Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.014G093100 Populus trichocarpa HOM05D004373 ORTHO05D005203 2.6e-172 608.6 304 100.0
Sabra14G0067500 Salix brachista HOM05D004373 ORTHO05D005203 1.3e-147 526.6 324 83.6
Sabra14G0069300 Salix brachista HOM05D004373 ORTHO05D005203 9.7e-143 510.4 398 70.1
Manes.12G048800 Manihot esculenta HOM05D004373 ORTHO05D005203 2.6e-124 449.1 310 73.9
Atru.chr6.3556 Acer truncatum HOM05D004373 ORTHO05D005203 6.5e-123 444.5 280 79.6
PGR042G0892 Punica granatum HOM05D004373 ORTHO05D005203 6.5e-123 444.5 259 84.2
QL07p014019 Quercus lobata HOM05D004373 ORTHO05D005203 2.5e-122 442.6 285 78.9
Ciclev10017823m.g Citrus clementina HOM05D004373 ORTHO05D005203 4.2e-122 441.8 263 81.7
Eucgr.D00004 Eucalyptus grandis HOM05D004373 ORTHO05D005203 5.5e-122 441.4 246 87.0
COL.COLO4_33707 Corchorus olitorius HOM05D004373 ORTHO05D005203 1.6e-121 439.9 288 75.0
Cc05_g09170 Coffea canephora HOM05D004373 ORTHO05D005203 2.7e-121 439.1 315 73.0
Gohir.D01G165500 Gossypium hirsutum HOM05D004373 ORTHO05D005203 2.7e-121 439.1 306 73.5
Gorai.002G205900 Gossypium raimondii HOM05D004373 ORTHO05D005203 2.7e-121 439.1 306 73.5
Thecc.01G158800 Theobroma cacao HOM05D004373 ORTHO05D005203 4.7e-121 438.3 267 79.4
Solyc07g055850.4 Solanum lycopersicum HOM05D004373 ORTHO05D005203 6.1e-121 438.0 244 86.9
Ca_06293_v3 Cicer arietinum L. HOM05D004373 ORTHO05D005203 1.0e-120 437.2 302 74.8
Haze_13471 Corylus avellana HOM05D004373 ORTHO05D005203 1.4e-120 436.8 270 80.4
TWI60G0341 Tripterygium wilfordii HOM05D004373 ORTHO05D005203 1.4e-120 436.8 276 78.6
Gohir.A01G174300 Gossypium hirsutum HOM05D004373 ORTHO05D005203 1.8e-120 436.4 287 76.7
Dinv12714 Davidia involucrata HOM05D004373 ORTHO05D005203 2.3e-120 436.0 271 79.0
Medtr5g091910 Medicago truncatula HOM05D004373 ORTHO05D005203 3.0e-120 435.6 304 73.4
VMungo0647G0741 Vigna mungo HOM05D004373 ORTHO05D005203 3.0e-120 435.6 295 75.3
Sopen07g029220 Solanum pennellii HOM05D004373 ORTHO05D005203 4.0e-120 435.3 296 75.0
Phvul.008G264200 Phaseolus vulgaris HOM05D004373 ORTHO05D005203 8.8e-120 434.1 282 77.3
CAN.G1481.10 Capsicum annuum HOM05D004373 ORTHO05D005203 1.2e-119 433.7 298 73.2
Thhalv10016964m.g Eutrema salsugineum HOM05D004373 ORTHO05D005203 1.2e-119 433.7 261 78.5
Sp4g13390 Schrenkiella parvula HOM05D004373 ORTHO05D005203 2.0e-119 433.0 261 78.9
Prupe.3G169300 Prunus persica HOM05D004373 ORTHO05D005203 3.4e-119 432.2 307 73.0
TPR.G12597 Trifolium pratense HOM05D004373 ORTHO05D005203 3.4e-119 432.2 304 73.4
Peaxi162Scf00154g00813 Petunia axillaris HOM05D004373 ORTHO05D005203 4.4e-119 431.8 300 73.3
RcHm_v2.0_Chr2g0150821 Rosa chinensis HOM05D004373 ORTHO05D005203 4.4e-119 431.8 306 73.2
arahy.Tifrunner.gnm1.ann1.JRDS1A Arachis hypogaea HOM05D004373 ORTHO05D005203 5.7e-119 431.4 297 74.1
CiPaw.03G195500 Carya illinoinensis HOM05D004373 ORTHO05D005203 7.5e-119 431.0 248 84.7
Glyma.02G288400 Glycine max HOM05D004373 ORTHO05D005203 9.7e-119 430.6 292 76.0
