Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.014G100250 Populus trichocarpa HOM05D007265 ORTHO05D009118 3.6e-21 104.0 52 100.0
Potri.002G173101 Populus trichocarpa HOM05D007265 ORTHO05D009118 2.1e-13 78.2 42 88.1
Sabra02G0140200 Salix brachista HOM05D007265 ORTHO05D009118 8.0e-13 76.3 42 85.7
Nitab4.5_0010712g0030 Nicotiana tabacum HOM05D007265 ORTHO05D009118 5.4e-09 63.5 45 71.1
GSVIVG01027169001 Vitis vinifera HOM05D007265 ORTHO05D009118 2.0e-08 61.6 47 68.1
DCAR_025264 Daucus carota HOM05D007265 ORTHO05D009118 4.5e-08 60.5 42 71.4
Nitab4.5_0001763g0020 Nicotiana tabacum HOM05D007265 ORTHO05D009118 4.5e-08 60.5 42 71.4
DCAR_005402 Daucus carota HOM05D007265 ORTHO05D009118 5.9e-08 60.1 42 71.4
Thecc.01G340400 Theobroma cacao HOM05D007265 ORTHO05D009118 5.9e-08 60.1 42 71.4
Lj7E499T0 Lonicera japonica HOM05D007265 ORTHO05D009118 7.7e-08 59.7 42 71.4
RcHm_v2.0_Chr1g0360081 Rosa chinensis HOM05D000497 ORTHO05D013080 1.0e-07 59.3 41 68.3
Duzib138G0325 Durio zibethinus HOM05D007265 ORTHO05D009118 1.3e-07 58.9 42 69.0
Gohir.A11G097900 Gossypium hirsutum HOM05D007265 ORTHO05D009118 1.7e-07 58.5 42 69.0
Gohir.D11G102600 Gossypium hirsutum HOM05D007265 ORTHO05D009118 1.7e-07 58.5 42 69.0
Nitab4.5_0000258g0270 Nicotiana tabacum HOM05D007265 ORTHO05D009118 1.7e-07 58.5 42 66.7
TAR374G1528 Trochodendron aralioides HOM05D007265 ORTHO05D009118 1.7e-07 58.5 40 72.5
Oeu008708.1 Olea europaea HOM05D007265 ORTHO05D009118 2.2e-07 58.2 40 72.5
ATR0602G127 Amborella trichopoda HOM05D007265 ORTHO05D009118 2.9e-07 57.8 40 70.0
Ciclev10023834m.g Citrus clementina HOM05D007265 ORTHO05D009118 2.9e-07 57.8 40 70.0
Hma1.2p1_0390F.1_g142620 Hydrangea macrophylla HOM05D007265 ORTHO05D009118 2.9e-07 57.8 40 70.0
Nn1g00287 Nelumbo nucifera HOM05D007265 ORTHO05D009118 2.9e-07 57.8 40 70.0
Nitab4.5_0003865g0020 Nicotiana tabacum HOM05D007265 ORTHO05D009118 2.9e-07 57.8 40 70.0
HPP92_020189 Vanilla planifolia HOM05D004435 ORTHO05D005103 5.0e-07 57.0 40 70.0
CAN.G1415.20 Capsicum annuum HOM05D007265 ORTHO05D009118 6.5e-07 56.6 42 64.3
Duzib133G0073 Durio zibethinus HOM05D007265 ORTHO05D009118 6.5e-07 56.6 42 66.7
CSS0038215 Camellia sinensis var. sinensis HOM05D007265 ORTHO05D009118 8.5e-07 56.2 42 66.7
MD01G1083600 Malus domestica HOM05D007265 ORTHO05D009118 8.5e-07 56.2 39 69.2
MD07G1152300 Malus domestica HOM05D007265 ORTHO05D009118 8.5e-07 56.2 39 69.2
Prupe.2G190600 Prunus persica HOM05D007265 ORTHO05D009118 8.5e-07 56.2 39 69.2
PSO063G4371 Papaver somniferum HOM05D007265 ORTHO05D009118 1.5e-06 55.5 40 67.5
PSO170G4391 Papaver somniferum HOM05D007265 ORTHO05D009118 1.5e-06 55.5 40 67.5
PGR042G1917 Punica granatum HOM05D007265 ORTHO05D009118 1.5e-06 55.5 42 64.3
SGA_v2.0_scaffold232G43548 Striga asiatica HOM05D007265 ORTHO05D009118 1.5e-06 55.5 43 65.1
Cc02_g39560 Coffea canephora HOM05D007265 ORTHO05D009118 1.9e-06 55.1 39 69.2
Gohir.D12G116700 Gossypium hirsutum HOM05D007265 ORTHO05D009118 1.9e-06 55.1 42 61.9
HanXRQChr16g0521331 Helianthus annuus HOM05D007265 ORTHO05D009118 1.9e-06 55.1 40 67.5
Atru.chr5.686 Acer truncatum HOM05D007265 ORTHO05D009118 2.5e-06 54.7 39 66.7
PGSC0003DMG400000233 Solanum tuberosum HOM05D007265 ORTHO05D009118 2.5e-06 54.7 40 67.5
Lj1g0009143 Lotus japonicus HOM05D007265 ORTHO05D009118 3.2e-06 54.3 39 66.7
Solyc01g096090.4 Solanum lycopersicum HOM05D007265 ORTHO05D009118 3.2e-06 54.3 42 66.7
Sopen01g039810 Solanum pennellii HOM05D007265 ORTHO05D009118 3.2e-06 54.3 42 66.7
THA.LOC104802081 Tarenaya hassleriana HOM05D007265 ORTHO05D009118 3.2e-06 54.3 42 61.9
CiPaw.01G077600 Carya illinoinensis HOM05D007265 ORTHO05D009118 4.2e-06 53.9 39 66.7
Hund16719 Selenicereus undatus HOM05D007265 ORTHO05D009118 4.2e-06 53.9 39 64.1
HanXRQChr03g0093001 Helianthus annuus HOM05D007265 ORTHO05D009118 5.5e-06 53.5 39 69.2
THA.LOC104817372 Tarenaya hassleriana HOM05D007265 ORTHO05D009118 5.5e-06 53.5 42 61.9
Glyma.03G258500 Glycine max HOM05D007265 ORTHO05D009118 7.2e-06 53.1 39 66.7
Glyma.19G257100 Glycine max HOM05D007265 ORTHO05D009118 7.2e-06 53.1 39 66.7
Gohir.A12G113200 Gossypium hirsutum HOM05D007265 ORTHO05D009118 7.2e-06 53.1 42 59.5
Phvul.006G114500 Phaseolus vulgaris HOM05D007265 ORTHO05D009118 7.2e-06 53.1 39 66.7
AL4G45970 Arabidopsis lyrata HOM05D007265 ORTHO05D009118 9.5e-06 52.8 42 61.9
AT2G46540 Arabidopsis thaliana HOM05D007265 ORTHO05D009118 9.5e-06 52.8 42 61.9
Thhalv10001742m.g Eutrema salsugineum HOM05D007265 ORTHO05D009118 9.5e-06 52.8 42 61.9
HanXRQChr13g0423241 Helianthus annuus HOM05D007265 ORTHO05D009118 9.5e-06 52.8 40 65.0
Sp4g28590 Schrenkiella parvula HOM05D007265 ORTHO05D009118 9.5e-06 52.8 42 61.9


User provided reference genes

Program Settings