Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.014G111500 Populus trichocarpa HOM05D005434 ORTHO05D006412 0.0e+00 1506.5 869 100.0
Sabra14G0081900 Salix brachista HOM05D005434 ORTHO05D006412 0.0e+00 1112.8 837 80.0
Potri.002G186200 Populus trichocarpa HOM05D005434 ORTHO05D006412 0.0e+00 1105.1 870 76.6
Manes.05G008100 Manihot esculenta HOM05D005434 ORTHO05D006412 3.1e-210 736.1 867 52.5
QL12p035062 Quercus lobata HOM05D005434 ORTHO05D006412 2.7e-169 600.1 848 46.1
Thecc.01G326300 Theobroma cacao HOM05D005434 ORTHO05D006412 1.8e-162 577.4 862 44.4
Atru.chr5.851 Acer truncatum HOM05D005434 ORTHO05D006412 3.1e-162 576.6 883 43.5
Duzib133G0025 Durio zibethinus HOM05D005434 ORTHO05D006412 1.2e-145 521.5 832 42.3
CiPaw.08G081800 Carya illinoinensis HOM05D005434 ORTHO05D006412 1.1e-143 515.0 877 41.5
Dinv12078 Davidia involucrata HOM05D005434 ORTHO05D006412 6.2e-142 509.2 720 46.8
Haze_05156 Corylus avellana HOM05D005434 ORTHO05D006412 4.1e-138 496.5 831 42.5
Duzib138G0614 Durio zibethinus HOM05D005434 ORTHO05D006412 3.9e-136 490.0 868 40.6
COL.COLO4_23119 Corchorus olitorius HOM05D005434 ORTHO05D006412 6.8e-133 479.2 869 40.2
MD09G1291300 Malus domestica HOM05D005434 ORTHO05D006412 1.7e-131 474.6 903 39.3
Actinidia20964 Actinidia chinensis HOM05D005434 ORTHO05D006412 1.4e-130 471.5 864 40.2
Gorai.007G117900 Gossypium raimondii HOM05D005434 ORTHO05D006412 1.5e-127 461.5 882 38.8
TAR636G0087 Trochodendron aralioides HOM05D005434 ORTHO05D006412 1.9e-127 461.1 863 42.8
Gohir.A11G105400 Gossypium hirsutum HOM05D005434 ORTHO05D006412 4.4e-124 449.9 884 38.2
Gorai.001G148200 Gossypium raimondii HOM05D005434 ORTHO05D006412 4.4e-124 449.9 864 39.9
MD17G1286100 Malus domestica HOM05D005434 ORTHO05D006412 4.4e-124 449.9 896 38.7
TAR365G0925 Trochodendron aralioides HOM05D005434 ORTHO05D006412 2.4e-122 444.1 872 40.9
RcHm_v2.0_Chr3g0485651 Rosa chinensis HOM05D005434 ORTHO05D006412 5.4e-122 443.0 894 37.7
Prupe.3G001600 Prunus persica HOM05D005434 ORTHO05D006412 2.1e-121 441.0 845 40.2
Gohir.D11G110300 Gossypium hirsutum HOM05D005434 ORTHO05D006412 1.3e-120 438.3 882 37.8
Gohir.A07G131800 Gossypium hirsutum HOM05D005434 ORTHO05D006412 2.3e-120 437.6 864 39.6
TWI14G0253 Tripterygium wilfordii HOM05D005434 ORTHO05D006412 1.3e-118 431.8 886 38.5
Glyma.02G007100 Glycine max HOM05D005434 ORTHO05D006412 2.4e-114 417.5 876 36.9
SHI34042 Sapria himalayana HOM05D005434 ORTHO05D006412 3.0e-112 410.6 841 38.6
FvH4_1g26160 Fragaria vesca HOM05D005434 ORTHO05D006412 6.6e-112 409.5 912 35.9
Rhsim02G0256300 Rhododendron simsii HOM05D005434 ORTHO05D006412 9.6e-111 405.6 842 37.8
FAN19G2204 Fragaria x ananassa HOM05D005434 ORTHO05D006412 1.8e-109 401.4 912 35.9
Glyma.10G138700 Glycine max HOM05D005434 ORTHO05D006412 9.9e-108 395.6 884 35.7
FAN23G2884 Fragaria x ananassa HOM05D005434 ORTHO05D006412 1.1e-106 392.1 903 36.0
