Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.014G099500 Populus trichocarpa HOM05D006960 ORTHO05D008699 2.3e-134 482.3 249 100.0
Sabra14G0073000 Salix brachista HOM05D006960 ORTHO05D008699 1.9e-104 382.9 223 89.7
CSS0036785 Camellia sinensis var. sinensis HOM05D006960 ORTHO05D008699 2.0e-85 319.7 248 68.5
CSS0028122 Camellia sinensis var. sinensis HOM05D006960 ORTHO05D008699 5.8e-85 318.2 248 68.5
Gohir.D11G102000 Gossypium hirsutum HOM05D006960 ORTHO05D008699 7.5e-85 317.8 250 66.4
Ciclev10022060m.g Citrus clementina HOM05D006960 ORTHO05D008699 9.9e-85 317.4 248 69.0
Gorai.007G109000 Gossypium raimondii HOM05D006960 ORTHO05D008699 1.3e-84 317.0 250 66.0
Gohir.A11G097200 Gossypium hirsutum HOM05D006960 ORTHO05D008699 1.7e-84 316.6 250 66.4
Haze_15666 Corylus avellana HOM05D000451 ORTHO05D000351 2.9e-84 315.8 245 69.8
Manes.05G022300 Manihot esculenta HOM05D006960 ORTHO05D008699 4.9e-84 315.1 251 67.3
Thecc.01G341400 Theobroma cacao HOM05D006960 ORTHO05D008699 1.1e-83 313.9 250 68.0
COL.COLO4_21448 Corchorus olitorius HOM05D006960 ORTHO05D008699 1.9e-83 313.2 250 67.2
Atru.chr5.678 Acer truncatum HOM05D006960 ORTHO05D008699 1.6e-82 310.1 248 67.3
QL04p060559 Quercus lobata HOM05D006960 ORTHO05D008699 1.0e-81 307.4 248 69.4
TWI14G0597 Tripterygium wilfordii HOM05D006960 ORTHO05D008699 4.3e-80 302.0 250 68.0
CANSAT56G1276 Cannabis sativa HOM05D006960 ORTHO05D008699 1.2e-79 300.4 251 65.7
Prupe.2G189500 Prunus persica HOM05D006960 ORTHO05D008699 1.6e-79 300.1 248 66.9
vmacro12673 Vaccinium macrocarpon HOM05D006960 ORTHO05D008699 2.1e-79 299.7 248 66.1
Rhsim01G0172900 Rhododendron simsii HOM05D006960 ORTHO05D008699 4.7e-79 298.5 248 67.7
ClCG09G009460 Citrullus lanatus HOM05D006960 ORTHO05D008699 1.1e-78 297.4 248 64.5
FAN06G3195 Fragaria x ananassa HOM05D006960 ORTHO05D008699 1.1e-78 297.4 250 65.2
Rhsim04G0222700 Rhododendron simsii HOM05D006960 ORTHO05D008699 1.4e-78 297.0 248 67.3
MELO3C024139.2 Cucumis melo HOM05D006960 ORTHO05D008699 2.4e-78 296.2 248 64.5
FvH4_7g16680 Fragaria vesca HOM05D006960 ORTHO05D008699 6.8e-78 294.7 250 64.8
FAN06G2002 Fragaria x ananassa HOM05D006960 ORTHO05D008699 8.9e-78 294.3 250 64.4
ECA236G0577 Erigeron canadensis HOM05D006960 ORTHO05D008699 1.2e-77 293.9 248 65.7
Sed0021558 Sechium edule HOM05D006960 ORTHO05D008699 1.5e-77 293.5 248 64.1
FAN10G0984 Fragaria x ananassa HOM05D006960 ORTHO05D008699 2.6e-77 292.7 250 63.6
FAN01G3090 Fragaria x ananassa HOM05D006960 ORTHO05D008699 5.8e-77 291.6 250 63.6
Cpa.g.sc46.111 Carica papaya HOM05D006960 ORTHO05D008699 7.6e-77 291.2 249 63.9
