Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.014G101400 Populus trichocarpa HOM05D006425 ORTHO05D007312 0.0e+00 2176.0 1089 100.0
Sabra14G0074600 Salix brachista HOM05D006425 ORTHO05D007312 0.0e+00 2081.2 1095 94.8
Manes.01G243600 Manihot esculenta HOM05D006425 ORTHO05D007312 0.0e+00 1781.1 1090 81.2
Atru.chr5.713 Acer truncatum HOM05D006425 ORTHO05D007312 0.0e+00 1764.6 1093 80.5
Cfa003773 Carpinus fangiana HOM05D006425 ORTHO05D007312 0.0e+00 1746.1 1089 79.4
QL08p046032 Quercus lobata HOM05D006425 ORTHO05D007312 0.0e+00 1728.0 1072 79.5
Haze_15687 Corylus avellana HOM05D006425 ORTHO05D007312 0.0e+00 1720.7 1121 76.8
TWI23G0835 Tripterygium wilfordii HOM05D006425 ORTHO05D007312 0.0e+00 1700.3 1087 77.4
Thecc.01G338700 Theobroma cacao HOM05D006425 ORTHO05D007312 0.0e+00 1699.9 1085 77.7
MD07G1153800 Malus domestica HOM05D006425 ORTHO05D007312 0.0e+00 1698.3 1088 77.3
Duzib138G0057 Durio zibethinus HOM05D006425 ORTHO05D007312 0.0e+00 1687.9 1086 77.0
CSS0033565 Camellia sinensis var. sinensis HOM05D006425 ORTHO05D007312 0.0e+00 1681.0 1090 77.1
Cpa.g.sc139.7 Carica papaya HOM05D006425 ORTHO05D007312 0.0e+00 1669.8 1092 75.9
RcHm_v2.0_Chr1g0360431 Rosa chinensis HOM05D006425 ORTHO05D007312 0.0e+00 1664.4 1085 76.4
FvH4_7g17030 Fragaria vesca HOM05D006425 ORTHO05D007312 0.0e+00 1661.7 1086 75.9
Dinv34229 Davidia involucrata HOM05D006425 ORTHO05D007312 0.0e+00 1655.2 1074 77.1
CsaV3_3G007870 Cucumis sativus L. HOM05D006425 ORTHO05D007312 0.0e+00 1654.4 1090 75.2
GSVIVG01027188001 Vitis vinifera HOM05D006425 ORTHO05D007312 0.0e+00 1651.7 1093 75.0
Sed0010112 Sechium edule HOM05D006425 ORTHO05D007312 0.0e+00 1646.3 1084 75.1
Eucgr.E03445 Eucalyptus grandis HOM05D006425 ORTHO05D007312 0.0e+00 1643.2 1075 75.3
arahy.Tifrunner.gnm1.ann1.V6VX4F Arachis hypogaea HOM05D006425 ORTHO05D007312 0.0e+00 1642.1 1112 73.8
COL.COLO4_06242 Corchorus olitorius HOM05D006425 ORTHO05D007312 0.0e+00 1637.1 1105 74.4
Gohir.D12G117200 Gossypium hirsutum HOM05D006425 ORTHO05D007312 0.0e+00 1636.3 1086 75.1
Lj7C496T17 Lonicera japonica HOM05D006425 ORTHO05D007312 0.0e+00 1635.5 1092 74.4
Gorai.008G127000 Gossypium raimondii HOM05D006425 ORTHO05D007312 0.0e+00 1634.4 1086 75.0
TAR629G2477 Trochodendron aralioides HOM05D006425 ORTHO05D007312 0.0e+00 1634.4 1085 75.4
FAN10G2644 Fragaria x ananassa HOM05D006425 ORTHO05D007312 0.0e+00 1629.0 1075 75.4
VMungo0540G0548 Vigna mungo HOM05D006425 ORTHO05D007312 0.0e+00 1622.8 1084 74.4
FAN06G4481 Fragaria x ananassa HOM05D006425 ORTHO05D007312 0.0e+00 1622.1 1076 75.5
FAN10G4300 Fragaria x ananassa HOM05D006425 ORTHO05D007312 0.0e+00 1622.1 1083 74.9
