Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.014G099100 Populus trichocarpa HOM05D005676 ORTHO05D007375 0.0e+00 2222.2 1147 100.0
Sabra14G0072700 Salix brachista HOM05D005676 ORTHO05D007375 0.0e+00 2028.1 1148 91.5
Manes.01G246200 Manihot esculenta HOM05D005676 ORTHO05D007375 0.0e+00 1319.3 1158 63.0
Atru.chr5.673 Acer truncatum HOM05D005676 ORTHO05D007375 0.0e+00 1132.9 1181 56.6
Thecc.01G342000 Theobroma cacao HOM05D005676 ORTHO05D007375 0.0e+00 1130.2 1189 56.1
Cfa003798 Carpinus fangiana HOM05D005676 ORTHO05D007375 0.0e+00 1107.8 1180 55.0
Dinv32595 Davidia involucrata HOM05D005676 ORTHO05D007375 0.0e+00 1102.0 1287 52.2
Duzib268G0021 Durio zibethinus HOM05D005676 ORTHO05D007375 0.0e+00 1097.4 1203 54.0
Gorai.007G108400 Gossypium raimondii HOM05D005676 ORTHO05D007375 0.0e+00 1090.5 1178 54.8
Gohir.A11G096900 Gossypium hirsutum HOM05D005676 ORTHO05D007375 0.0e+00 1083.2 1179 54.5
QL04p060782 Quercus lobata HOM05D005676 ORTHO05D007375 0.0e+00 1077.0 1185 55.0
Prupe.2G189000 Prunus persica HOM05D005676 ORTHO05D007375 3.1e-311 1072.0 1176 54.2
Haze_15661 Corylus avellana HOM05D005676 ORTHO05D007375 1.2e-310 1070.1 1165 54.7
RcHm_v2.0_Chr1g0359591 Rosa chinensis HOM05D005676 ORTHO05D007375 7.8e-294 1014.2 1168 51.9
FAN10G0710 Fragaria x ananassa HOM05D005676 ORTHO05D007375 1.6e-291 1006.5 1172 51.6
FAN10G1066 Fragaria x ananassa HOM05D005676 ORTHO05D007375 1.4e-290 1003.4 1172 51.5
FvH4_7g16470 Fragaria vesca HOM05D005676 ORTHO05D007375 6.4e-288 994.6 1171 51.3
FAN06G1134 Fragaria x ananassa HOM05D005676 ORTHO05D007375 6.4e-288 994.6 1178 51.4
FAN06G4290 Fragaria x ananassa HOM05D005676 ORTHO05D007375 8.3e-288 994.2 1178 51.2
FAN03G1248 Fragaria x ananassa HOM05D005676 ORTHO05D007375 4.1e-287 991.9 1174 51.4
MD01G1081300 Malus domestica HOM05D005676 ORTHO05D007375 9.2e-287 990.7 1184 51.1
TAR636G2851 Trochodendron aralioides HOM05D005676 ORTHO05D007375 1.6e-286 989.9 1246 48.9
COL.COLO4_06282 Corchorus olitorius HOM05D005676 ORTHO05D007375 8.6e-285 984.2 1171 51.4
PGR031G0643 Punica granatum HOM05D005676 ORTHO05D007375 2.0e-281 973.0 1112 52.2
Lj3g0008614 Lotus japonicus HOM05D005676 ORTHO05D007375 9.9e-281 970.7 1246 48.5
Lalb_Chr17g0342721 Lupinus albus HOM05D005676 ORTHO05D007375 1.7e-280 969.9 1214 49.3
ClCG05G000790 Citrullus lanatus HOM05D005676 ORTHO05D007375 3.8e-280 968.8 1156 50.6
arahy.Tifrunner.gnm1.ann1.FH2LCI Arachis hypogaea HOM05D005676 ORTHO05D007375 3.5e-278 962.2 1239 47.9
