Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.014G108800 Populus trichocarpa HOM05D003285 ORTHO05D003740 7.5e-42 173.3 81 100.0
Sabra14G0080100 Salix brachista HOM05D003285 ORTHO05D003740 7.7e-39 163.3 82 95.1
Sabra14G0080200 Salix brachista HOM05D003285 ORTHO05D003740 3.6e-28 127.9 82 74.4
Potri.014G108900 Populus trichocarpa HOM05D003285 ORTHO05D003740 6.8e-27 123.6 84 73.8
Sabra14G0080300 Salix brachista HOM05D003285 ORTHO05D003740 7.5e-26 120.2 84 71.4
Potri.014G109000 Populus trichocarpa HOM05D003285 ORTHO05D003740 1.4e-24 115.9 84 69.0
Manes.05G005600 Manihot esculenta HOM05D003285 ORTHO05D003740 2.7e-15 85.1 82 54.9
Manes.07G094200 Manihot esculenta HOM05D003285 ORTHO05D003740 2.7e-15 85.1 77 54.5
Manes.05G005700 Manihot esculenta HOM05D003285 ORTHO05D003740 5.0e-14 80.9 84 57.1
Potri.014G108700 Populus trichocarpa HOM05D003285 ORTHO05D003740 4.4e-10 67.8 85 49.4
Manes.01G237800 Manihot esculenta HOM05D003285 ORTHO05D003740 1.7e-09 65.9 87 41.4
BcaC02g10273 Brassica carinata HOM05D003285 ORTHO05D003740 2.2e-09 65.5 72 45.8
A04p00750 Brassica napus HOM05D003285 ORTHO05D003740 2.2e-09 65.5 72 47.2
C04p30880 Brassica napus HOM05D003285 ORTHO05D003740 2.2e-09 65.5 72 45.8
BraA04t15796Z Brassica rapa HOM05D003285 ORTHO05D003740 2.2e-09 65.5 72 47.2
BolC4t24610H Brassica oleracea HOM05D003285 ORTHO05D003740 3.7e-09 64.7 72 45.8
TWI14G0442 Tripterygium wilfordii HOM05D003285 ORTHO05D003740 3.7e-09 64.7 86 40.7
HanXRQChr08g0225811 Helianthus annuus HOM05D003285 ORTHO05D003740 6.4e-09 63.9 55 50.9
Aa31LG10G15970 Aethionema arabicum HOM05D003285 ORTHO05D003740 1.1e-08 63.2 57 54.4
Nn7g38272 Nelumbo nucifera HOM05D003285 ORTHO05D003740 1.1e-08 63.2 84 41.7
HPP92_015067 Vanilla planifolia HOM05D003285 ORTHO05D003740 1.1e-08 63.2 80 43.8
AL6G51760 Arabidopsis lyrata HOM05D003285 ORTHO05D003740 1.4e-08 62.8 49 59.2
AT4G01575 Arabidopsis thaliana HOM05D003285 ORTHO05D003740 1.4e-08 62.8 49 59.2
BcaB02g08128 Brassica carinata HOM05D003285 ORTHO05D003740 1.4e-08 62.8 78 42.3
Carub.0005s2874 Capsella rubella HOM05D003285 ORTHO05D003740 1.9e-08 62.4 56 50.0
Prupe.3G204600 Prunus persica HOM05D003285 ORTHO05D003740 1.9e-08 62.4 56 51.8
ATR0824G057 Amborella trichopoda HOM05D003285 ORTHO05D003740 2.4e-08 62.0 43 60.5
Ciclev10022908m.g Citrus clementina HOM05D003285 ORTHO05D003740 2.4e-08 62.0 81 44.4
Manes.07G094100 Manihot esculenta HOM05D003285 ORTHO05D003740 2.4e-08 62.0 88 39.8
BraA09t40819Z Brassica rapa HOM05D003285 ORTHO05D003740 3.2e-08 61.6 75 48.0
DCAR_029148 Daucus carota HOM05D003285 ORTHO05D003740 4.1e-08 61.2 54 53.7
MD09G1119600 Malus domestica HOM05D003285 ORTHO05D003740 4.1e-08 61.2 56 51.8
A09p54050 Brassica napus HOM05D003285 ORTHO05D003740 5.4e-08 60.8 75 45.3