DCAR_021504 Daucus carota HOM05D006960 ORTHO05D008699 9.9e-77 290.8 253 64.8
RcHm_v2.0_Chr1g0359831 Rosa chinensis HOM05D006960 ORTHO05D008699 8.4e-76 287.7 251 64.1
TAR629G1073 Trochodendron aralioides HOM05D006960 ORTHO05D008699 1.1e-75 287.3 248 63.7
Lalb_Chr06g0163941 Lupinus albus HOM05D006960 ORTHO05D008699 1.4e-75 287.0 246 63.0
EL10Ac1g00259 Beta vulgaris HOM05D006960 ORTHO05D008699 1.9e-75 286.6 248 62.9
MD07G1150800 Malus domestica HOM05D006960 ORTHO05D008699 5.4e-75 285.0 249 64.7
Eucgr.E00049 Eucalyptus grandis HOM05D006960 ORTHO05D008699 1.2e-74 283.9 247 63.2
Sc01g0002630 Simmondsia chinensis HOM05D000016 ORTHO05D007083 2.1e-74 283.1 248 63.3
Actinidia20248 Actinidia chinensis HOM05D000567 ORTHO05D001981 3.5e-74 282.3 234 65.4
FAN10G4095 Fragaria x ananassa HOM05D006960 ORTHO05D008699 3.5e-74 282.3 243 63.0
GSVIVG01027159001 Vitis vinifera HOM05D006960 ORTHO05D008699 6.0e-74 281.6 240 65.8
Ca_11259_v3 Cicer arietinum L. HOM05D006960 ORTHO05D008699 1.0e-73 280.8 246 65.0
PGSC0003DMG400007011 Solanum tuberosum HOM05D006960 ORTHO05D008699 5.1e-73 278.5 250 62.0
CAN.G1178.29 Capsicum annuum HOM05D006960 ORTHO05D008699 6.6e-73 278.1 250 62.0
Nitab4.5_0004506g0020 Nicotiana tabacum HOM05D006960 ORTHO05D008699 6.6e-73 278.1 251 62.9
Lsat_1_v5_gn_8_13101 Lactuca sativa HOM05D006960 ORTHO05D008699 1.5e-72 276.9 251 62.5
Nitab4.5_0000258g0220 Nicotiana tabacum HOM05D006960 ORTHO05D008699 1.9e-72 276.6 251 62.5
PGR142G3971 Punica granatum HOM05D006960 ORTHO05D008699 1.9e-72 276.6 254 61.8
Lj5g0001318 Lotus japonicus HOM05D006960 ORTHO05D008699 4.3e-72 275.4 245 61.6
Solyc05g050570.3 Solanum lycopersicum HOM05D006960 ORTHO05D008699 1.2e-71 273.9 241 62.7
Sopen05g029010 Solanum pennellii HOM05D006960 ORTHO05D008699 1.6e-71 273.5 251 61.4
Thhalv10008544m.g Eutrema salsugineum HOM05D006960 ORTHO05D008699 2.1e-71 273.1 249 60.2
HanXRQChr06g0170731 Helianthus annuus HOM05D006960 ORTHO05D008699 2.1e-71 273.1 239 62.3
Sp1g01000 Schrenkiella parvula HOM05D006960 ORTHO05D008699 2.1e-71 273.1 250 61.2
Glyma.20G102700 Glycine max HOM05D006960 ORTHO05D008699 3.6e-71 272.3 245 62.9
Psat6g234040 Pisum sativum HOM05D006960 ORTHO05D008699 4.7e-71 271.9 246 60.2
Carub.0001s0093 Capsella rubella HOM05D006960 ORTHO05D008699 1.2e-69 267.3 262 60.3
BraA09t42243Z Brassica rapa HOM05D006960 ORTHO05D008699 3.4e-69 265.8 249 60.2
AUR62004502 Chenopodium quinoa HOM05D006960 ORTHO05D008699 3.4e-69 265.8 248 58.9
Cc01_g12480 Coffea canephora HOM05D006960 ORTHO05D008699 3.4e-69 265.8 250 60.4
VMungo0720G2201 Vigna mungo HOM05D006960 ORTHO05D008699 3.4e-69 265.8 245 58.8
