Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.014G102600 Populus trichocarpa HOM05D007199 ORTHO05D007257 6.2e-141 504.2 271 100.0
Potri.002G175300 Populus trichocarpa HOM05D007199 ORTHO05D007257 2.4e-92 342.8 250 79.2
Manes.05G019000 Manihot esculenta HOM05D007199 ORTHO05D007257 3.9e-79 298.9 289 66.4
Manes.01G254801 Manihot esculenta HOM05D007199 ORTHO05D007257 4.4e-70 268.9 301 60.5
Sabra14G0075600 Salix brachista HOM05D007199 ORTHO05D007257 2.0e-67 260.0 266 57.9
Haze_15700 Corylus avellana HOM05D007199 ORTHO05D007257 1.2e-62 244.2 301 53.2
Thecc.01G336800 Theobroma cacao HOM05D007199 ORTHO05D007257 1.2e-59 234.2 293 54.6
Duzib138G1694 Durio zibethinus HOM05D007199 ORTHO05D007257 2.0e-59 233.4 302 53.0
QL08p046296 Quercus lobata HOM05D007199 ORTHO05D007257 7.7e-59 231.5 290 51.4
CiPaw.02G043300 Carya illinoinensis HOM05D007199 ORTHO05D007257 1.0e-58 231.1 286 50.3
Ciclev10024292m.g Citrus clementina HOM05D007199 ORTHO05D007257 9.5e-57 224.6 285 49.1
Duzib133G0933 Durio zibethinus HOM05D007199 ORTHO05D007257 6.8e-55 218.4 318 47.8
VMungo0331G0932 Vigna mungo HOM05D007199 ORTHO05D007257 1.3e-53 214.2 282 45.0
Atru.chr5.734 Acer truncatum HOM05D007199 ORTHO05D007257 1.1e-52 211.1 293 52.2
Phvul.010G116850 Phaseolus vulgaris HOM05D007199 ORTHO05D007257 4.1e-52 209.1 283 45.9
Phvul.010G116900 Phaseolus vulgaris HOM05D007199 ORTHO05D007257 4.1e-52 209.1 283 45.9
Dinv32625 Davidia involucrata HOM05D007199 ORTHO05D007257 4.5e-51 205.7 285 47.7
TWI23G0381 Tripterygium wilfordii HOM05D007199 ORTHO05D007257 7.8e-51 204.9 304 45.1
Gohir.D11G103900 Gossypium hirsutum HOM05D007199 ORTHO05D007257 1.3e-50 204.1 284 49.6
Gorai.007G111200 Gossypium raimondii HOM05D007199 ORTHO05D007257 1.7e-50 203.8 285 49.1
Prupe.2G194000 Prunus persica HOM05D007199 ORTHO05D007257 2.3e-50 203.4 308 44.8
Gohir.A11G099400 Gossypium hirsutum HOM05D007199 ORTHO05D007257 1.1e-49 201.1 285 48.4
Glyma.07G052500 Glycine max HOM05D007199 ORTHO05D007257 1.9e-49 200.3 263 45.6
Lj3g0002992 Lotus japonicus HOM05D007199 ORTHO05D007257 3.6e-48 196.1 301 41.5
CiPaw.01G079500 Carya illinoinensis HOM05D007199 ORTHO05D007257 4.7e-48 195.7 311 48.2
TWI14G0585 Tripterygium wilfordii HOM05D007199 ORTHO05D007257 8.0e-48 194.9 311 43.7
MD00G1035800 Malus domestica HOM05D007199 ORTHO05D007257 4.0e-47 192.6 308 45.5
Glyma.16G021400 Glycine max HOM05D007199 ORTHO05D007257 8.9e-47 191.4 290 43.8
Cpa.g.sc144.10 Carica papaya HOM05D007199 ORTHO05D007257 1.2e-46 191.0 312 41.7
GSVIVG01027402001 Vitis vinifera HOM05D007199 ORTHO05D007257 3.4e-46 189.5 297 50.2
RcHm_v2.0_Chr1g0360641 Rosa chinensis HOM05D007199 ORTHO05D007257 9.8e-46 188.0 255 49.0
Lalb_Chr15g0076391 Lupinus albus HOM05D007199 ORTHO05D007257 9.2e-44 181.4 256 43.0