CDE11G0266 Ceratophyllum demersum HOM05D003285 ORTHO05D003740 7.1e-08 60.5 50 58.0
PGR142G3185 Punica granatum HOM05D003285 ORTHO05D003740 7.1e-08 60.5 62 46.8
Sopen03g021760 Solanum pennellii HOM05D003285 ORTHO05D003740 7.1e-08 60.5 56 46.4
PGSC0003DMG400000552 Solanum tuberosum HOM05D003285 ORTHO05D003740 7.1e-08 60.5 56 46.4
TAR629G1225 Trochodendron aralioides HOM05D003285 ORTHO05D003740 7.1e-08 60.5 76 39.5
AT3G61980 Arabidopsis thaliana HOM05D003285 ORTHO05D003740 9.2e-08 60.1 39 64.1
BcaC02g10274 Brassica carinata HOM05D003285 ORTHO05D003740 9.2e-08 60.1 69 44.9
MD17G1110400 Malus domestica HOM05D003285 ORTHO05D003740 9.2e-08 60.1 56 50.0
Solyc03g080040.1 Solanum lycopersicum HOM05D003285 ORTHO05D003740 9.2e-08 60.1 56 46.4
THA.LOC104802105 Tarenaya hassleriana HOM05D003285 ORTHO05D003740 9.2e-08 60.1 92 42.4
Eucgr.A00973 Eucalyptus grandis HOM05D003285 ORTHO05D003740 1.2e-07 59.7 55 50.9
MBI12_g26902_MAGBIO Magnolia biondii HOM05D003285 ORTHO05D003740 1.2e-07 59.7 77 44.2
Zm00001eb152730 Zea mays HOM05D003285 ORTHO05D003740 1.2e-07 59.7 45 53.3
Zm00001eb369200 Zea mays HOM05D003285 ORTHO05D003740 1.2e-07 59.7 45 53.3
Ah.13g070960 Amaranthus hybridus HOM05D003285 ORTHO05D003740 1.6e-07 59.3 50 52.0
CSS0001679 Camellia sinensis var. sinensis HOM05D003285 ORTHO05D003740 1.6e-07 59.3 50 54.0
Ca_16834_v3 Cicer arietinum L. HOM05D003285 ORTHO05D003740 1.6e-07 59.3 59 50.8
Duzib138G1807 Durio zibethinus HOM05D003285 ORTHO05D003740 1.6e-07 59.3 57 49.1
PSO384G5091 Papaver somniferum HOM05D003285 ORTHO05D003740 1.6e-07 59.3 57 49.1
THA.LOC104825916 Tarenaya hassleriana HOM05D003285 ORTHO05D003740 1.6e-07 59.3 83 41.0
Atru.chr5.808 Acer truncatum HOM05D003285 ORTHO05D003740 2.1e-07 58.9 81 43.2
THA.LOC104801338 Tarenaya hassleriana HOM05D003285 ORTHO05D003740 2.1e-07 58.9 51 52.9
CARHR172340 Cardamine hirsuta HOM05D003285 ORTHO05D003740 2.7e-07 58.5 73 41.1
Gohir.A11G017000 Gossypium hirsutum HOM05D003285 ORTHO05D003740 2.7e-07 58.5 58 48.3
Gohir.D11G016800 Gossypium hirsutum HOM05D003285 ORTHO05D003740 2.7e-07 58.5 58 48.3
Gorai.007G017600 Gossypium raimondii HOM05D003285 ORTHO05D003740 2.7e-07 58.5 58 48.3
MD01G1231000 Malus domestica HOM05D003285 ORTHO05D003740 2.7e-07 58.5 41 61.0
Potri.015G001800 Populus trichocarpa HOM05D003285 ORTHO05D003740 2.7e-07 58.5 39 64.1
Prupe.2G321500 Prunus persica HOM05D003285 ORTHO05D003740 2.7e-07 58.5 41 61.0
QL05p047742 Quercus lobata HOM05D003285 ORTHO05D003740 2.7e-07 58.5 47 57.4
TAR375G0298 Trochodendron aralioides HOM05D003285 ORTHO05D003740 2.7e-07 58.5 82 41.5
VMungo1309G2970 Vigna mungo HOM05D003285 ORTHO05D003740 2.7e-07 58.5 54 50.0
BcaC07g40695 Brassica carinata HOM05D003285 ORTHO05D003740 3.5e-07 58.2 79 44.3