Cpa.g.sc96.24 Carica papaya HOM05D005676 ORTHO05D007375 5.1e-277 958.4 1097 51.8
Sed0007378 Sechium edule HOM05D005676 ORTHO05D007375 8.6e-277 957.6 1163 50.6
MELO3C006021.2 Cucumis melo HOM05D005676 ORTHO05D007375 1.1e-276 957.2 1176 49.6
Ciclev10023383m.g Citrus clementina HOM05D005676 ORTHO05D007375 1.5e-276 956.8 1158 50.9
CiPaw.02G041000 Carya illinoinensis HOM05D005676 ORTHO05D007375 2.8e-275 952.6 948 57.8
arahy.Tifrunner.gnm1.ann1.L1WQQA Arachis hypogaea HOM05D005676 ORTHO05D007375 2.2e-272 943.0 1236 47.5
CsaV3_3G008030 Cucumis sativus L. HOM05D005676 ORTHO05D007375 1.9e-268 929.9 1174 49.1
Medtr8g027605 Medicago truncatula HOM05D005676 ORTHO05D007375 2.1e-267 926.4 1232 46.8
Nn1g00247 Nelumbo nucifera HOM05D005676 ORTHO05D007375 3.6e-267 925.6 1224 48.0
TPR.G16793 Trifolium pratense HOM05D005676 ORTHO05D007375 9.3e-263 911.0 1245 46.5
THA.LOC104817362 Tarenaya hassleriana HOM05D005676 ORTHO05D007375 2.5e-260 902.9 1193 47.6
Sc01g0002640 Simmondsia chinensis HOM05D005676 ORTHO05D007375 5.6e-260 901.7 1279 45.4
Phvul.010G114600 Phaseolus vulgaris HOM05D005676 ORTHO05D007375 8.1e-259 897.9 1327 44.8
Glyma.16G024100 Glycine max HOM05D005676 ORTHO05D007375 1.8e-258 896.7 1354 44.5
AL5G44340 Arabidopsis lyrata HOM05D005676 ORTHO05D007375 3.1e-258 896.0 1184 46.9
GSVIVG01027152001 Vitis vinifera HOM05D005676 ORTHO05D007375 3.9e-253 879.0 1166 47.4
MSTRG.17345 Avicennia marina HOM05D005676 ORTHO05D007375 1.3e-251 874.0 1196 45.8
BraA07t30214Z Brassica rapa HOM05D005676 ORTHO05D007375 1.3e-251 874.0 1176 45.6
A07p25740 Brassica napus HOM05D005676 ORTHO05D007375 1.1e-250 870.9 1173 45.6
Actinidia10141 Actinidia chinensis HOM05D005676 ORTHO05D007375 2.0e-249 866.7 1349 43.4
PGSC0003DMG400000228 Solanum tuberosum HOM05D005676 ORTHO05D007375 4.5e-249 865.5 1269 44.8
BcaC08g45161 Brassica carinata HOM05D005676 ORTHO05D007375 5.8e-249 865.1 1168 45.4
C06p27960 Brassica napus HOM05D005676 ORTHO05D007375 5.8e-249 865.1 1168 45.4
Sopen01g039730 Solanum pennellii HOM05D005676 ORTHO05D007375 5.8e-249 865.1 1249 44.8
Aqoxy7G00081 Aquilegia oxysepala HOM05D005676 ORTHO05D007375 2.2e-248 863.2 1222 45.2
Carub.0005s2852 Capsella rubella HOM05D005676 ORTHO05D007375 2.2e-248 863.2 1178 45.2
AT3G61780 Arabidopsis thaliana HOM05D005676 ORTHO05D007375 4.9e-248 862.1 1133 46.6
Solyc01g096010.4 Solanum lycopersicum HOM05D005676 ORTHO05D007375 8.4e-248 861.3 1249 45.0
Psat4g161440 Pisum sativum HOM05D005676 ORTHO05D007375 2.5e-247 859.8 1361 42.3
