Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.014G118300 Populus trichocarpa HOM05D006547 ORTHO05D008112 4.9e-70 267.7 136 100.0
Sabra14G0087800 Salix brachista HOM05D006547 ORTHO05D008112 6.0e-52 207.6 130 81.5
Potri.002G193300 Populus trichocarpa HOM05D006547 ORTHO05D008112 3.6e-49 198.4 136 77.2
Sabra02G0162800 Salix brachista HOM05D006547 ORTHO05D008112 2.3e-43 179.1 136 72.8
TAR365G0268 Trochodendron aralioides HOM05D006547 ORTHO05D008112 2.3e-27 125.9 126 59.5
Duzib248G0337 Durio zibethinus HOM05D006547 ORTHO05D008112 3.0e-27 125.6 131 59.5
Thecc.02G266700 Theobroma cacao HOM05D006547 ORTHO05D008112 5.7e-26 121.3 123 59.3
CiPaw.07G119400 Carya illinoinensis HOM05D006547 ORTHO05D008112 9.7e-26 120.6 147 50.3
TAR362G1145 Trochodendron aralioides HOM05D006547 ORTHO05D008112 9.7e-26 120.6 140 52.1
Glyma.20G175000 Glycine max HOM05D006547 ORTHO05D008112 1.6e-25 119.8 137 54.0
TAR633G2779 Trochodendron aralioides HOM05D006547 ORTHO05D008112 6.3e-25 117.9 137 55.5
Gohir.A12G145800 Gossypium hirsutum HOM05D006547 ORTHO05D008112 1.8e-24 116.3 136 52.9
Gohir.D12G150400 Gossypium hirsutum HOM05D006547 ORTHO05D008112 2.4e-24 115.9 136 52.9
Gorai.008G161900 Gossypium raimondii HOM05D006547 ORTHO05D008112 2.4e-24 115.9 136 52.9
Manes.01G229900 Manihot esculenta HOM05D006547 ORTHO05D008112 2.6e-23 112.5 136 53.7
Ciclev10022819m.g Citrus clementina HOM05D006547 ORTHO05D008112 4.5e-23 111.7 131 55.0
Duzib251G0664 Durio zibethinus HOM05D006547 ORTHO05D008112 2.9e-22 109.0 124 54.0
Lj5g0010023 Lotus japonicus HOM05D006547 ORTHO05D008112 3.8e-22 108.6 136 46.3
Atru.chr5.966 Acer truncatum HOM05D006547 ORTHO05D008112 5.0e-22 108.2 146 52.7
Glyma.10G217100 Glycine max HOM05D006547 ORTHO05D008112 5.0e-22 108.2 136 50.0
Haze_05072 Corylus avellana HOM05D006547 ORTHO05D008112 8.5e-22 107.5 139 54.0
Ca_10619_v3 Cicer arietinum L. HOM05D006547 ORTHO05D008112 1.1e-21 107.1 137 48.9
Duzib268G0572 Durio zibethinus HOM05D006547 ORTHO05D008112 2.5e-21 105.9 130 52.3
Dinv15146 Davidia involucrata HOM05D004325 ORTHO05D005470 5.5e-21 104.8 140 50.0
Cfa005764 Carpinus fangiana HOM05D006547 ORTHO05D008112 1.2e-20 103.6 141 53.2
QL12p019056 Quercus lobata HOM05D006547 ORTHO05D008112 1.6e-20 103.2 144 50.0
FAN26G3307 Fragaria x ananassa HOM05D006547 ORTHO05D008112 2.7e-20 102.4 142 48.6
Phvul.007G089100 Phaseolus vulgaris HOM05D006547 ORTHO05D008112 6.1e-20 101.3 136 48.5
Lalb_Chr02g0141791 Lupinus albus HOM05D006547 ORTHO05D008112 1.0e-19 100.5 83 62.7