Aqoxy6G00316 Aquilegia oxysepala HOM05D006960 ORTHO05D008699 4.4e-69 265.4 248 59.7
CARHR001180 Cardamine hirsuta HOM05D006960 ORTHO05D008699 4.4e-69 265.4 254 61.4
PSO063G6262 Papaver somniferum HOM05D006960 ORTHO05D008699 5.8e-69 265.0 250 59.6
BolC8t52877H Brassica oleracea HOM05D006960 ORTHO05D008699 7.6e-69 264.6 251 59.4
Oeu007886.1 Olea europaea HOM05D006960 ORTHO05D008699 2.9e-68 262.7 251 58.6
Oeu014974.1 Olea europaea HOM05D006960 ORTHO05D008699 2.9e-68 262.7 251 58.6
A09p69060 Brassica napus HOM05D006960 ORTHO05D008699 4.9e-68 261.9 248 59.3
Medtr5g015740 Medicago truncatula HOM05D006960 ORTHO05D008699 4.9e-68 261.9 254 59.8
AT1G01290 Arabidopsis thaliana HOM05D006960 ORTHO05D008699 6.4e-68 261.5 263 59.7
C08p53630 Brassica napus HOM05D006960 ORTHO05D008699 6.4e-68 261.5 248 59.3
Dinv22299 Davidia involucrata HOM05D006960 ORTHO05D008699 1.4e-67 260.4 234 62.0
MSTRG.17349 Avicennia marina HOM05D006960 ORTHO05D008699 4.2e-67 258.8 251 58.2
Phvul.007G014400 Phaseolus vulgaris HOM05D006960 ORTHO05D008699 5.4e-67 258.5 245 59.6
Medtr1g114590 Medicago truncatula HOM05D006960 ORTHO05D008699 7.1e-67 258.1 254 59.1
TPR.G4075 Trifolium pratense HOM05D006960 ORTHO05D008699 3.5e-66 255.8 285 55.8
AL1G11170 Arabidopsis lyrata HOM05D006960 ORTHO05D008699 7.8e-66 254.6 228 64.0
Peaxi162Scf00716g00022 Petunia axillaris HOM05D006960 ORTHO05D008699 7.8e-66 254.6 218 64.2
SGA_v2.0_scaffold22G09984 Striga asiatica HOM05D006960 ORTHO05D008699 1.0e-65 254.2 251 59.8
SalBow3G0783 Salvia bowleyana HOM05D006960 ORTHO05D008699 1.3e-65 253.8 249 59.0
CAN.G1385.4 Capsicum annuum HOM05D006960 ORTHO05D008699 3.9e-65 252.3 213 65.3
Migut.B01880 Erythranthe guttata HOM05D006960 ORTHO05D008699 1.5e-64 250.4 252 59.9
Hund16718 Selenicereus undatus HOM05D006960 ORTHO05D008699 1.5e-64 250.4 219 61.6
Aa31LG5G970 Aethionema arabicum HOM05D000451 ORTHO05D000351 1.9e-64 250.0 214 64.0
MBI06_g44795_MAGBIO Magnolia biondii HOM05D006960 ORTHO05D008699 9.6e-64 247.7 248 57.3
Nn8g41032 Nelumbo nucifera HOM05D006960 ORTHO05D008699 1.3e-63 247.3 213 64.3
PSO170G4910 Papaver somniferum HOM05D006960 ORTHO05D008699 1.6e-63 246.9 243 58.4
Zm00001eb080710 Zea mays HOM05D006960 ORTHO05D008699 5.8e-61 238.4 242 55.4
Aqoxy3G01066 Aquilegia oxysepala HOM05D006960 ORTHO05D008699 7.6e-61 238.0 215 61.9
arahy.Tifrunner.gnm1.ann1.EW69V8 Arachis hypogaea HOM05D006471 ORTHO05D008157 2.2e-60 236.5 179 68.7
arahy.Tifrunner.gnm1.ann1.CCVT8N Arachis hypogaea HOM05D006960 ORTHO05D008699 5.4e-59 231.9 158 75.3
Os04g0460500 Oryza sativa ssp. japonica HOM05D006960 ORTHO05D008699 7.9e-58 228.0 224 56.2