C08p36940 Brassica napus HOM05D003285 ORTHO05D003740 3.5e-07 58.2 79 44.3
Gohir.A12G118000 Gossypium hirsutum HOM05D003285 ORTHO05D003740 3.5e-07 58.2 57 47.4
Gohir.D12G121700 Gossypium hirsutum HOM05D003285 ORTHO05D003740 3.5e-07 58.2 57 47.4
Carub.0006s3562 Capsella rubella HOM05D003285 ORTHO05D003740 4.6e-07 57.8 49 55.1
COL.COLO4_14392 Corchorus olitorius HOM05D003285 ORTHO05D003740 4.6e-07 57.8 49 55.1
Gorai.001G149500 Gossypium raimondii HOM05D003285 ORTHO05D003740 4.6e-07 57.8 54 51.9
Gorai.008G132600 Gossypium raimondii HOM05D003285 ORTHO05D003740 4.6e-07 57.8 57 45.6
Aa31LG5G1300 Aethionema arabicum HOM05D003285 ORTHO05D003740 6.0e-07 57.4 39 61.5
BolC8t51270H Brassica oleracea HOM05D003285 ORTHO05D003740 6.0e-07 57.4 76 43.4
COL.COLO4_23077 Corchorus olitorius HOM05D003285 ORTHO05D003740 6.0e-07 57.4 57 47.4
Phvul.009G039700 Phaseolus vulgaris HOM05D003285 ORTHO05D003740 6.0e-07 57.4 50 52.0
Potri.014G108600 Populus trichocarpa HOM05D003285 ORTHO05D003740 6.0e-07 57.4 95 32.6
Solyc06g073020.3 Solanum lycopersicum HOM05D003285 ORTHO05D003740 6.0e-07 57.4 39 61.5
Sopen06g029370 Solanum pennellii HOM05D003285 ORTHO05D003740 6.0e-07 57.4 39 61.5
PGSC0003DMG400027024 Solanum tuberosum HOM05D003285 ORTHO05D003740 6.0e-07 57.4 39 61.5
MELO3C024848.2 Cucumis melo HOM05D003285 ORTHO05D003740 7.8e-07 57.0 39 61.5
CsaV3_4G009810 Cucumis sativus L. HOM05D003285 ORTHO05D003740 7.8e-07 57.0 39 61.5
DCAR_009103 Daucus carota HOM05D003285 ORTHO05D003740 7.8e-07 57.0 39 61.5
DCAR_017045 Daucus carota HOM05D003285 ORTHO05D003740 7.8e-07 57.0 79 39.2
MD07G1302300 Malus domestica HOM05D003285 ORTHO05D003740 7.8e-07 57.0 41 61.0
Oeu062810.1 Olea europaea HOM05D003285 ORTHO05D003740 7.8e-07 57.0 45 57.8
QL09p006144 Quercus lobata HOM05D003285 ORTHO05D003740 7.8e-07 57.0 47 55.3
Sabra02G0132500 Salix brachista HOM05D003285 ORTHO05D003740 7.8e-07 57.0 50 54.0
Sc13g0010640 Simmondsia chinensis HOM05D003285 ORTHO05D003740 7.8e-07 57.0 39 59.0
AL5G44600 Arabidopsis lyrata HOM05D003285 ORTHO05D003740 1.0e-06 56.6 39 59.0
Haze_00324 Corylus avellana HOM05D003285 ORTHO05D003740 1.0e-06 56.6 39 59.0
FvH4_6g41470 Fragaria vesca HOM05D003285 ORTHO05D003740 1.0e-06 56.6 39 64.1
FAN09G4844 Fragaria x ananassa HOM05D003285 ORTHO05D003740 1.0e-06 56.6 39 64.1
FAN14G1926 Fragaria x ananassa HOM05D003285 ORTHO05D000521 1.0e-06 56.6 39 64.1
RcHm_v2.0_Chr2g0157141 Rosa chinensis HOM05D003285 ORTHO05D003740 1.0e-06 56.6 39 64.1
Sp6g01490 Schrenkiella parvula HOM05D003285 ORTHO05D003740 1.0e-06 56.6 49 53.1
BcaB01g02372 Brassica carinata HOM05D003285 ORTHO05D003740 1.3e-06 56.2 39 61.5
BcaB01g02373 Brassica carinata HOM05D003285 ORTHO05D003740 1.3e-06 56.2 39 61.5
BcaC01g06810 Brassica carinata HOM05D003285 ORTHO05D003740 1.3e-06 56.2 39 61.5