TPR.G8830 Trifolium pratense HOM05D006547 ORTHO05D008112 1.4e-19 100.1 135 45.2
CiPaw.08G087700 Carya illinoinensis HOM05D006547 ORTHO05D008112 2.3e-19 99.4 126 54.0
Manes.05G013600 Manihot esculenta HOM05D006547 ORTHO05D008112 3.0e-19 99.0 113 55.8
CSS0011798 Camellia sinensis var. sinensis HOM05D006547 ORTHO05D008112 8.8e-19 97.4 135 46.7
Hma1.2p1_0486F.1_g163490 Hydrangea macrophylla HOM05D006547 ORTHO05D008112 8.8e-19 97.4 135 48.1
FAN28G2331 Fragaria x ananassa HOM05D006547 ORTHO05D008112 1.9e-18 96.3 146 46.6
VMungo0720G0102 Vigna mungo HOM05D006547 ORTHO05D008112 2.5e-18 95.9 72 69.4
Lalb_Chr03g0036161 Lupinus albus HOM05D006547 ORTHO05D008112 3.3e-18 95.5 109 50.5
CAN.G1280.37 Capsicum annuum HOM05D006547 ORTHO05D008112 4.3e-18 95.1 80 61.2
FAN23G3047 Fragaria x ananassa HOM05D006547 ORTHO05D008112 4.3e-18 95.1 146 46.6
Medtr1g096530 Medicago truncatula HOM05D006547 ORTHO05D008112 4.3e-18 95.1 113 52.2
Nitab4.5_0000363g0200 Nicotiana tabacum HOM05D006547 ORTHO05D008112 5.7e-18 94.7 102 53.9
COL.COLO4_23526 Corchorus olitorius HOM05D006547 ORTHO05D008112 9.7e-18 94.0 119 50.4
RcHm_v2.0_Chr3g0487231 Rosa chinensis HOM05D006547 ORTHO05D008112 9.7e-18 94.0 145 45.5
Oeu038038.1 Olea europaea HOM05D006547 ORTHO05D008112 8.2e-17 90.9 114 49.1
TWI36G0249 Tripterygium wilfordii HOM05D006547 ORTHO05D008112 8.2e-17 90.9 142 50.7
Cpa.g.sc18.81 Carica papaya HOM05D006547 ORTHO05D008112 3.1e-16 89.0 135 48.9
DCAR_002885 Daucus carota HOM05D006547 ORTHO05D008112 9.1e-16 87.4 80 66.2
FvH4_1g26990 Fragaria vesca HOM05D006547 ORTHO05D008112 1.2e-15 87.0 132 47.0
FAN19G2346 Fragaria x ananassa HOM05D006547 ORTHO05D008112 1.2e-15 87.0 132 47.0
Nn4g25552 Nelumbo nucifera HOM05D006547 ORTHO05D008112 1.2e-15 87.0 116 46.6
arahy.Tifrunner.gnm1.ann1.BQK7VT Arachis hypogaea HOM05D006547 ORTHO05D008112 2.6e-15 85.9 137 45.3
Gohir.A01G157750 Gossypium hirsutum HOM05D006547 ORTHO05D008112 7.7e-15 84.3 78 62.8
Gohir.D01G152800 Gossypium hirsutum HOM05D006547 ORTHO05D008112 7.7e-15 84.3 78 62.8
Oeu008480.1 Olea europaea HOM05D006547 ORTHO05D008112 1.3e-14 83.6 127 46.5
Nitab4.5_0007407g0060 Nicotiana tabacum HOM05D006547 ORTHO05D008112 2.9e-14 82.4 63 65.1
DCAR_005744 Daucus carota HOM05D006547 ORTHO05D008112 3.8e-14 82.0 87 56.3
Gorai.002G189200 Gossypium raimondii HOM05D006547 ORTHO05D008112 5.0e-14 81.6 108 51.9
vmacro02389 Vaccinium macrocarpon HOM05D006547 ORTHO05D008112 6.5e-14 81.3 79 59.5
TWI18G0834 Tripterygium wilfordii HOM05D006547 ORTHO05D008112 1.1e-13 80.5 142 47.9