Sp5g01590 Schrenkiella parvula HOM05D005676 ORTHO05D007375 2.5e-247 859.8 1191 44.4
Nitab4.5_0013740g0030 Nicotiana tabacum HOM05D005676 ORTHO05D007375 5.5e-247 858.6 1209 45.7
VMungo0331G0849 Vigna mungo HOM05D005676 ORTHO05D007375 1.2e-246 857.4 1395 42.3
CSS0030996 Camellia sinensis var. sinensis HOM05D005676 ORTHO05D007375 1.3e-245 854.0 1106 48.4
Peaxi162Scf00786g00018 Petunia axillaris HOM05D005676 ORTHO05D007375 1.3e-245 854.0 1193 44.4
Nitab4.5_0000172g0490 Nicotiana tabacum HOM05D005676 ORTHO05D007375 1.8e-245 853.6 1183 45.6
Lj9A598G65 Lonicera japonica HOM05D005676 ORTHO05D007375 3.0e-245 852.8 1228 44.9
EL10Ac1g00264 Beta vulgaris HOM05D005676 ORTHO05D007375 2.5e-244 849.7 1370 41.5
SalBow3G4648 Salvia bowleyana HOM05D005676 ORTHO05D007375 3.3e-244 849.4 1184 45.4
Oeu043238.1 Olea europaea HOM05D005676 ORTHO05D007375 2.8e-243 846.3 987 50.6
Aa31LG10G15770 Aethionema arabicum HOM05D005676 ORTHO05D007375 3.1e-242 842.8 1155 45.5
CAN.G1415.28 Capsicum annuum HOM05D005676 ORTHO05D007375 5.3e-242 842.0 1205 45.1
Eucgr.D02379 Eucalyptus grandis HOM05D005676 ORTHO05D007375 5.3e-242 842.0 944 52.3
BolC6t37957H Brassica oleracea HOM05D005676 ORTHO05D007375 1.2e-241 840.9 1169 44.4
SalBow6G4948 Salvia bowleyana HOM05D005676 ORTHO05D007375 4.5e-241 839.0 1166 45.4
Migut.B01876 Erythranthe guttata HOM05D005676 ORTHO05D007375 5.0e-240 835.5 1181 45.0
Thhalv10005757m.g Eutrema salsugineum HOM05D005676 ORTHO05D007375 2.7e-238 829.7 1178 44.7
Hund16716 Selenicereus undatus HOM05D005676 ORTHO05D007375 3.9e-237 825.9 1368 41.0
Ah.05g179510 Amaranthus hybridus HOM05D005676 ORTHO05D007375 2.2e-235 820.1 1351 41.1
DCAR_005392 Daucus carota HOM05D005676 ORTHO05D007375 5.3e-234 815.5 1243 42.7
CARHR172110 Cardamine hirsuta HOM05D005676 ORTHO05D007375 3.4e-233 812.8 1142 44.7
AUR62004498 Chenopodium quinoa HOM05D005676 ORTHO05D007375 8.5e-232 808.1 1378 41.2
AUR62023455 Chenopodium quinoa HOM05D005676 ORTHO05D007375 2.7e-230 803.1 1359 41.1
CDE02G4093 Ceratophyllum demersum HOM05D005676 ORTHO05D007375 2.3e-221 773.5 1249 39.8
Lsat_1_v5_gn_3_140321 Lactuca sativa HOM05D005676 ORTHO05D007375 2.2e-219 766.9 1172 43.2
unitig_899.g14797 Utricularia gibba HOM05D005676 ORTHO05D007375 2.1e-214 750.4 1136 43.0
SGA_v2.0_scaffold5G03020 Striga asiatica HOM05D005676 ORTHO05D007375 4.0e-213 746.1 1208 40.4
Ca_23531_v3 Cicer arietinum L. HOM05D005676 ORTHO05D007375 3.5e-209 733.0 929 47.1
Cc02_g39430 Coffea canephora HOM05D005676 ORTHO05D007375 4.5e-209 732.6 961 47.5