TPR.G4756 Trifolium pratense HOM05D006425 ORTHO05D007312 0.0e+00 1620.5 1080 74.2
Lj1g0017915 Lotus japonicus HOM05D006425 ORTHO05D007312 0.0e+00 1618.6 1077 74.7
Phvul.006G115200 Phaseolus vulgaris HOM05D006425 ORTHO05D007312 0.0e+00 1618.6 1087 73.9
Glyma.19G257700 Glycine max HOM05D006425 ORTHO05D007312 0.0e+00 1614.7 1083 74.1
Sp1g01070 Schrenkiella parvula HOM05D006425 ORTHO05D007312 0.0e+00 1609.0 1083 74.1
FAN06G3842 Fragaria x ananassa HOM05D006425 ORTHO05D007312 0.0e+00 1605.9 1077 74.8
Ca_09524_v3 Cicer arietinum L. HOM05D006425 ORTHO05D007312 0.0e+00 1605.5 1079 73.2
FAN01G0442 Fragaria x ananassa HOM05D006425 ORTHO05D007312 0.0e+00 1604.7 1075 74.9
FAN03G0670 Fragaria x ananassa HOM05D006425 ORTHO05D007312 0.0e+00 1604.7 1074 74.9
Thhalv10006637m.g Eutrema salsugineum HOM05D006425 ORTHO05D007312 0.0e+00 1604.0 1077 74.1
Lalb_Chr04g0261441 Lupinus albus HOM05D006425 ORTHO05D007312 0.0e+00 1603.6 1079 74.1
PGR102G0287 Punica granatum HOM05D006425 ORTHO05D007312 0.0e+00 1602.4 1088 73.6
THA.LOC104815884 Tarenaya hassleriana HOM05D006425 ORTHO05D007312 0.0e+00 1602.4 1077 72.6
Glyma.03G259000 Glycine max HOM05D006425 ORTHO05D007312 0.0e+00 1601.6 1087 73.0
AL1G11260 Arabidopsis lyrata HOM05D006425 ORTHO05D007312 0.0e+00 1599.3 1074 73.8
arahy.Tifrunner.gnm1.ann1.GF075D Arachis hypogaea HOM05D006425 ORTHO05D007312 0.0e+00 1598.2 1119 72.2
Oeu007875.1 Olea europaea HOM05D006425 ORTHO05D007312 0.0e+00 1595.5 1092 72.6
Rhsim07G0002300 Rhododendron simsii HOM05D006425 ORTHO05D007312 0.0e+00 1593.6 1081 74.1
CARHR001250 Cardamine hirsuta HOM05D006425 ORTHO05D007312 0.0e+00 1590.9 1079 73.2
A09p69000 Brassica napus HOM05D006425 ORTHO05D007312 0.0e+00 1587.0 1079 73.3
Nn1g00347 Nelumbo nucifera HOM05D006425 ORTHO05D007312 0.0e+00 1585.1 1088 71.8
BraA09t42237Z Brassica rapa HOM05D006425 ORTHO05D007312 0.0e+00 1581.6 1080 73.1
Psat3g001600 Pisum sativum HOM05D006425 ORTHO05D007312 0.0e+00 1581.2 1079 72.4
C08p53570 Brassica napus HOM05D006425 ORTHO05D007312 0.0e+00 1578.5 1077 72.9
BolC8t52871H Brassica oleracea HOM05D006425 ORTHO05D007312 0.0e+00 1575.5 1077 72.9
Aqoxy5G04315 Aquilegia oxysepala HOM05D006425 ORTHO05D007312 0.0e+00 1572.8 1081 72.0
Medtr7g117870 Medicago truncatula HOM05D006425 ORTHO05D007312 0.0e+00 1571.6 1080 71.7
Carub.0008s1137 Capsella rubella HOM05D006425 ORTHO05D007312 0.0e+00 1569.3 1081 71.9
PSO782G0220 Papaver somniferum HOM05D006425 ORTHO05D007312 0.0e+00 1558.5 1080 71.9
PGSC0003DMG400000238 Solanum tuberosum HOM05D006425 ORTHO05D007312 0.0e+00 1558.1 1088 71.5
MELO3C006005.2 Cucumis melo HOM05D006425 ORTHO05D007312 0.0e+00 1557.3 1089 72.2
ECA236G2333 Erigeron canadensis HOM05D006425 ORTHO05D007312 0.0e+00 1552.7 1069 72.2