Peaxi162Scf00058g00236 Petunia axillaris HOM05D006547 ORTHO05D008112 1.9e-13 79.7 61 67.2
Rhsim13G0003400 Rhododendron simsii HOM05D006547 ORTHO05D008112 3.2e-13 79.0 75 62.7
MBI18_g22340_MAGBIO Magnolia biondii HOM05D006547 ORTHO05D008112 5.5e-13 78.2 98 46.9
Lsat_1_v5_gn_9_4661 Lactuca sativa HOM05D006547 ORTHO05D008112 7.2e-13 77.8 120 45.8
ATR0693G012 Amborella trichopoda HOM05D006547 ORTHO05D008112 9.4e-13 77.4 82 56.1
Oeu044737.1 Olea europaea HOM05D006547 ORTHO05D008112 1.2e-12 77.0 81 54.3
PGSC0003DMG401007298 Solanum tuberosum HOM05D006547 ORTHO05D008112 1.6e-12 76.6 110 49.1
MD09G1285300 Malus domestica HOM05D006547 ORTHO05D008112 2.1e-12 76.3 67 61.2
MD17G1278000 Malus domestica HOM05D006547 ORTHO05D008112 2.7e-12 75.9 136 44.9
Prupe.3G008700 Prunus persica HOM05D006547 ORTHO05D008112 3.6e-12 75.5 72 59.7
ECA247G3592 Erigeron canadensis HOM05D006547 ORTHO05D008112 6.1e-12 74.7 158 39.2
CANSAT25G1528 Cannabis sativa HOM05D006547 ORTHO05D008112 1.0e-11 73.9 51 74.5
Solyc06g009510.1 Solanum lycopersicum HOM05D006547 ORTHO05D008112 1.4e-11 73.6 79 55.7
Sopen06g004170 Solanum pennellii HOM05D006547 ORTHO05D008112 1.4e-11 73.6 79 55.7
CAN.G293.16 Capsicum annuum HOM05D006547 ORTHO05D008112 1.8e-11 73.2 112 46.4
DCAR_018278 Daucus carota HOM05D006547 ORTHO05D008112 1.8e-11 73.2 75 56.0
MBI19_g03260_MAGBIO Magnolia biondii HOM05D001624 ORTHO05D001530 2.3e-11 72.8 100 45.0
Actinidia25863 Actinidia chinensis HOM05D006547 ORTHO05D008112 3.0e-11 72.4 107 48.6
MSTRG.21702 Avicennia marina HOM05D006547 ORTHO05D008112 3.0e-11 72.4 114 42.1
DCAR_012331 Daucus carota HOM05D006547 ORTHO05D008112 3.0e-11 72.4 89 47.2
Migut.D00065 Erythranthe guttata HOM05D006547 ORTHO05D008112 3.0e-11 72.4 72 54.2
Sc17g0000340 Simmondsia chinensis HOM05D006547 ORTHO05D008112 3.0e-11 72.4 124 42.7
SalBow3G4324 Salvia bowleyana HOM05D006547 ORTHO05D008112 5.1e-11 71.6 73 54.8
SGA_v2.0_scaffold334G49085 Striga asiatica HOM05D006547 ORTHO05D008112 5.1e-11 71.6 78 51.3
Ciclev10006764m.g Citrus clementina HOM05D006547 ORTHO05D008112 1.1e-10 70.5 70 54.3
BcaB01g03174 Brassica carinata HOM05D006547 ORTHO05D008112 2.0e-10 69.7 81 53.1
BcaB06g29454 Brassica carinata HOM05D006547 ORTHO05D008112 2.0e-10 69.7 82 52.4
Carub.0004s3001 Capsella rubella HOM05D006547 ORTHO05D008112 2.0e-10 69.7 81 53.1
Hma1.2p1_0408F.1_g146550 Hydrangea macrophylla HOM05D006547 ORTHO05D008112 2.0e-10 69.7 84 51.2