Hma1.2p1_0139F.1_g063260 Hydrangea macrophylla HOM05D005676 ORTHO05D007375 2.0e-201 707.2 632 59.7
MBI06_g46583_MAGBIO Magnolia biondii HOM05D005676 ORTHO05D007375 1.4e-197 694.5 891 48.7
HanXRQChr11g0352981 Helianthus annuus HOM05D005676 ORTHO05D007375 2.3e-189 667.2 1143 41.2
BcaC08g45164 Brassica carinata HOM05D005676 ORTHO05D007375 6.8e-189 665.6 1049 42.3
ECA246G1832 Erigeron canadensis HOM05D000467 ORTHO05D000379 3.9e-176 623.2 881 44.6
Gohir.D11G101600 Gossypium hirsutum HOM05D005676 ORTHO05D007375 3.6e-166 590.1 824 47.7
ATR0602G016 Amborella trichopoda HOM05D005676 ORTHO05D007375 3.7e-142 510.4 1158 35.1
AT5G28400 Arabidopsis thaliana HOM05D005676 ORTHO05D007375 6.3e-126 456.4 838 40.1
Glyma.07G055432 Glycine max HOM05D005676 ORTHO05D007375 6.3e-102 376.7 283 68.2
AT5G28320 Arabidopsis thaliana HOM05D005676 ORTHO05D007375 8.5e-99 366.3 949 33.5
AL5G43810 Arabidopsis lyrata HOM05D005676 ORTHO05D007375 9.4e-98 362.8 584 38.4
Gohir.D11G101550 Gossypium hirsutum HOM05D005676 ORTHO05D007375 3.1e-85 321.2 216 73.6
AagrBONN_evm.TU.Sc2ySwM_368.2853 Anthoceros agrestis HOM05D005676 ORTHO05D007375 8.6e-83 313.2 1125 28.4
Mapoly0008s0022 Marchantia polymorpha HOM05D005676 ORTHO05D007375 2.8e-81 308.1 1046 28.0
Actinidia20244 Actinidia chinensis HOM05D005676 ORTHO05D007375 2.6e-79 301.6 577 37.1
MD07G1150200 Malus domestica HOM05D005676 ORTHO05D007375 1.2e-76 292.7 507 42.2
MD07G1150100 Malus domestica HOM05D005676 ORTHO05D007375 2.8e-73 281.6 179 74.3
Oeu007893.1 Olea europaea HOM05D005676 ORTHO05D007375 1.2e-71 276.2 562 35.8
Pp3c12_1870 Physcomitrium patens HOM05D005676 ORTHO05D007375 3.6e-65 254.6 808 29.3
FAN06G2271 Fragaria x ananassa HOM05D005676 ORTHO05D007375 2.1e-41 175.6 493 32.5
SEGI_31295 Sequoiadendron giganteum HOM05D005676 ORTHO05D007375 2.8e-41 175.3 438 32.0
MBI06_g46582_MAGBIO Magnolia biondii HOM05D005676 ORTHO05D007375 6.4e-38 164.1 304 38.2
SEGI_23777 Sequoiadendron giganteum HOM05D005676 ORTHO05D007375 7.1e-29 134.0 163 42.3
FAN06G3424 Fragaria x ananassa HOM05D005676 ORTHO05D007375 6.0e-28 131.0 220 43.2
CBR_g23443 Chara braunii HOM05D005676 ORTHO05D007375 1.0e-27 130.2 557 22.3
TPR.G23509 Trifolium pratense HOM05D005676 ORTHO05D007375 1.4e-24 119.8 132 52.3
Cpa.g.sc96.22 Carica papaya HOM05D005676 ORTHO05D007375 2.6e-23 115.5 88 70.5
Glyma.07G055366 Glycine max HOM05D005676 ORTHO05D007375 1.7e-22 112.8 245 38.8
FAN03G0974 Fragaria x ananassa HOM05D005676 ORTHO05D007375 8.4e-22 110.5 278 36.7