CAN.G1415.13 Capsicum annuum HOM05D006425 ORTHO05D007312 0.0e+00 1552.3 1085 71.3
Solyc01g096160.4 Solanum lycopersicum HOM05D006425 ORTHO05D007312 0.0e+00 1550.0 1088 71.7
Sc13g0006630 Simmondsia chinensis HOM05D006425 ORTHO05D007312 0.0e+00 1549.6 1078 70.8
PSO063G5968 Papaver somniferum HOM05D006425 ORTHO05D007312 0.0e+00 1548.5 1085 71.5
MBI12_g20265_MAGBIO Magnolia biondii HOM05D006425 ORTHO05D007312 0.0e+00 1548.1 1090 71.2
Ciclev10018702m.g Citrus clementina HOM05D006425 ORTHO05D007312 0.0e+00 1545.4 986 78.1
HanXRQChr04g0120411 Helianthus annuus HOM05D006425 ORTHO05D007312 0.0e+00 1543.5 1081 70.5
Aa31LG1G10590 Aethionema arabicum HOM05D006425 ORTHO05D007312 0.0e+00 1539.2 1077 71.4
Cc02_g39660 Coffea canephora HOM05D006425 ORTHO05D007312 0.0e+00 1535.8 1094 69.3
ClCG05G000660 Citrullus lanatus HOM05D006425 ORTHO05D007312 0.0e+00 1533.5 1087 71.6
AUR62022731 Chenopodium quinoa HOM05D006425 ORTHO05D007312 0.0e+00 1531.5 1084 70.5
Migut.B01889 Erythranthe guttata HOM05D006425 ORTHO05D007312 0.0e+00 1524.6 1087 70.1
DCAR_006981 Daucus carota HOM05D006425 ORTHO05D007312 0.0e+00 1519.2 1061 72.0
Ah.05g179300 Amaranthus hybridus HOM05D006425 ORTHO05D007312 0.0e+00 1509.2 1075 70.2
vmacro04289 Vaccinium macrocarpon HOM05D006425 ORTHO05D007312 0.0e+00 1508.8 1216 65.1
SGA_v2.0_scaffold22G09958 Striga asiatica HOM05D006425 ORTHO05D007312 0.0e+00 1508.4 1091 68.7
Peaxi162Scf00345g00024 Petunia axillaris HOM05D006425 ORTHO05D007312 0.0e+00 1493.8 1086 70.1
AUR62004524 Chenopodium quinoa HOM05D006425 ORTHO05D007312 0.0e+00 1493.0 1073 69.7
Hund27175 Selenicereus undatus HOM05D006425 ORTHO05D007312 0.0e+00 1491.5 1075 69.5
Nitab4.5_0006770g0030 Nicotiana tabacum HOM05D006425 ORTHO05D007312 0.0e+00 1476.8 1085 69.3
ATR0757G210 Amborella trichopoda HOM05D006425 ORTHO05D007312 0.0e+00 1446.0 1078 67.4
AT1G01220 Arabidopsis thaliana HOM05D006425 ORTHO05D007312 0.0e+00 1427.5 943 74.1
HPP92_015094 Vanilla planifolia HOM05D006425 ORTHO05D007312 0.0e+00 1422.9 1071 66.7
Lsat_1_v5_gn_7_2761 Lactuca sativa HOM05D006425 ORTHO05D007312 0.0e+00 1406.7 1084 66.1
SalBow3G3533 Salvia bowleyana HOM05D006425 ORTHO05D007312 0.0e+00 1389.4 1140 63.1
Os03g0115100 Oryza sativa ssp. japonica HOM05D006425 ORTHO05D007312 0.0e+00 1382.9 1090 64.4
Lj1g0006712 Lotus japonicus HOM05D006425 ORTHO05D007312 0.0e+00 1377.5 943 72.5
SHI13064 Sapria himalayana HOM05D006425 ORTHO05D007312 0.0e+00 1374.4 1201 59.4
Zm00001eb001000 Zea mays HOM05D006425 ORTHO05D007312 0.0e+00 1349.7 1090 63.0
CiPaw.02G042200 Carya illinoinensis HOM05D006425 ORTHO05D007312 0.0e+00 1240.3 759 80.6
Prupe.2G192700 Prunus persica HOM05D006425 ORTHO05D007312 0.0e+00 1228.4 758 79.8