Gohir.D08G145100 Gossypium hirsutum HOM05D007199 ORTHO05D007257 3.5e-43 179.5 243 48.6
Gorai.004G150000 Gossypium raimondii HOM05D007199 ORTHO05D007257 3.5e-43 179.5 243 48.6
Gohir.A08G124000 Gossypium hirsutum HOM05D007199 ORTHO05D007257 2.3e-42 176.8 243 47.7
MD07G1155200 Malus domestica HOM05D007199 ORTHO05D007257 3.0e-42 176.4 308 42.2
Eucgr.E00024 Eucalyptus grandis HOM05D007199 ORTHO05D007257 3.9e-42 176.0 293 42.3
FvH4_7g17280 Fragaria vesca HOM05D007199 ORTHO05D007257 1.9e-41 173.7 248 46.0
FAN10G2445 Fragaria x ananassa HOM05D007199 ORTHO05D007257 1.9e-41 173.7 255 45.9
FAN10G3440 Fragaria x ananassa HOM05D007199 ORTHO05D007257 1.9e-41 173.7 255 45.9
Dinv34240 Davidia involucrata HOM05D007199 ORTHO05D007257 3.3e-41 172.9 297 45.5
TAR629G0242 Trochodendron aralioides HOM05D007199 ORTHO05D007257 4.3e-41 172.6 260 44.6
FAN06G3172 Fragaria x ananassa HOM05D007199 ORTHO05D007257 5.6e-41 172.2 248 45.6
Medtr8g027100 Medicago truncatula HOM05D007199 ORTHO05D007257 7.3e-41 171.8 289 41.9
TPR.G15900 Trifolium pratense HOM05D007199 ORTHO05D007257 9.5e-41 171.4 258 44.2
FAN03G0194 Fragaria x ananassa HOM05D007199 ORTHO05D007257 1.2e-40 171.0 255 45.5
MELO3C022248.2 Cucumis melo HOM05D007199 ORTHO05D007257 2.8e-40 169.9 243 51.0
FAN01G2057 Fragaria x ananassa HOM05D007199 ORTHO05D007257 1.8e-39 167.2 255 45.1
Lalb_Chr10g0100741 Lupinus albus HOM05D007199 ORTHO05D007257 6.8e-39 165.2 288 36.8
CsaV3_6G008960 Cucumis sativus L. HOM05D007199 ORTHO05D007257 8.9e-39 164.9 244 50.8
Nn1g00376 Nelumbo nucifera HOM05D007199 ORTHO05D007257 1.5e-38 164.1 284 41.9
THA.LOC104802086 Tarenaya hassleriana HOM05D007199 ORTHO05D007257 7.5e-38 161.8 293 43.7
Psat4g216200 Pisum sativum HOM05D007199 ORTHO05D007257 2.2e-37 160.2 292 39.0
TAR375G0146 Trochodendron aralioides HOM05D007199 ORTHO05D007257 5.4e-36 155.6 296 41.2
Nitab4.5_0002638g0020 Nicotiana tabacum HOM05D007199 ORTHO05D007257 2.1e-35 153.7 288 39.2
THA.LOC104817388 Tarenaya hassleriana HOM05D007199 ORTHO05D007257 2.1e-35 153.7 296 38.9
Sed0010537 Sechium edule HOM05D007199 ORTHO05D007257 4.6e-35 152.5 297 40.4
Hma1.2p1_0309F.1_g120450 Hydrangea macrophylla HOM05D007199 ORTHO05D007257 1.9e-33 147.1 304 42.1
Ca_23498_v3 Cicer arietinum L. HOM05D007199 ORTHO05D007257 6.2e-32 142.1 269 39.8
arahy.Tifrunner.gnm1.ann1.WJU08E Arachis hypogaea HOM05D007199 ORTHO05D007257 8.9e-31 138.3 210 48.6
ClCG06G002790 Citrullus lanatus HOM05D007199 ORTHO05D007257 2.0e-30 137.1 242 47.1
CSS0043385 Camellia sinensis var. sinensis HOM05D007199 ORTHO05D007257 7.5e-30 135.2 269 42.8
arahy.Tifrunner.gnm1.ann1.A7IBVM Arachis hypogaea HOM05D007199 ORTHO05D007257 4.9e-29 132.5 308 33.4
Gohir.A12G114200 Gossypium hirsutum HOM05D007199 ORTHO05D007257 1.1e-28 131.3 235 41.3
