Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.014G105250 Populus trichocarpa HOM05D007503 ORTHO05D009487 8.5e-35 149.8 78 100.0
Sabra14G0077600 Salix brachista HOM05D007503 ORTHO05D009487 7.7e-28 126.7 78 85.9
Sabra02G0134700 Salix brachista HOM05D007503 ORTHO05D009487 5.7e-23 110.5 76 71.1
Hma1.2p1_0123F.1_g057900 Hydrangea macrophylla HOM05D007503 ORTHO05D009487 8.6e-19 96.7 67 71.6
GSVIVG01010020001 Vitis vinifera HOM05D007503 ORTHO05D009487 1.1e-18 96.3 66 72.7
Rhsim01G0105600 Rhododendron simsii HOM05D007503 ORTHO05D009487 2.5e-18 95.1 68 70.6
vmacro20740 Vaccinium macrocarpon HOM05D007503 ORTHO05D009487 3.3e-18 94.7 68 69.1
Actinidia06811 Actinidia chinensis HOM05D007503 ORTHO05D009487 9.5e-18 93.2 66 69.7
Manes.01G240301 Manihot esculenta HOM05D007503 ORTHO05D009487 9.5e-18 93.2 79 63.3
Hund06856 Selenicereus undatus HOM05D007503 ORTHO05D009487 1.6e-17 92.4 66 72.7
Haze_14049 Corylus avellana HOM05D007503 ORTHO05D009487 2.8e-17 91.7 66 72.7
Haze_14060 Corylus avellana HOM05D007503 ORTHO05D009487 2.8e-17 91.7 66 72.7
Dinv06977 Davidia involucrata HOM05D007503 ORTHO05D009487 3.6e-17 91.3 64 70.3
FAN26G0784 Fragaria x ananassa HOM05D000757 ORTHO05D000622 3.6e-17 91.3 72 65.3
Nn1g09784 Nelumbo nucifera HOM05D007503 ORTHO05D009487 3.6e-17 91.3 63 74.6
CiPaw.03G009100 Carya illinoinensis HOM05D007503 ORTHO05D009487 4.7e-17 90.9 65 69.2
FvH4_1g27230 Fragaria vesca HOM05D007503 ORTHO05D009487 1.4e-16 89.4 70 64.3
FAN19G2707 Fragaria x ananassa HOM05D007503 ORTHO05D009487 1.4e-16 89.4 70 64.3
FAN23G0073 Fragaria x ananassa HOM05D007503 ORTHO05D009487 1.4e-16 89.4 70 64.3
Prupe.3G011500 Prunus persica HOM05D007503 ORTHO05D009487 1.4e-16 89.4 69 66.7
RcHm_v2.0_Chr3g0487701 Rosa chinensis HOM05D007503 ORTHO05D009487 1.4e-16 89.4 67 68.7
DCAR_007994 Daucus carota HOM05D007503 ORTHO05D009487 5.2e-16 87.4 67 68.7
MD17G1272500 Malus domestica HOM05D007503 ORTHO05D009487 5.2e-16 87.4 69 65.2
TWI56G0335 Tripterygium wilfordii HOM05D007503 ORTHO05D009487 5.2e-16 87.4 78 61.5
Lj6g0027028 Lotus japonicus HOM05D007503 ORTHO05D009487 6.8e-16 87.0 63 68.3
DCAR_023852 Daucus carota HOM05D007503 ORTHO05D009487 8.9e-16 86.7 69 65.2
HanXRQChr02g0039651 Helianthus annuus HOM05D007503 ORTHO05D009487 8.9e-16 86.7 64 68.8
QL02p056384 Quercus lobata HOM05D007503 ORTHO05D009487 8.9e-16 86.7 69 68.1
Cc09_g03530 Coffea canephora HOM05D007503 ORTHO05D009487 1.2e-15 86.3 73 63.0
Phvul.006G084000 Phaseolus vulgaris HOM05D007503 ORTHO05D009487 2.0e-15 85.5 66 65.2
Sc09g0004610 Simmondsia chinensis HOM05D007503 ORTHO05D009487 2.0e-15 85.5 66 66.7