Gohir.D07G136100 Gossypium hirsutum HOM05D005434 ORTHO05D006412 2.1e-105 387.9 814 38.5
Lj5g0001301 Lotus japonicus HOM05D005434 ORTHO05D006412 1.0e-104 385.6 879 35.6
Phvul.007G208600 Phaseolus vulgaris HOM05D005434 ORTHO05D006412 8.7e-104 382.5 870 35.2
Psat6g158560 Pisum sativum HOM05D005434 ORTHO05D006412 1.3e-102 378.6 864 36.3
TPR.G3083 Trifolium pratense HOM05D005434 ORTHO05D006412 9.0e-101 372.5 849 36.7
FAN26G2209 Fragaria x ananassa HOM05D005434 ORTHO05D006412 1.5e-100 371.7 882 35.5
PGR142G2929 Punica granatum HOM05D005434 ORTHO05D006412 1.1e-98 365.5 972 34.1
ClCG02G017720 Citrullus lanatus HOM05D005434 ORTHO05D006412 1.5e-95 355.1 853 36.0
Ciclev10019510m.g Citrus clementina HOM05D005434 ORTHO05D006412 2.8e-94 350.9 622 40.7
Medtr1g085710 Medicago truncatula HOM05D005434 ORTHO05D006412 8.2e-94 349.4 852 35.2
FAN28G1136 Fragaria x ananassa HOM05D005434 ORTHO05D006412 9.0e-93 345.9 957 32.7
CANSAT25G2989 Cannabis sativa HOM05D005434 ORTHO05D006412 4.5e-92 343.6 977 34.2
Sed0005889 Sechium edule HOM05D005434 ORTHO05D006412 1.3e-91 342.0 905 33.9
Ca_10237_v3 Cicer arietinum L. HOM05D005434 ORTHO05D006412 3.8e-91 340.5 833 34.7
CsaV3_6G012840 Cucumis sativus L. HOM05D005434 ORTHO05D006412 1.2e-89 335.5 867 34.9
VMungo0720G1215 Vigna mungo HOM05D005434 ORTHO05D006412 1.6e-89 335.1 818 33.3
Sed0026347 Sechium edule HOM05D005434 ORTHO05D006412 1.0e-88 332.4 865 34.5
Cpa.g.sc57.27 Carica papaya HOM05D005434 ORTHO05D006412 1.1e-87 328.9 817 35.4
arahy.Tifrunner.gnm1.ann1.G6BN46 Arachis hypogaea HOM05D005434 ORTHO05D006412 1.3e-86 325.5 897 31.9
MELO3C013628.2 Cucumis melo HOM05D005434 ORTHO05D006412 1.3e-86 325.5 868 34.1
Nn3g21972 Nelumbo nucifera HOM05D005434 ORTHO05D006412 3.1e-85 320.9 950 34.4
AT2G46980 Arabidopsis thaliana HOM05D005434 ORTHO05D006412 1.2e-84 318.9 866 32.9
CiPaw.07G126300 Carya illinoinensis HOM05D005434 ORTHO05D006412 2.0e-84 318.2 662 39.3
DCAR_005712 Daucus carota HOM05D005434 ORTHO05D006412 3.8e-83 313.9 972 32.9
AL4G46460 Arabidopsis lyrata HOM05D005434 ORTHO05D006412 1.1e-82 312.4 864 31.8
MBI18_g03842_MAGBIO Magnolia biondii HOM05D005434 ORTHO05D006412 2.5e-82 311.2 896 33.6
Sp4g28980 Schrenkiella parvula HOM05D005434 ORTHO05D006412 4.6e-81 307.0 861 32.1
Carub.0004s2971 Capsella rubella HOM05D005434 ORTHO05D006412 1.0e-80 305.8 865 31.4
Eucgr.K00557 Eucalyptus grandis HOM05D005434 ORTHO05D006412 1.4e-80 305.4 859 32.2
DCAR_002941 Daucus carota HOM05D005434 ORTHO05D006412 2.3e-80 304.7 863 32.8
CARHR142350 Cardamine hirsuta HOM05D005434 ORTHO05D006412 3.9e-80 303.9 871 31.9
Thhalv10001318m.g Eutrema salsugineum HOM05D005434 ORTHO05D006412 5.1e-80 303.5 861 32.2
Aqoxy2G02439 Aquilegia oxysepala HOM05D005434 ORTHO05D006412 8.8e-80 302.8 894 32.7
GSVIVG01028240001 Vitis vinifera HOM05D005434 ORTHO05D006412 1.4e-77 295.4 626 41.5