THA.LOC104800821 Tarenaya hassleriana HOM05D004373 ORTHO05D005203 2.8e-118 429.1 244 84.4
Glyma.14G026600 Glycine max HOM05D004373 ORTHO05D005203 3.7e-118 428.7 296 74.0
CARHR124420 Cardamine hirsuta HOM05D004373 ORTHO05D005203 6.3e-118 427.9 279 73.5
arahy.Tifrunner.gnm1.ann1.GN05X3 Arachis hypogaea HOM05D004373 ORTHO05D005203 1.1e-117 427.2 297 74.7
BcaB02g10348 Brassica carinata HOM05D004373 ORTHO05D005203 1.1e-117 427.2 274 74.8
Psat2g014440 Pisum sativum HOM05D004373 ORTHO05D005203 1.1e-117 427.2 300 73.0
Lj2g0023469 Lotus japonicus HOM05D004373 ORTHO05D005203 1.4e-117 426.8 242 86.0
Lalb_Chr10g0106811 Lupinus albus HOM05D004373 ORTHO05D005203 1.4e-117 426.8 267 79.4
RcHm_v2.0_Chr4g0446711 Rosa chinensis HOM05D004373 ORTHO05D005203 1.8e-117 426.4 305 72.8
MSTRG.6768 Avicennia marina HOM05D004373 ORTHO05D005203 3.1e-117 425.6 245 82.9
A04p23610 Brassica napus HOM05D004373 ORTHO05D005203 4.1e-117 425.2 265 76.6
FvH4_6g37760 Fragaria vesca HOM05D004373 ORTHO05D005203 5.3e-117 424.9 242 85.1
SalBow7G3596 Salvia bowleyana HOM05D004373 ORTHO05D005203 7.0e-117 424.5 313 70.0
Aa31LG5G6000 Aethionema arabicum HOM05D004373 ORTHO05D005203 1.2e-116 423.7 250 80.8
Migut.M00217 Erythranthe guttata HOM05D004373 ORTHO05D005203 1.2e-116 423.7 296 73.6
Actinidia11187 Actinidia chinensis HOM05D004373 ORTHO05D005203 1.6e-116 423.3 251 82.1
Aqoxy1G01913 Aquilegia oxysepala HOM05D004373 ORTHO05D005203 2.0e-116 422.9 247 82.6
FAN14G0255 Fragaria x ananassa HOM05D004373 ORTHO05D005203 2.0e-116 422.9 242 84.7
BcaB06g28458 Brassica carinata HOM05D004373 ORTHO05D005203 2.7e-116 422.5 272 75.4
CSS0005427 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 2.7e-116 422.5 269 77.3
Hma1.2p1_0178F.1_g078200 Hydrangea macrophylla HOM05D004373 ORTHO05D005203 3.5e-116 422.2 270 76.7
LjContig00222g0009609 Lotus japonicus HOM05D004373 ORTHO05D005203 7.7e-116 421.0 242 84.3
C04p60040 Brassica napus HOM05D004373 ORTHO05D005203 1.0e-115 420.6 272 75.0
AUR62041333 Chenopodium quinoa HOM05D004373 ORTHO05D005203 1.3e-115 420.2 257 77.8
Nn3g21008 Nelumbo nucifera HOM05D004373 ORTHO05D005203 1.3e-115 420.2 304 70.7
AT2G30920 Arabidopsis thaliana HOM05D004373 ORTHO05D005203 2.2e-115 419.5 295 69.8
Carub.0004s1212 Capsella rubella HOM05D004373 ORTHO05D005203 2.2e-115 419.5 250 78.8
FAN05G3369 Fragaria x ananassa HOM05D004373 ORTHO05D005203 5.0e-115 418.3 306 70.6
MD17G1142800 Malus domestica HOM05D004373 ORTHO05D005203 2.5e-114 416.0 305 70.5
AL4G25860 Arabidopsis lyrata HOM05D004373 ORTHO05D005203 5.5e-114 414.8 273 72.2
unitig_747.g21614 Utricularia gibba HOM05D004373 ORTHO05D005203 5.5e-114 414.8 244 79.1
ECA233G5691 Erigeron canadensis HOM05D004373 ORTHO05D005203 7.2e-114 414.5 248 80.2
Lsat_1_v5_gn_8_31981 Lactuca sativa HOM05D004373 ORTHO05D005203 7.2e-114 414.5 306 68.3
ATR0213G014 Amborella trichopoda HOM05D004373 ORTHO05D005203 1.2e-113 413.7 245 80.8
BraA04t17887Z Brassica rapa HOM05D004373 ORTHO05D005203 1.2e-113 413.7 283 72.1
DCAR_013302 Daucus carota HOM05D004373 ORTHO05D005203 1.2e-113 413.7 271 75.6