MBI18_g13693_MAGBIO Magnolia biondii HOM05D007342 ORTHO05D009252 3.2e-21 108.6 453 26.9
MD07G1150300 Malus domestica HOM05D005676 ORTHO05D007375 4.2e-21 108.2 155 45.2
ATR0602G131 Amborella trichopoda HOM05D005676 ORTHO05D007375 4.6e-20 104.8 68 72.1
FvH4_7g16530 Fragaria vesca HOM05D005676 ORTHO05D007375 3.0e-19 102.1 62 79.0
FvH4_7g16560 Fragaria vesca HOM05D005676 ORTHO05D007375 1.1e-18 100.1 234 38.9
FAN03G3457 Fragaria x ananassa HOM05D005676 ORTHO05D007375 1.1e-18 100.1 390 27.2
FAN06G1105 Fragaria x ananassa HOM05D005676 ORTHO05D007375 3.3e-18 98.6 234 38.5
MBI18_g13694_MAGBIO Magnolia biondii HOM05D007342 ORTHO05D009252 9.6e-18 97.1 465 25.2
FvH4_7g16531 Fragaria vesca HOM05D005676 ORTHO05D007375 3.1e-16 92.0 102 53.9
Cfa015389 Carpinus fangiana HOM05D007342 ORTHO05D009252 1.3e-14 86.7 133 33.1
Haze_01197 Corylus avellana HOM05D007342 ORTHO05D009252 1.3e-14 86.7 133 33.1
Ca_23165_v3 Cicer arietinum L. HOM05D005676 ORTHO05D007375 2.9e-14 85.5 132 45.5
FAN03G0940 Fragaria x ananassa HOM05D005676 ORTHO05D007375 3.8e-14 85.1 80 60.0
QL06p008994 Quercus lobata HOM05D007342 ORTHO05D009252 1.1e-13 83.6 133 33.8
Dinv29744 Davidia involucrata HOM05D007342 ORTHO05D009252 3.2e-13 82.0 124 34.7
CiPaw.01G148300 Carya illinoinensis HOM05D007342 ORTHO05D009252 1.6e-12 79.7 133 30.1
Rhsim02G0008900 Rhododendron simsii HOM05D007342 ORTHO05D009252 2.1e-12 79.3 113 38.1
Aqoxy5G00727 Aquilegia oxysepala HOM05D007342 ORTHO05D009252 1.0e-11 77.0 112 38.4
Prupe.1G135700 Prunus persica HOM05D007342 ORTHO05D009252 1.3e-11 76.6 131 31.3
RcHm_v2.0_Chr4g0422351 Rosa chinensis HOM05D007342 ORTHO05D009252 1.8e-11 76.3 131 32.1
MD13G1168100 Malus domestica HOM05D007342 ORTHO05D009252 3.0e-11 75.5 112 31.2
Oeu045723.1 Olea europaea HOM05D007342 ORTHO05D009252 5.1e-11 74.7 164 29.3
DCAR_023285 Daucus carota HOM05D007342 ORTHO05D009252 6.7e-11 74.3 168 26.8
TAR633G2120 Trochodendron aralioides HOM05D007342 ORTHO05D009252 1.5e-10 73.2 290 24.1
THA.LOC104820266 Tarenaya hassleriana HOM05D007342 ORTHO05D009252 1.9e-10 72.8 117 32.5
THA.LOC104820268 Tarenaya hassleriana HOM05D007342 ORTHO05D009252 1.9e-10 72.8 117 32.5
GSVIVG01017735001 Vitis vinifera HOM05D007342 ORTHO05D009252 1.9e-10 72.8 274 24.1
ATR0796G152 Amborella trichopoda HOM05D007342 ORTHO05D009252 2.5e-10 72.4 132 33.3
Actinidia14301 Actinidia chinensis HOM05D007342 ORTHO05D009252 3.3e-10 72.0 259 26.6
MSTRG.10096 Avicennia marina HOM05D007342 ORTHO05D009252 4.3e-10 71.6 437 22.9