Migut.D00008 Erythranthe guttata HOM05D005434 ORTHO05D006412 1.0e-75 289.3 877 31.8
PSO210G4596 Papaver somniferum HOM05D005434 ORTHO05D006412 1.7e-75 288.5 961 30.2
Aa31LG1G28350 Aethionema arabicum HOM05D005434 ORTHO05D006412 3.8e-75 287.3 876 31.5
Oeu052591.1 Olea europaea HOM05D005434 ORTHO05D006412 5.5e-74 283.5 777 33.6
TWI23G0760 Tripterygium wilfordii HOM05D005434 ORTHO05D006412 6.1e-73 280.0 659 35.8
C04p00990 Brassica napus HOM05D005434 ORTHO05D006412 5.1e-72 276.9 859 31.3
BraA05t19085Z Brassica rapa HOM05D005434 ORTHO05D006412 2.0e-71 275.0 888 30.6
CSS0010810 Camellia sinensis var. sinensis HOM05D005434 ORTHO05D006412 3.1e-69 267.7 625 36.3
Solyc01g079080.3 Solanum lycopersicum HOM05D005434 ORTHO05D006412 5.0e-67 260.4 893 31.1
Sopen01g030590 Solanum pennellii HOM05D005434 ORTHO05D006412 5.0e-67 260.4 893 31.2
MBI19_g04828_MAGBIO Magnolia biondii HOM05D005434 ORTHO05D006412 2.1e-65 255.0 871 33.8
PGSC0003DMG400001122 Solanum tuberosum HOM05D005434 ORTHO05D006412 3.6e-65 254.2 889 30.1
BcaC02g12826 Brassica carinata HOM05D005434 ORTHO05D006412 1.1e-63 249.2 864 29.7
Cc01_g21750 Coffea canephora HOM05D005434 ORTHO05D006412 2.0e-63 248.4 879 30.8
ECA247G2130 Erigeron canadensis HOM05D005434 ORTHO05D008082 1.7e-62 245.4 874 29.7
BolC4t21751H Brassica oleracea HOM05D005434 ORTHO05D006412 7.0e-61 240.0 851 29.7
Lsat_1_v5_gn_9_7120 Lactuca sativa HOM05D005434 ORTHO05D006412 1.2e-60 239.2 875 29.1
CAN.G179.30 Capsicum annuum HOM05D005434 ORTHO05D006412 1.6e-60 238.8 901 29.6
Peaxi162Scf00309g00625 Petunia axillaris HOM05D005434 ORTHO05D006412 2.0e-60 238.4 883 30.9
A05p00820 Brassica napus HOM05D005434 ORTHO05D006412 3.6e-57 227.6 810 29.5
Nitab4.5_0000222g0380 Nicotiana tabacum HOM05D005434 ORTHO05D006412 6.1e-57 226.9 883 29.2
Dinv33176 Davidia involucrata HOM05D005434 ORTHO05D006412 5.2e-56 223.8 425 41.4
Lj1A7G43 Lonicera japonica HOM05D005434 ORTHO05D006412 2.6e-55 221.5 236 51.3
EL10Ac4g10377 Beta vulgaris HOM05D005434 ORTHO05D006412 1.8e-53 215.3 843 29.2
Nitab4.5_0003092g0060 Nicotiana tabacum HOM05D005434 ORTHO05D006412 1.2e-52 212.6 940 27.4
arahy.Tifrunner.gnm1.ann1.9BA1LG Arachis hypogaea HOM05D005434 ORTHO05D006412 1.3e-51 209.1 700 30.6
AUR62011691 Chenopodium quinoa HOM05D005434 ORTHO05D006412 2.2e-51 208.4 867 29.2
BcaC02g12619 Brassica carinata HOM05D005434 ORTHO05D006412 6.5e-51 206.8 678 29.4
Actinidia25873 Actinidia chinensis HOM05D005434 ORTHO05D006412 4.0e-48 197.6 684 30.0
Lalb_Chr02g0147191 Lupinus albus HOM05D005434 ORTHO05D006412 1.2e-47 196.1 641 29.5
Sc17g0000070 Simmondsia chinensis HOM05D005434 ORTHO05D006412 5.7e-47 193.7 844 27.6
Lalb_Chr02g0147201 Lupinus albus HOM05D005434 ORTHO05D006412 2.8e-46 191.4 209 52.2
SGA_v2.0_scaffold310G48189 Striga asiatica HOM05D005434 ORTHO05D006412 3.1e-45 188.0 872 29.0
Lj1A7T44 Lonicera japonica HOM05D005434 ORTHO05D006412 5.9e-44 183.7 563 33.6
