005172 ORTHO05D006324 5.2e-111 405.2 337 57.3
HPP92_012811 Vanilla planifolia HOM05D005172 ORTHO05D006324 1.9e-108 396.7 287 62.4
FAN20G2313 Fragaria x ananassa HOM05D005172 ORTHO05D006324 1.4e-103 380.6 229 75.1
FAN20G2797 Fragaria x ananassa HOM05D005172 ORTHO05D006324 2.9e-101 372.9 251 69.3
unitig_0.g2227 Utricularia gibba HOM05D005172 ORTHO05D003916 5.4e-100 368.6 274 58.8
Hma1.2p1_3280F.1_g334820 Hydrangea macrophylla HOM05D005172 ORTHO05D006324 9.3e-100 367.9 317 58.0
Ciclev10020948m.g Citrus clementina HOM05D005172 ORTHO05D006324 9.6e-97 357.8 205 77.6
Nitab4.5_0003540g0100 Nicotiana tabacum HOM05D005172 ORTHO05D006324 6.2e-96 355.1 231 69.7
Lalb_Chr06g0166961 Lupinus albus HOM05D005172 ORTHO05D006324 1.0e-90 337.8 209 72.2
Mapoly0070s0043 Marchantia polymorpha HOM05D005172 ORTHO05D006324 1.8e-90 337.0 354 48.3
Nitab4.5_0006240g0010 Nicotiana tabacum HOM05D005172 ORTHO05D006324 8.7e-90 334.7 334 53.0
Oeu000005.1 Olea europaea HOM05D005172 ORTHO05D006324 3.3e-89 332.8 235 63.4
SEGI_37594 Sequoiadendron giganteum HOM05D005172 ORTHO05D006324 4.8e-88 328.9 261 59.8
Pp3c15_10420 Physcomitrium patens HOM05D005172 ORTHO05D006324 3.4e-86 322.8 334 47.9
SMO119G0084 Selaginella moellendorffii HOM05D005172 ORTHO05D006324 5.8e-86 322.0 353 47.0
Pp3c9_8970 Physcomitrium patens HOM05D005172 ORTHO05D006324 7.6e-86 321.6 349 47.0
COL.COLO4_23212 Corchorus olitorius HOM05D005172 ORTHO05D006324 3.0e-82 309.7 180 78.9
Ciclev10024074m.g Citrus clementina HOM05D005172 ORTHO05D006324 1.1e-79 301.2 203 69.0
AagrBONN_evm.TU.Sc2ySwM_228.5181 Anthoceros agrestis HOM05D005172 ORTHO05D006324 4.5e-78 295.8 313 47.9
Gohir.A12G123800 Gossypium hirsutum HOM05D005172 ORTHO05D006324 3.2e-76 289.7 210 67.6
TPR.G38637 Trifolium pratense HOM05D005172 ORTHO05D006324 3.5e-75 286.2 178 74.2
Peaxi162Scf00691g00617 Petunia axillaris HOM05D005172 ORTHO05D006324 1.6e-59 234.2 243 49.8
Ciclev10023330m.g Citrus clementina HOM05D005172 ORTHO05D006324 4.7e-59 232.6 156 71.2
Lalb_Chr06g0166951 Lupinus albus HOM05D005172 ORTHO05D006324 2.2e-53 213.8 144 70.1
Oeu008479.1 Olea europaea HOM05D005172 ORTHO05D006324 1.1e-49 201.4 280 41.1
CBR_g51501 Chara braunii HOM05D005172 ORTHO05D006324 1.7e-40 171.0 240 40.4
Ciclev10023884m.g Citrus clementina HOM05D005172 ORTHO05D006324 1.0e-34 151.8 109 68.8
TPR.G38640 Trifolium pratense HOM05D005172 ORTHO05D006324 1.4e-31 141.4 110 62.7
COL.COLO4_23213 Corchorus olitorius HOM05D005172 ORTHO05D006324 9.5e-28 128.6 100 59.0
SMO163G0002 Selaginella moellendorffii HOM05D005172 ORTHO05D006324 3.1e-23 113.6 102 52.0
CAN.G1071.4 Capsicum annuum HOM05D005172 ORTHO05D006324 1.1e-20 105.1 84 57.1
CBR_g51503 Chara braunii HOM05D005172 ORTHO05D006324 2.3e-13 80.9 106 35.8
GSVIVG01037608001 Vitis vinifera HOM05D005172 ORTHO05D439154 5.4e-07 59.7 111 33.3


User provided reference genes

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