Thhalv10025032m.g Eutrema salsugineum HOM05D007342 ORTHO05D009252 4.3e-10 71.6 136 30.1
FvH4_4g18220 Fragaria vesca HOM05D007342 ORTHO05D009252 4.3e-10 71.6 131 31.3
FAN12G0202 Fragaria x ananassa HOM05D007342 ORTHO05D009252 4.3e-10 71.6 131 31.3
FAN12G3549 Fragaria x ananassa HOM05D007342 ORTHO05D009252 4.3e-10 71.6 131 31.3
FAN17G1678 Fragaria x ananassa HOM05D007342 ORTHO05D009252 4.3e-10 71.6 131 31.3
AT4G15820 Arabidopsis thaliana HOM05D007342 ORTHO05D009252 5.7e-10 71.2 120 30.8
Aa31LG10G6280 Aethionema arabicum HOM05D007342 ORTHO05D009252 7.4e-10 70.9 164 28.0
Cpa.g.sc16.174 Carica papaya HOM05D007342 ORTHO05D009252 1.6e-09 69.7 116 31.9
CSS0019788 Camellia sinensis var. sinensis HOM05D007342 ORTHO05D009252 2.2e-09 69.3 123 28.5
CANSAT78G2360 Cannabis sativa HOM05D007342 ORTHO05D009252 2.2e-09 69.3 302 25.2
FAN06G0289 Fragaria x ananassa HOM05D005676 ORTHO05D007375 2.2e-09 69.3 36 86.1
TWI53G0473 Tripterygium wilfordii HOM05D007342 ORTHO05D009252 2.2e-09 69.3 113 31.9
COL.COLO4_13866 Corchorus olitorius HOM05D007342 ORTHO05D009252 2.8e-09 68.9 118 30.5
ECA240G4261 Erigeron canadensis HOM05D007342 ORTHO05D009252 6.3e-09 67.8 159 25.8
Actinidia00019 Actinidia chinensis HOM05D007342 ORTHO05D009252 8.2e-09 67.4 298 25.8
Hund19378 Selenicereus undatus HOM05D007342 ORTHO05D009252 8.2e-09 67.4 112 31.2
Lalb_Chr12g0196601 Lupinus albus HOM05D007342 ORTHO05D009252 1.4e-08 66.6 120 29.2
AL7G39470 Arabidopsis lyrata HOM05D007342 ORTHO05D009252 1.8e-08 66.2 124 31.5
CARHR290340 Cardamine hirsuta HOM05D007342 ORTHO05D009252 1.8e-08 66.2 126 27.0
MELO3C021329.2 Cucumis melo HOM05D007342 ORTHO05D009252 2.4e-08 65.9 165 24.2
Lsat_1_v5_gn_5_56841 Lactuca sativa HOM05D007342 ORTHO05D009252 4.1e-08 65.1 112 29.5
Haze_06221 Corylus avellana HOM05D005676 ORTHO05D007375 6.9e-08 64.3 128 35.9
CDE02G3410 Ceratophyllum demersum HOM05D007342 ORTHO05D009252 9.0e-08 63.9 120 30.0
SalBow2G3523 Salvia bowleyana HOM05D007342 ORTHO05D009252 9.0e-08 63.9 114 30.7
Aa31LG8G12350 Aethionema arabicum HOM05D005676 ORTHO05D007375 2.0e-07 62.8 97 44.3
Carub.0007s2583 Capsella rubella HOM05D007342 ORTHO05D009252 4.5e-07 61.6 270 25.2
ClCG06G005120 Citrullus lanatus HOM05D007342 ORTHO05D009252 4.5e-07 61.6 363 22.3
SEGI_23790 Sequoiadendron giganteum HOM05D005676 ORTHO05D007375 6.5e-06 57.8 75 38.7
Glyma.17G026800 Glycine max HOM05D007342 ORTHO05D009252 8.5e-06 57.4 232 22.0


User provided reference genes

Program Settings