MSTRG.17369 Avicennia marina HOM05D007199 ORTHO05D007257 1.9e-28 130.6 258 44.2
Solyc10g009320.3 Solanum lycopersicum HOM05D007199 ORTHO05D007257 1.9e-28 130.6 263 39.9
Sopen10g005110 Solanum pennellii HOM05D007199 ORTHO05D007257 1.9e-28 130.6 272 41.9
arahy.Tifrunner.gnm1.ann1.GEK5Z0 Arachis hypogaea HOM05D007199 ORTHO05D007257 2.4e-28 130.2 209 47.8
Actinidia28100 Actinidia chinensis HOM05D007199 ORTHO05D007257 7.1e-28 128.6 264 34.8
CANSAT56G1498 Cannabis sativa HOM05D007199 ORTHO05D007257 2.1e-27 127.1 272 37.5
CSS0044672 Camellia sinensis var. sinensis HOM05D007199 ORTHO05D007257 4.6e-27 125.9 239 43.9
PGSC0003DMG400005529 Solanum tuberosum HOM05D007199 ORTHO05D007257 1.7e-26 124.0 264 40.9
Rhsim01G0176600 Rhododendron simsii HOM05D007199 ORTHO05D007257 1.9e-25 120.6 269 37.2
Lj9C602T4 Lonicera japonica HOM05D007199 ORTHO05D007257 3.3e-25 119.8 230 37.0
CARHR141980 Cardamine hirsuta HOM05D012720 ORTHO05D007257 5.6e-25 119.0 294 36.4
COL.COLO4_06259 Corchorus olitorius HOM05D007199 ORTHO05D007257 4.7e-24 115.9 122 56.6
BolC4t21784H Brassica oleracea HOM05D012720 ORTHO05D007257 8.1e-24 115.2 302 34.4
BcaB01g03200 Brassica carinata HOM05D012720 ORTHO05D007257 1.1e-23 114.8 298 35.6
Aa31LG1G28040 Aethionema arabicum HOM05D007199 ORTHO05D007257 2.4e-23 113.6 261 33.7
BcaC02g12658 Brassica carinata HOM05D012720 ORTHO05D007257 2.4e-23 113.6 304 35.9
A05p01150 Brassica napus HOM05D012720 ORTHO05D007257 5.2e-23 112.5 303 33.7
BraA05t19115Z Brassica rapa HOM05D012720 ORTHO05D007257 5.2e-23 112.5 302 33.8
AUR62008640 Chenopodium quinoa HOM05D021513 ORTHO05D007257 3.4e-22 109.8 282 34.4
HanXRQChr04g0120361 Helianthus annuus HOM05D007199 ORTHO05D007257 5.8e-22 109.0 257 33.9
Thhalv10001576m.g Eutrema salsugineum HOM05D012720 ORTHO05D007257 1.7e-21 107.5 269 34.6
AL4G46070 Arabidopsis lyrata HOM05D012720 ORTHO05D007257 3.8e-21 106.3 262 34.4
PSO782G1188 Papaver somniferum HOM05D007199 ORTHO05D007257 3.8e-21 106.3 270 34.1
AT2G46640 Arabidopsis thaliana HOM05D012720 ORTHO05D007257 1.1e-20 104.8 276 36.2
arahy.Tifrunner.gnm1.ann1.P1IKWH Arachis hypogaea HOM05D007199 ORTHO05D007257 1.9e-20 104.0 307 31.6
Peaxi162Scf00087g00199 Petunia axillaris HOM05D007199 ORTHO05D007257 3.2e-20 103.2 263 36.9
Nitab4.5_0014168g0010 Nicotiana tabacum HOM05D007199 ORTHO05D007257 5.4e-20 102.4 240 39.2
Oeu022158.1 Olea europaea HOM05D007199 ORTHO05D007257 1.6e-19 100.9 217 37.3
Aqoxy5G04262 Aquilegia oxysepala HOM05D007199 ORTHO05D007257 4.6e-19 99.4 252 35.3
C04p01310 Brassica napus HOM05D012720 ORTHO05D007257 1.3e-18 97.8 291 33.3
Sopen01g040020 Solanum pennellii HOM05D007199 ORTHO05D007257 1.3e-18 97.8 253 36.4
PGSC0003DMG400000126 Solanum tuberosum HOM05D007199 ORTHO05D007257 5.1e-18 95.9 249 36.5