A03p31560 Brassica napus HOM05D003285 ORTHO05D003740 1.3e-06 56.2 39 61.5
C03p38540 Brassica napus HOM05D003285 ORTHO05D003740 1.3e-06 56.2 39 61.5
BolC3t16127H Brassica oleracea HOM05D003285 ORTHO05D003740 1.3e-06 56.2 39 61.5
BraA03t12334Z Brassica rapa HOM05D003285 ORTHO05D003740 1.3e-06 56.2 39 61.5
CAN.G303.48 Capsicum annuum HOM05D003285 ORTHO05D003740 1.3e-06 56.2 39 64.1
CAN.G65.145 Capsicum annuum HOM05D003285 ORTHO05D003740 1.3e-06 56.2 39 61.5
Duzib133G1556 Durio zibethinus HOM05D003285 ORTHO05D003740 1.3e-06 56.2 54 50.0
FAN10G2316 Fragaria x ananassa HOM05D003285 ORTHO05D003740 1.3e-06 56.2 59 49.2
Nitab4.5_0000327g0010 Nicotiana tabacum HOM05D003285 ORTHO05D003740 1.3e-06 56.2 39 64.1
Nitab4.5_0000921g0070 Nicotiana tabacum HOM05D003285 ORTHO05D003740 1.3e-06 56.2 39 64.1
Nitab4.5_0004582g0030 Nicotiana tabacum HOM05D003285 ORTHO05D003740 1.3e-06 56.2 45 57.8
Oeu055416.1 Olea europaea HOM05D003285 ORTHO05D003740 1.3e-06 56.2 39 61.5
RcHm_v2.0_Chr1g0383241 Rosa chinensis HOM05D003285 ORTHO05D003740 1.3e-06 56.2 59 49.2
Sabra15G0001100 Salix brachista HOM05D003285 ORTHO05D003740 1.3e-06 56.2 39 61.5
Sopen12g015690 Solanum pennellii HOM05D003285 ORTHO05D003740 1.3e-06 56.2 45 57.8
Thecc.01G330000 Theobroma cacao HOM05D003285 ORTHO05D003740 1.3e-06 56.2 54 50.0
VMungo0860G0001 Vigna mungo HOM05D003285 ORTHO05D003740 1.3e-06 56.2 39 59.0
FAN02G2748 Fragaria x ananassa HOM05D003285 ORTHO05D003740 1.7e-06 55.8 80 43.8
FAN03G0131 Fragaria x ananassa HOM05D003285 ORTHO05D003740 1.7e-06 55.8 59 49.2
FAN05G2811 Fragaria x ananassa HOM05D003285 ORTHO05D003740 1.7e-06 55.8 78 43.6
FAN05G5244 Fragaria x ananassa HOM05D003285 ORTHO05D003740 1.7e-06 55.8 78 43.6
Gohir.A07G133000 Gossypium hirsutum HOM05D003285 ORTHO05D003740 1.7e-06 55.8 51 52.9
Sed0005285 Sechium edule HOM05D003285 ORTHO05D003740 1.7e-06 55.8 39 61.5
Thecc.03G211400 Theobroma cacao HOM05D003285 ORTHO05D003740 1.7e-06 55.8 44 54.5
BcaC07g42624 Brassica carinata HOM05D003285 ORTHO05D003740 2.3e-06 55.5 76 42.1
CSS0006312 Camellia sinensis var. sinensis HOM05D003285 ORTHO05D003740 2.3e-06 55.5 82 41.5
Cc03_g11320 Coffea canephora HOM05D003285 ORTHO05D003740 2.3e-06 55.5 45 53.3
Thhalv10006320m.g Eutrema salsugineum HOM05D003285 ORTHO05D003740 2.3e-06 55.5 39 59.0
FvH4_7g33250 Fragaria vesca HOM05D003285 ORTHO05D003740 2.3e-06 55.5 59 49.2
FAN10G0895 Fragaria x ananassa HOM05D003285 ORTHO05D003740 2.3e-06 55.5 59 49.2
Gohir.D07G137400 Gossypium hirsutum HOM05D003285 ORTHO05D003740 2.3e-06 55.5 54 50.0
Lj1g0024603 Lotus japonicus HOM05D003285 ORTHO05D003740 2.3e-06 55.5 73 41.1
Medtr3g093240 Medicago truncatula HOM05D003285 ORTHO05D003740 2.3e-06 55.5 59 47.5