BolC4t21695H Brassica oleracea HOM05D006547 ORTHO05D008112 4.4e-10 68.6 82 50.0
CsaV3_3G026610 Cucumis sativus L. HOM05D006547 ORTHO05D008112 4.4e-10 68.6 76 46.1
AT2G47270 Arabidopsis thaliana HOM05D006547 ORTHO05D008112 5.7e-10 68.2 78 55.1
BcaC01g05038 Brassica carinata HOM05D006547 ORTHO05D008112 5.7e-10 68.2 81 51.9
A05p00570 Brassica napus HOM05D006547 ORTHO05D008112 5.7e-10 68.2 81 50.6
C03p30880 Brassica napus HOM05D006547 ORTHO05D008112 5.7e-10 68.2 81 51.9
BolC3t15440H Brassica oleracea HOM05D006547 ORTHO05D008112 5.7e-10 68.2 81 51.9
EL10As5g23562 Beta vulgaris HOM05D006547 ORTHO05D008112 7.4e-10 67.8 73 57.5
A04p34890 Brassica napus HOM05D006547 ORTHO05D008112 7.4e-10 67.8 82 50.0
BraSC79t46680Z Brassica rapa HOM05D006547 ORTHO05D008112 7.4e-10 67.8 82 50.0
CARHR142670 Cardamine hirsuta HOM05D006547 ORTHO05D008112 9.7e-10 67.4 81 51.9
AL302U10010 Arabidopsis lyrata HOM05D006547 ORTHO05D008112 1.3e-09 67.0 78 53.8
AL4G46840 Arabidopsis lyrata HOM05D006547 ORTHO05D008112 1.3e-09 67.0 78 53.8
HanXRQChr15g0465071 Helianthus annuus HOM05D006547 ORTHO05D008112 1.3e-09 67.0 73 52.1
Sp4g29240 Schrenkiella parvula HOM05D006547 ORTHO05D008112 1.3e-09 67.0 81 50.6
BraA05t19055Z Brassica rapa HOM05D006547 ORTHO05D008112 1.7e-09 66.6 81 49.4
Thhalv10001736m.g Eutrema salsugineum HOM05D006547 ORTHO05D008112 1.7e-09 66.6 81 50.6
Nn3g21744 Nelumbo nucifera HOM05D006547 ORTHO05D008112 2.2e-09 66.2 104 45.2
C04p00620 Brassica napus HOM05D006547 ORTHO05D008112 2.8e-09 65.9 79 50.6
PSO761G0312 Papaver somniferum HOM05D006547 ORTHO05D008112 2.8e-09 65.9 147 34.0
Aa31LG1G28590 Aethionema arabicum HOM05D006547 ORTHO05D008112 3.7e-09 65.5 84 47.6
BcaB02g08786 Brassica carinata HOM05D006547 ORTHO05D008112 3.7e-09 65.5 78 51.3
MELO3C012934.2 Cucumis melo HOM05D006547 ORTHO05D008112 3.7e-09 65.5 76 44.7
ClCG10G011560 Citrullus lanatus HOM05D006547 ORTHO05D008112 4.8e-09 65.1 52 57.7
Sed0017392 Sechium edule HOM05D006547 ORTHO05D008112 4.8e-09 65.1 77 46.8
PGSC0003DMG400009058 Solanum tuberosum HOM05D006547 ORTHO05D008112 8.2e-09 64.3 115 40.9
C04p72660 Brassica napus HOM05D006547 ORTHO05D008112 1.1e-08 63.9 100 43.0
Nitab4.5_0000222g0070 Nicotiana tabacum HOM05D006547 ORTHO05D008112 1.1e-08 63.9 61 54.1
HanXRQChr10g0285031 Helianthus annuus HOM05D006547 ORTHO05D008112 1.8e-08 63.2 136 34.6
PSO210G6541 Papaver somniferum HOM05D006547 ORTHO05D008112 1.8e-08 63.2 141 34.0
THA.LOC104817451 Tarenaya hassleriana HOM05D006547 ORTHO05D008112 1.8e-08 63.2 53 64.2