HanXRQChr10g0305621 Helianthus annuus HOM05D004373 ORTHO05D005203 1.6e-113 413.3 259 79.2
EL10Ac9g21021 Beta vulgaris HOM05D004373 ORTHO05D005203 4.7e-113 411.8 316 66.5
HanXRQChr13g0386831 Helianthus annuus HOM05D004373 ORTHO05D005203 1.0e-112 410.6 305 69.8
Ah.01g016050 Amaranthus hybridus HOM05D004373 ORTHO05D005203 2.3e-112 409.5 317 65.6
MD09G1156300 Malus domestica HOM05D004373 ORTHO05D005203 4.0e-112 408.7 307 69.7
SGA_v2.0_scaffold265G46119 Striga asiatica HOM05D004373 ORTHO05D005203 6.8e-112 407.9 278 73.4
CANSAT64G2747 Cannabis sativa HOM05D004373 ORTHO05D005203 1.5e-111 406.8 316 65.8
MBI06_g08521_MAGBIO Magnolia biondii HOM05D004373 ORTHO05D005203 4.4e-111 405.2 246 79.3
HanXRQChr12g0367481 Helianthus annuus HOM05D004373 ORTHO05D005203 3.7e-110 402.1 254 75.6
MELO3C019708.2 Cucumis melo HOM05D004373 ORTHO05D005203 8.3e-110 401.0 252 76.6
FAN02G0860 Fragaria x ananassa HOM05D004373 ORTHO05D005203 1.1e-109 400.6 332 65.4
CsaV3_6G015650 Cucumis sativus L. HOM05D004373 ORTHO05D005203 1.8e-109 399.8 304 67.1
Os06g0152300 Oryza sativa ssp. japonica HOM05D004373 ORTHO05D005203 3.1e-109 399.1 245 76.7
SGA_v2.0_scaffold34G13681 Striga asiatica HOM05D004373 ORTHO05D005203 5.4e-109 398.3 246 79.7
PSO675G5443 Papaver somniferum HOM05D004373 ORTHO05D005203 2.0e-108 396.4 291 66.7
HPP92_000569 Vanilla planifolia HOM05D004373 ORTHO05D005203 4.5e-108 395.2 243 77.4
Zm00001eb376720 Zea mays HOM05D004373 ORTHO05D005203 1.0e-107 394.0 247 74.1
PSO541G0058 Papaver somniferum HOM05D004373 ORTHO05D005203 2.9e-107 392.5 291 64.9
Zm00001eb347960 Zea mays HOM05D004373 ORTHO05D005203 1.1e-106 390.6 244 74.2
Zm00001eb348020 Zea mays HOM05D004373 ORTHO05D005203 1.5e-106 390.2 247 73.7
ClCG02G018260 Citrullus lanatus HOM05D004373 ORTHO05D005203 5.5e-106 388.3 298 65.8
Duzib147G0031 Durio zibethinus HOM05D004373 ORTHO05D005203 6.1e-105 384.8 300 68.0
CDE02G2202 Ceratophyllum demersum HOM05D004373 ORTHO05D005203 2.3e-104 382.9 300 66.3
Lj6A610T47 Lonicera japonica HOM05D004373 ORTHO05D005203 1.3e-102 377.1 260 73.1
BcaB06g28393 Brassica carinata HOM05D004373 ORTHO05D005203 1.8e-101 373.2 261 69.7
FAN09G0397 Fragaria x ananassa HOM05D003004 ORTHO05D003860 5.4e-101 371.7 301 66.4
RcHm_v2.0_Chr7g0218911 Rosa chinensis HOM05D004373 ORTHO05D005203 1.7e-99 366.7 212 83.5
Sed0027414 Sechium edule HOM05D004373 ORTHO05D005203 1.5e-98 363.6 232 75.9
Manes.17G059600 Manihot esculenta HOM05D004373 ORTHO05D005203 1.2e-97 360.5 308 65.6
Rhsim06G0122100 Rhododendron simsii HOM05D004373 ORTHO05D005203 1.6e-97 360.1 379 54.9
Nitab4.5_0001121g0130 Nicotiana tabacum HOM05D004373 ORTHO05D005203 3.4e-95 352.4 295 63.7
vmacro12435 Vaccinium macrocarpon HOM05D004373 ORTHO05D005203 2.9e-94 349.4 249 71.5
CARHR124890 Cardamine hirsuta HOM05D004373 ORTHO05D005203 1.4e-93 347.1 212 75.0
Gorai.002G206300 Gossypium raimondii HOM05D004373 ORTHO05D005203 3.2e-93 345.9 249 70.3
SGA_v2.0_scaffold34G13678 Striga asiatica HOM05D004373 ORTHO05D005203 3.2e-93 345.9 216 79.6