unitig_899.g14792 Utricularia gibba HOM05D006425 ORTHO05D007312 0.0e+00 1226.1 1070 59.6
Nitab4.5_0000307g0050 Nicotiana tabacum HOM05D006425 ORTHO05D007312 0.0e+00 1213.7 974 64.9
Actinidia07981 Actinidia chinensis HOM05D006425 ORTHO05D007312 0.0e+00 1186.0 1090 59.4
EL10Ac1g00230 Beta vulgaris HOM05D006425 ORTHO05D007312 0.0e+00 1104.0 754 71.6
Gohir.A12G113700 Gossypium hirsutum HOM05D006425 ORTHO05D007312 0.0e+00 1096.6 719 75.2
Mapoly0065s0064 Marchantia polymorpha HOM05D006425 ORTHO05D007312 7.9e-288 994.2 1080 49.5
Actinidia20260 Actinidia chinensis HOM05D006425 ORTHO05D007312 3.8e-282 975.3 1025 54.5
Pp3c27_4880 Physcomitrium patens HOM05D006425 ORTHO05D007312 1.1e-268 930.6 1086 47.8
Sopen01g039900 Solanum pennellii HOM05D006425 ORTHO05D007312 2.4e-252 876.3 625 69.6
SEGI_19319 Sequoiadendron giganteum HOM05D006425 ORTHO05D007312 8.0e-248 861.3 712 60.8
BcaC07g42431 Brassica carinata HOM05D006425 ORTHO05D007312 1.3e-234 817.4 539 75.5
AagrBONN_evm.TU.Sc2ySwM_368.2372 Anthoceros agrestis HOM05D006425 ORTHO05D007312 6.0e-227 792.0 1020 44.8
BcaC07g42430 Brassica carinata HOM05D006425 ORTHO05D007312 3.3e-209 733.0 507 70.8
Sed0002059 Sechium edule HOM05D006425 ORTHO05D007312 4.8e-208 729.2 656 59.6
CBR_g42133 Chara braunii HOM05D006425 ORTHO05D007312 5.5e-188 662.5 1508 31.7
Sopen01g039890 Solanum pennellii HOM05D006425 ORTHO05D007312 3.7e-168 596.7 403 75.2
Gohir.A12G113750 Gossypium hirsutum HOM05D006425 ORTHO05D007312 2.7e-134 484.2 351 71.8
Hma1.2p1_0180F.1_g079620 Hydrangea macrophylla HOM05D006425 ORTHO05D007312 5.6e-84 317.0 194 77.3
MD01G1085000 Malus domestica HOM05D006425 ORTHO05D007312 8.7e-61 240.0 163 68.7
Hma1.2p1_0180F.1_g079630 Hydrangea macrophylla HOM05D006425 ORTHO05D007312 1.7e-40 172.6 112 77.7
SEGI_38786 Sequoiadendron giganteum HOM05D006425 ORTHO05D007312 5.5e-23 114.4 59 83.1
Actinidia20216 Actinidia chinensis HOM05D006425 ORTHO05D007312 2.8e-19 102.1 54 81.5
VMungo0720G2246 Vigna mungo HOM05D006425 ORTHO05D007312 2.7e-17 95.5 65 66.2
SEGI_36326 Sequoiadendron giganteum HOM05D006425 ORTHO05D007312 1.8e-13 82.8 148 38.5
MCO11G284 Micromonas commoda HOM05D006425 ORTHO05D007312 9.8e-12 77.0 530 20.9
TPR.G10878 Trifolium pratense HOM05D020190 ORTHO05D018030 6.4e-11 74.3 73 54.8
TPR.G39590 Trifolium pratense HOM05D020190 ORTHO05D018030 1.4e-10 73.2 73 53.4
CSS0018706 Camellia sinensis var. sinensis HOM05D006425 ORTHO05D007312 2.4e-10 72.4 49 63.3
CSS0027474 Camellia sinensis var. sinensis HOM05D006425 ORTHO05D007312 2.4e-10 72.4 49 63.3
CSS0040683 Camellia sinensis var. sinensis HOM05D006425 ORTHO05D007312 1.7e-08 66.2 40 72.5


User provided reference genes

Program Settings