Sp4g28690 Schrenkiella parvula HOM05D012720 ORTHO05D007257 6.6e-18 95.5 281 33.8
BcaC02g07047 Brassica carinata HOM05D012720 ORTHO05D007257 1.9e-17 94.0 276 33.3
Nitab4.5_0000917g0050 Nicotiana tabacum HOM05D007199 ORTHO05D007257 3.3e-17 93.2 185 38.4
EL10Ac1g00217 Beta vulgaris HOM05D021513 ORTHO05D007257 5.6e-17 92.4 317 29.7
Actinidia25657 Actinidia chinensis HOM05D007199 ORTHO05D007257 2.1e-16 90.5 172 36.0
AUR62033124 Chenopodium quinoa HOM05D021513 ORTHO05D007257 2.1e-16 90.5 222 34.2
Solyc01g096260.4 Solanum lycopersicum HOM05D007199 ORTHO05D007257 2.1e-16 90.5 251 35.1
Carub.0004s2935 Capsella rubella HOM05D012720 ORTHO05D007257 4.7e-16 89.4 259 34.7
DCAR_006984 Daucus carota HOM05D007199 ORTHO05D007257 4.7e-16 89.4 269 32.3
Lsat_1_v5_gn_4_32721 Lactuca sativa HOM05D007199 ORTHO05D007257 8.1e-16 88.6 261 31.8
ATR0620G133 Amborella trichopoda HOM05D007199 ORTHO05D007257 1.4e-15 87.8 237 33.8
ECA236G3069 Erigeron canadensis HOM05D007199 ORTHO05D007257 1.4e-15 87.8 282 29.4
CDE09G0027 Ceratophyllum demersum HOM05D007199 ORTHO05D007257 3.1e-15 86.7 278 32.0
CDE11G0583 Ceratophyllum demersum HOM05D007199 ORTHO05D007257 3.1e-15 86.7 276 32.2
MBI12_g13712_MAGBIO Magnolia biondii HOM05D007199 ORTHO05D007257 4.0e-15 86.3 267 30.3
Ah.15g093270 Amaranthus hybridus HOM05D021513 ORTHO05D007257 5.3e-15 85.9 251 33.5
vmacro12588 Vaccinium macrocarpon HOM05D007199 ORTHO05D007257 6.9e-15 85.5 214 36.0
EL10Ac7g17504 Beta vulgaris HOM05D021513 ORTHO05D007257 9.9e-14 81.6 259 32.4
HanXRQChr16g0524641 Helianthus annuus HOM05D007199 ORTHO05D007257 9.9e-14 81.6 247 30.8
DCAR_002988 Daucus carota HOM05D007199 ORTHO05D007257 4.9e-13 79.3 222 33.3
SalBow5G5634 Salvia bowleyana HOM05D007199 ORTHO05D007257 6.4e-13 79.0 241 29.9
Hund16734 Selenicereus undatus HOM05D007199 ORTHO05D007257 5.4e-12 75.9 222 30.2
Sc23g0001940 Simmondsia chinensis HOM05D007199 ORTHO05D007257 1.1e-09 68.2 257 28.4
Gorai.008G127500 Gossypium raimondii HOM05D007199 ORTHO05D007257 1.5e-09 67.8 111 41.4
PGR042G0368 Punica granatum HOM05D007199 ORTHO05D007257 1.5e-09 67.8 323 29.4
MBI04_g33415_MAGBIO Magnolia biondii HOM05D007199 ORTHO05D007257 1.9e-09 67.4 149 36.2
CDE02G0206 Ceratophyllum demersum HOM05D056078 ORTHO05D007257 5.6e-09 65.9 254 26.8
Peaxi162Scf00767g00113 Petunia axillaris HOM05D007199 ORTHO05D007257 1.4e-07 61.2 210 31.9
Cc02_g39760 Coffea canephora HOM05D007199 ORTHO05D007257 5.3e-07 59.3 367 32.2
SGA_v2.0_scaffold581G53044 Striga asiatica HOM05D006631 ORTHO05D008359 1.5e-06 57.8 249 30.5
AUR62044261 Chenopodium quinoa HOM05D021513 ORTHO05D007257 2.0e-06 57.4 163 31.3


User provided reference genes

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