SGA_v2.0_scaffold417G51248 Striga asiatica HOM05D005434 ORTHO05D006412 9.5e-42 176.4 949 26.3
GSVIVG01028239001 Vitis vinifera HOM05D005434 ORTHO05D006412 4.7e-41 174.1 136 62.5
AUR62024551 Chenopodium quinoa HOM05D005434 ORTHO05D006412 3.4e-39 167.9 860 28.3
HPP92_011320 Vanilla planifolia HOM05D005434 ORTHO05D006412 2.9e-38 164.9 905 26.4
CiPaw.07G126400 Carya illinoinensis HOM05D005434 ORTHO05D006412 1.5e-34 152.5 141 56.0
Os10g0405500 Oryza sativa ssp. japonica HOM05D005434 ORTHO05D006412 5.8e-31 140.6 899 25.4
Dinv33178 Davidia involucrata HOM05D005434 ORTHO05D006412 1.7e-30 139.0 107 66.4
Ciclev10023478m.g Citrus clementina HOM05D005434 ORTHO05D006412 2.2e-30 138.7 99 72.7
Sc17g0000050 Simmondsia chinensis HOM05D005434 ORTHO05D006412 3.7e-30 137.9 167 47.9
Zm00001eb233800 Zea mays HOM05D005434 ORTHO05D006412 1.4e-29 136.0 743 25.3
CDE02G0039 Ceratophyllum demersum HOM05D005434 ORTHO05D006412 2.3e-27 128.6 157 45.2
BcaB07g33880 Brassica carinata HOM05D005434 ORTHO05D006412 3.6e-25 121.3 228 34.2
FAN12G4172 Fragaria x ananassa HOM05D005434 ORTHO05D006412 4.6e-20 104.4 129 45.0
Dinv33187 Davidia involucrata HOM05D005434 ORTHO05D006412 7.8e-20 103.6 304 35.2
unitig_62.g23901 Utricularia gibba HOM05D005434 ORTHO05D006412 3.9e-19 101.3 263 33.1
SEGI_30180 Sequoiadendron giganteum HOM05D005434 ORTHO05D006412 6.8e-16 90.5 241 27.0
FAN18G2209 Fragaria x ananassa HOM05D005434 ORTHO05D006412 1.3e-14 86.3 132 42.4
Dinv12077 Davidia involucrata HOM05D005434 ORTHO05D006412 2.4e-13 82.0 78 55.1
Dinv33188 Davidia involucrata HOM05D005434 ORTHO05D006412 3.2e-13 81.6 102 54.9
PGSC0003DMG400023095 Solanum tuberosum HOM05D005434 ORTHO05D007977 1.3e-11 76.3 129 38.0
BcaC01g05050 Brassica carinata HOM05D005434 ORTHO05D006412 5.1e-11 74.3 126 39.7
Sc17g0000060 Simmondsia chinensis HOM05D005434 ORTHO05D006412 8.6e-11 73.6 440 25.9
C03p30750 Brassica napus HOM05D005434 ORTHO05D011138 1.1e-10 73.2 295 28.1
FvH4_4g08230 Fragaria vesca HOM05D005434 ORTHO05D006412 1.5e-10 72.8 93 43.0
BolC3t15425H Brassica oleracea HOM05D005434 ORTHO05D006412 2.5e-10 72.0 281 27.4
Actinidia21335 Actinidia chinensis HOM05D005434 ORTHO05D006412 2.8e-09 68.6 114 43.0
HanXRQChr10g0286491 Helianthus annuus HOM05D005434 ORTHO05D006412 2.4e-08 65.5 257 27.2
Pp3c2_29340 Physcomitrium patens HOM05D022252 ORTHO05D006412 4.0e-08 64.7 190 23.2
CDE08G1326 Ceratophyllum demersum HOM05D005434 ORTHO05D006412 5.2e-08 64.3 71 47.9
AagrBONN_evm.TU.Sc2ySwM_344.3613 Anthoceros agrestis HOM05D022252 ORTHO05D006412 1.2e-07 63.2 148 30.4
Mapoly0021s0152 Marchantia polymorpha HOM05D022252 ORTHO05D006412 2.6e-07 62.0 237 23.2
A03p25810 Brassica napus HOM05D005434 ORTHO05D006412 1.7e-06 59.3 184 29.3
BraA03t11795Z Brassica rapa HOM05D005434 ORTHO05D006412 1.7e-06 59.3 184 29.3


User provided reference genes

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