Glyma.18G047300 Glycine max HOM05D007503 ORTHO05D009487 3.4e-15 84.7 66 63.6
Lalb_Chr20g0117211 Lupinus albus HOM05D007503 ORTHO05D009487 3.4e-15 84.7 61 68.9
Aqoxy5G03063 Aquilegia oxysepala HOM05D007503 ORTHO05D009487 4.4e-15 84.3 61 70.5
Ciclev10013261m.g Citrus clementina HOM05D007503 ORTHO05D009487 4.4e-15 84.3 72 61.1
Glyma.11G203700 Glycine max HOM05D007503 ORTHO05D009487 4.4e-15 84.3 66 63.6
MD09G1282700 Malus domestica HOM05D007503 ORTHO05D009487 4.4e-15 84.3 69 63.8
Nitab4.5_0001653g0060 Nicotiana tabacum HOM05D007503 ORTHO05D009487 4.4e-15 84.3 58 70.7
PSO729G0165 Papaver somniferum HOM05D007503 ORTHO05D009487 4.4e-15 84.3 54 75.9
THA.LOC104815587 Tarenaya hassleriana HOM05D007503 ORTHO05D009487 4.4e-15 84.3 66 63.6
SalBow6G4878 Salvia bowleyana HOM05D007503 ORTHO05D009487 5.7e-15 84.0 73 60.3
CANSAT80G2883 Cannabis sativa HOM05D007503 ORTHO05D009487 1.3e-14 82.8 67 61.2
Thecc.09G340100 Theobroma cacao HOM05D007503 ORTHO05D009487 1.7e-14 82.4 69 62.3
BraA01t03971Z Brassica rapa HOM05D007503 ORTHO05D009487 2.2e-14 82.0 66 59.1
CDE05G2177 Ceratophyllum demersum HOM05D007503 ORTHO05D009487 2.2e-14 82.0 65 66.2
Migut.F01879 Erythranthe guttata HOM05D007503 ORTHO05D009487 2.2e-14 82.0 56 71.4
Nitab4.5_0011656g0020 Nicotiana tabacum HOM05D007503 ORTHO05D009487 2.2e-14 82.0 58 67.2
THA.LOC104822606 Tarenaya hassleriana HOM05D007503 ORTHO05D009487 2.2e-14 82.0 66 63.6
Gohir.A11G170200 Gossypium hirsutum HOM05D007503 ORTHO05D009487 2.9e-14 81.6 69 60.9
Gohir.D11G177200 Gossypium hirsutum HOM05D007503 ORTHO05D009487 2.9e-14 81.6 69 60.9
Gorai.007G189300 Gossypium raimondii HOM05D007503 ORTHO05D009487 2.9e-14 81.6 69 60.9
ECA232G1405 Erigeron canadensis HOM05D007503 ORTHO05D009487 3.7e-14 81.3 62 62.9
Duzib211G0566 Durio zibethinus HOM05D007503 ORTHO05D009487 4.9e-14 80.9 69 60.9
A01p39280 Brassica napus HOM05D007503 ORTHO05D009487 6.3e-14 80.5 66 57.6
Eucgr.I00239 Eucalyptus grandis HOM05D007503 ORTHO05D009487 8.3e-14 80.1 61 67.2
AT3G14430 Arabidopsis thaliana HOM05D007503 ORTHO05D009487 1.1e-13 79.7 66 59.1
C01p50080 Brassica napus HOM05D007503 ORTHO05D009487 1.1e-13 79.7 66 56.1
BolC1t04962H Brassica oleracea HOM05D007503 ORTHO05D009487 1.1e-13 79.7 66 56.1
Carub.0003s1415 Capsella rubella HOM05D007503 ORTHO05D009487 1.8e-13 79.0 66 57.6
COL.COLO4_13441 Corchorus olitorius HOM05D007503 ORTHO05D009487 1.8e-13 79.0 69 59.4
BcaC09g48410 Brassica carinata HOM05D007503 ORTHO05D009487 2.4e-13 78.6 66 54.5
CARHR089340 Cardamine hirsuta HOM05D007503 ORTHO05D009487 2.4e-13 78.6 74 54.1
Medtr3g063970 Medicago truncatula HOM05D007503 ORTHO05D009487 4.1e-13 77.8 56 66.1