unitig_899.g14796 Utricularia gibba HOM05D006960 ORTHO05D008699 5.1e-57 225.3 213 59.6
HPP92_002925 Vanilla planifolia HOM05D006960 ORTHO05D008699 2.2e-52 209.9 156 67.3
ATR0602G026 Amborella trichopoda HOM05D006960 ORTHO05D008699 1.5e-48 197.2 189 57.7
Pp3c20_11370 Physcomitrium patens HOM05D006960 ORTHO05D008699 2.8e-47 193.0 237 46.8
Mapoly0053s0024 Marchantia polymorpha HOM05D006960 ORTHO05D008699 4.8e-47 192.2 226 51.3
AUR62014969 Chenopodium quinoa HOM05D006960 ORTHO05D008699 1.8e-46 190.3 248 47.2
CsaV3_7G025390 Cucumis sativus L. HOM05D006960 ORTHO05D008699 4.9e-44 182.2 178 56.2
SMO351G0341 Selaginella moellendorffii HOM05D006960 ORTHO05D008699 3.5e-42 176.0 155 60.0
CDE10G0236 Ceratophyllum demersum HOM05D006960 ORTHO05D008699 5.3e-38 162.2 238 44.5
MCO01G113 Micromonas commoda HOM05D006960 ORTHO05D008699 9.0e-38 161.4 202 47.5
AUR62023452 Chenopodium quinoa HOM05D000040 ORTHO05D000759 1.5e-37 160.6 225 45.8
CBR_g23014 Chara braunii HOM05D006960 ORTHO05D008699 7.2e-35 151.8 155 51.0
Cre08.g361050 Chlamydomonas reinhardtii HOM05D006960 ORTHO05D008699 7.2e-35 151.8 154 53.9
HPP92_028636 Vanilla planifolia HOM05D006960 ORTHO05D008699 1.4e-33 147.5 250 42.0
VMungo0964G0001 Vigna mungo HOM05D006960 ORTHO05D008699 7.4e-32 141.7 155 48.4
CDE10G0916 Ceratophyllum demersum HOM05D000108 ORTHO05D001781 1.4e-30 137.5 112 61.6
FAN03G0019 Fragaria x ananassa HOM05D006960 ORTHO05D008699 2.0e-29 133.7 93 72.0
Cpa.g.sc96.27 Carica papaya HOM05D006960 ORTHO05D008699 1.5e-24 117.5 151 48.3
CiPaw.01G076800 Carya illinoinensis HOM05D006960 ORTHO05D008699 1.4e-22 110.9 129 51.9
TAR636G2744 Trochodendron aralioides HOM05D006960 ORTHO05D008699 4.1e-22 109.4 106 55.7
Cfa022703 Carpinus fangiana HOM05D006960 ORTHO05D008699 8.5e-20 101.7 159 40.3
Haze_27006 Corylus avellana HOM05D006202 ORTHO05D008699 7.2e-19 98.6 116 42.2
PRCOL_00000953 Prasinoderma coloniale HOM05D006960 ORTHO05D008699 5.3e-14 82.4 218 32.6
Gohir.D08G121100 Gossypium hirsutum HOM05D006960 ORTHO05D008699 8.8e-09 65.1 55 58.2
Gohir.D10G162832 Gossypium hirsutum HOM05D006960 ORTHO05D008699 8.8e-09 65.1 55 58.2
Gorai.002G097600 Gossypium raimondii HOM05D006960 ORTHO05D018836 1.2e-08 64.7 55 58.2
Gorai.011G078500 Gossypium raimondii HOM05D006960 ORTHO05D008699 2.0e-08 63.9 55 54.5
Gohir.D05G312133 Gossypium hirsutum HOM05D006960 ORTHO05D008699 3.3e-08 63.2 55 56.4
Medtr5g015730 Medicago truncatula HOM05D006960 ORTHO05D008699 6.3e-07 58.9 36 72.2


User provided reference genes

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