CiPaw.05G208100 Carya illinoinensis HOM05D003285 ORTHO05D003740 3.0e-06 55.1 50 52.0
HanXRQChr08g0225821 Helianthus annuus HOM05D003285 ORTHO05D003740 3.0e-06 55.1 39 59.0
PGSC0003DMG400004434 Solanum tuberosum HOM05D003285 ORTHO05D003740 3.0e-06 55.1 39 61.5
MSTRG.8551 Avicennia marina HOM05D003285 ORTHO05D003740 3.9e-06 54.7 46 54.3
CANSAT21G0620 Cannabis sativa HOM05D003285 ORTHO05D003740 3.9e-06 54.7 39 61.5
CARHR250100 Cardamine hirsuta HOM05D003285 ORTHO05D003740 3.9e-06 54.7 39 59.0
Ciclev10024059m.g Citrus clementina HOM05D003285 ORTHO05D003740 3.9e-06 54.7 39 59.0
Lalb_Chr10g0103031 Lupinus albus HOM05D003285 ORTHO05D003740 3.9e-06 54.7 52 46.2
Psat2g061520 Pisum sativum HOM05D003285 ORTHO05D003740 3.9e-06 54.7 59 40.7
SMO143G0107 Selaginella moellendorffii HOM05D003285 ORTHO05D003740 3.9e-06 54.7 63 44.4
Dinv17284 Davidia involucrata HOM05D003285 ORTHO05D003740 5.1e-06 54.3 42 57.1
Thhalv10029452m.g Eutrema salsugineum HOM05D003285 ORTHO05D003740 5.1e-06 54.3 39 59.0
PSO782G3038 Papaver somniferum HOM05D003285 ORTHO05D003740 5.1e-06 54.3 94 37.2
BcaB01g02133 Brassica carinata HOM05D003285 ORTHO05D003740 6.6e-06 53.9 39 59.0
A09p01140 Brassica napus HOM05D003285 ORTHO05D003740 6.6e-06 53.9 39 59.0
C09p01220 Brassica napus HOM05D003285 ORTHO05D003740 6.6e-06 53.9 39 59.0
BolC9t53056H Brassica oleracea HOM05D003285 ORTHO05D003740 6.6e-06 53.9 39 59.0
BraA09t35785Z Brassica rapa HOM05D003285 ORTHO05D003740 6.6e-06 53.9 39 59.0
CAN.G34.17 Capsicum annuum HOM05D003285 ORTHO05D003740 6.6e-06 53.9 39 59.0
DCAR_026758 Daucus carota HOM05D003285 ORTHO05D003740 6.6e-06 53.9 62 45.2
ECA233G5428 Erigeron canadensis HOM05D000047 ORTHO05D000044 6.6e-06 53.9 39 59.0
Lj1C1030T12 Lonicera japonica HOM05D003285 ORTHO05D003740 6.6e-06 53.9 39 59.0
Medtr5g068760 Medicago truncatula HOM05D003285 ORTHO05D003740 6.6e-06 53.9 59 44.1
Potri.002G182800 Populus trichocarpa HOM05D003285 ORTHO05D003740 6.6e-06 53.9 79 39.2
SalBow2G0415 Salvia bowleyana HOM05D003285 ORTHO05D003740 6.6e-06 53.9 39 59.0
SalBow4G0988 Salvia bowleyana HOM05D003285 ORTHO05D003740 6.6e-06 53.9 39 59.0
SalBow7G2502 Salvia bowleyana HOM05D003285 ORTHO05D003740 6.6e-06 53.9 39 59.0
vmacro10170 Vaccinium macrocarpon HOM05D003285 ORTHO05D003740 6.6e-06 53.9 43 55.8
BcaC04g24084 Brassica carinata HOM05D003285 ORTHO05D003740 8.6e-06 53.5 39 59.0
Cfa016138 Carpinus fangiana HOM05D003285 ORTHO05D003740 8.6e-06 53.5 39 59.0
CiPaw.06G038900 Carya illinoinensis HOM05D003285 ORTHO05D003740 8.6e-06 53.5 39 59.0
Duzib068G0147 Durio zibethinus HOM05D003285 ORTHO05D003740 8.6e-06 53.5 44 54.5
Duzib205G0511 Durio zibethinus HOM05D003285 ORTHO05D003740 8.6e-06 53.5 44 54.5


User provided reference genes

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