Sp3g12730 Schrenkiella parvula HOM05D007503 ORTHO05D009487 5.4e-13 77.4 66 56.1
AL3G26810 Arabidopsis lyrata HOM05D007503 ORTHO05D009487 7.0e-13 77.0 66 57.6
BcaB06g25385 Brassica carinata HOM05D007503 ORTHO05D009487 9.2e-13 76.6 66 56.1
A05p34950 Brassica napus HOM05D007503 ORTHO05D009487 1.6e-12 75.9 67 55.2
C05p52900 Brassica napus HOM05D007503 ORTHO05D009487 1.6e-12 75.9 66 56.1
BolC5t33967H Brassica oleracea HOM05D007503 ORTHO05D009487 1.6e-12 75.9 66 56.1
BraA05t22309Z Brassica rapa HOM05D007503 ORTHO05D009487 1.6e-12 75.9 67 55.2
unitig_0.g938 Utricularia gibba HOM05D001953 ORTHO05D001904 2.0e-12 75.5 56 66.1
ClCG01G008330 Citrullus lanatus HOM05D007503 ORTHO05D009487 2.7e-12 75.1 70 57.1
Thhalv10021919m.g Eutrema salsugineum HOM05D007503 ORTHO05D009487 2.7e-12 75.1 64 57.8
BcaC05g29084 Brassica carinata HOM05D007503 ORTHO05D009487 3.5e-12 74.7 66 56.1
MELO3C025073.2 Cucumis melo HOM05D007503 ORTHO05D009487 4.6e-12 74.3 70 55.7
Nitab4.5_0002233g0020 Nicotiana tabacum HOM05D007503 ORTHO05D009487 4.6e-12 74.3 60 65.0
Sed0018329 Sechium edule HOM05D007503 ORTHO05D009487 5.9e-12 73.9 70 55.7
PGR119G1426 Punica granatum HOM05D007503 ORTHO05D009487 7.8e-12 73.6 65 61.5
CAN.G326.18 Capsicum annuum HOM05D007503 ORTHO05D009487 2.3e-11 72.0 70 58.6
CsaV3_5G020250 Cucumis sativus L. HOM05D007503 ORTHO05D009487 2.3e-11 72.0 70 54.3
Cpa.g.c46349 Carica papaya HOM05D007503 ORTHO05D009487 2.9e-11 71.6 64 59.4
Cpa.g.sc44.91 Carica papaya HOM05D007503 ORTHO05D009487 2.9e-11 71.6 64 59.4
Peaxi162Scf00253g00725 Petunia axillaris HOM05D007503 ORTHO05D009487 2.9e-11 71.6 72 54.2
Solyc03g058340.3 Solanum lycopersicum HOM05D007503 ORTHO05D009487 3.9e-11 71.2 70 57.1
Sopen03g015570 Solanum pennellii HOM05D007503 ORTHO05D009487 3.9e-11 71.2 70 57.1
Zm00001eb175060 Zea mays HOM05D007503 ORTHO05D009487 3.9e-11 71.2 56 64.3
Zm00001eb036330 Zea mays HOM05D007503 ORTHO05D009487 8.6e-11 70.1 49 69.4
Aa31LG8G1690 Aethionema arabicum HOM05D007503 ORTHO05D009487 1.1e-10 69.7 66 51.5
Os08g0528601 Oryza sativa ssp. japonica HOM05D007503 ORTHO05D009487 1.6e-09 65.9 65 58.5
Pp3c11_25150 Physcomitrium patens HOM05D007503 ORTHO05D009487 1.8e-08 62.4 50 62.0
CSS0042421 Camellia sinensis var. sinensis HOM05D007503 ORTHO05D009487 2.2e-06 55.5 41 73.2
Pp3c7_7140 Physcomitrium patens HOM05D007503 ORTHO05D009487 3.7e-06 54.7 50 56.0
TAR392G0002 Trochodendron aralioides HOM05D007503 ORTHO05D009487 4.9e-06 54.3 44 68.2
Aa31LG10G1620 Aethionema arabicum HOM05D007503 ORTHO05D009487 6.4e-06 53.9 69 43.5


User provided reference genes

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