Sopen01g031050 Solanum pennellii HOM05D006547 ORTHO05D008112 4.1e-08 62.0 121 41.3
Solyc01g079270.1 Solanum lycopersicum HOM05D006547 ORTHO05D008112 7.0e-08 61.2 113 41.6
Gohir.A04G137350 Gossypium hirsutum HOM05D034510 ORTHO05D008112 9.1e-08 60.8 93 44.1
Nn3g20922 Nelumbo nucifera HOM05D006973 ORTHO05D008636 1.2e-07 60.5 54 50.0
SGA_v2.0_scaffold376G50290 Striga asiatica HOM05D006547 ORTHO05D008112 1.5e-07 60.1 72 45.8
Potri.002G060100 Populus trichocarpa HOM05D006973 ORTHO05D008636 2.0e-07 59.7 86 37.2
Sc05g0000320 Simmondsia chinensis HOM05D006547 ORTHO05D008112 2.6e-07 59.3 83 48.2
TAR629G2498 Trochodendron aralioides HOM05D006973 ORTHO05D008636 2.6e-07 59.3 45 57.8
Dinv21566 Davidia involucrata HOM05D006973 ORTHO05D008636 4.5e-07 58.5 88 37.5
Sabra02G0048600 Salix brachista HOM05D006973 ORTHO05D008636 4.5e-07 58.5 96 38.5
Gohir.D04G180550 Gossypium hirsutum HOM05D034510 ORTHO05D047560 7.7e-07 57.8 93 43.0
Gorai.012G173700 Gossypium raimondii HOM05D034510 ORTHO05D047560 7.7e-07 57.8 93 43.0
MBI07_g21782_MAGBIO Magnolia biondii HOM05D006973 ORTHO05D008636 1.0e-06 57.4 54 46.3
MBI07_g41313_MAGBIO Magnolia biondii HOM05D006973 ORTHO05D008636 1.0e-06 57.4 54 46.3
Peaxi162Scf00111g00009 Petunia axillaris HOM05D006973 ORTHO05D008636 1.3e-06 57.0 53 47.2
Nitab4.5_0003934g0010 Nicotiana tabacum HOM05D006973 ORTHO05D008636 1.7e-06 56.6 53 43.4
Nitab4.5_0001675g0100 Nicotiana tabacum HOM05D006973 ORTHO05D008636 2.2e-06 56.2 53 43.4
Duzib187G1733 Durio zibethinus HOM05D006973 ORTHO05D008636 3.8e-06 55.5 53 41.5
Gohir.A11G060500 Gossypium hirsutum HOM05D006973 ORTHO05D008636 3.8e-06 55.5 53 41.5
Gohir.D11G064600 Gossypium hirsutum HOM05D006973 ORTHO05D008636 3.8e-06 55.5 53 41.5
Gorai.007G069800 Gossypium raimondii HOM05D006973 ORTHO05D008636 3.8e-06 55.5 53 41.5
PGSC0003DMG400017344 Solanum tuberosum HOM05D006973 ORTHO05D008636 3.8e-06 55.5 53 43.4
Thecc.01G161800 Theobroma cacao HOM05D006973 ORTHO05D008636 3.8e-06 55.5 53 43.4
CAN.G585.39 Capsicum annuum HOM05D006973 ORTHO05D008636 5.0e-06 55.1 53 43.4
Lalb_Chr04g0248771 Lupinus albus HOM05D006973 ORTHO05D008636 5.0e-06 55.1 44 52.3
Solyc07g056360.1 Solanum lycopersicum HOM05D006973 ORTHO05D008636 6.5e-06 54.7 53 41.5
Ciclev10033026m.g Citrus clementina HOM05D006973 ORTHO05D008636 8.5e-06 54.3 47 44.7
Duzib147G0021 Durio zibethinus HOM05D006973 ORTHO05D008636 8.5e-06 54.3 53 41.5
FAN05G1052 Fragaria x ananassa HOM05D006973 ORTHO05D008636 8.5e-06 54.3 53 41.5


User provided reference genes

Program Settings