AagrBONN_evm.TU.Sc2ySwM_228.3026 Anthoceros agrestis HOM05D004373 ORTHO05D005203 2.0e-92 343.2 251 64.9
Hund00826 Selenicereus undatus HOM05D004373 ORTHO05D005203 2.7e-92 342.8 277 61.7
Manes.16G042550 Manihot esculenta HOM05D004373 ORTHO05D005203 2.1e-89 333.2 244 70.1
Pp3c16_12920 Physcomitrium patens HOM05D004373 ORTHO05D005203 1.5e-87 327.0 283 57.2
Gohir.D01G165850 Gossypium hirsutum HOM05D004373 ORTHO05D005203 2.8e-81 306.2 232 67.2
Sed0000249 Sechium edule HOM05D004373 ORTHO05D005203 8.1e-81 304.7 189 77.2
Cfa021389 Carpinus fangiana HOM05D003004 ORTHO05D003860 8.3e-78 294.7 167 86.8
SMO115G0194 Selaginella moellendorffii HOM05D004373 ORTHO05D005203 8.1e-73 278.1 216 62.0
CBR_g50290 Chara braunii HOM05D004373 ORTHO05D005203 1.8e-72 276.9 251 53.4
Zm00001eb348030 Zea mays HOM05D004373 ORTHO05D005203 1.0e-67 261.2 179 71.5
PRCOL_00002744 Prasinoderma coloniale HOM05D004373 ORTHO05D005203 2.5e-66 256.5 239 51.9
BcaC02g11171 Brassica carinata HOM05D004373 ORTHO05D005203 3.3e-66 256.1 224 60.7
Zm00001eb347990 Zea mays HOM05D004373 ORTHO05D005203 5.6e-66 255.4 167 72.5
Sc12g0003760 Simmondsia chinensis HOM05D004373 ORTHO05D005203 4.8e-65 252.3 159 78.0
TAR626G1318 Trochodendron aralioides HOM05D004373 ORTHO05D005203 5.3e-64 248.8 145 84.8
MCO09G686 Micromonas commoda HOM05D004373 ORTHO05D005203 9.0e-64 248.1 251 52.2
Actinidia12819 Actinidia chinensis HOM05D003004 ORTHO05D005203 7.1e-61 238.4 206 64.6
SGA_v2.0_scaffold425G51480 Striga asiatica HOM05D004373 ORTHO05D005203 1.0e-59 234.6 250 56.0
QL07p048830 Quercus lobata HOM05D004373 ORTHO05D005203 3.0e-59 233.0 191 66.0
Gohir.A01G174700 Gossypium hirsutum HOM05D004373 ORTHO05D005203 8.7e-59 231.5 138 83.3
Haze_26971 Corylus avellana HOM05D004373 ORTHO05D005203 1.3e-57 227.6 241 44.4
HPP92_000565 Vanilla planifolia HOM05D004373 ORTHO05D005203 4.8e-57 225.7 139 78.4
Zm00001eb348180 Zea mays HOM05D004373 ORTHO05D005203 6.7e-51 205.3 133 73.7
GSVIVG01003300001 Vitis vinifera HOM05D004373 ORTHO05D005203 2.5e-50 203.4 130 80.0
Cre10.g423750 Chlamydomonas reinhardtii HOM05D004373 ORTHO05D005203 3.3e-50 203.0 238 44.1
Hund07740 Selenicereus undatus HOM05D004373 ORTHO05D005203 9.6e-50 201.4 152 66.4
QL08p043446 Quercus lobata HOM05D004373 ORTHO05D005203 6.9e-48 195.3 110 86.4
GSVIVG01003298001 Vitis vinifera HOM05D004373 ORTHO05D005203 1.7e-46 190.7 100 88.0
Os06g0152400 Oryza sativa ssp. japonica HOM05D004373 ORTHO05D005203 3.8e-46 189.5 152 58.6
AUR62024008 Chenopodium quinoa HOM05D004373 ORTHO05D005203 3.2e-45 186.4 112 78.6
AL283U10040 Arabidopsis lyrata HOM05D004373 ORTHO05D005203 9.3e-45 184.9 111 76.6
Nitab4.5_0002737g0030 Nicotiana tabacum HOM05D004373 ORTHO05D005203 6.0e-44 182.2 155 60.0
C04p19750 Brassica napus HOM05D004373 ORTHO05D005203 1.0e-43 181.4 136 68.4
BolC4t23508H Brassica oleracea HOM05D004373 ORTHO05D005203 1.0e-43 181.4 136 68.4
Ca_29372_v3 Cicer arietinum L. HOM05D004373 ORTHO05D005203 1.6e-41 174.1 244 39.3
BcaC02g11170 Brassica carinata HOM05D004373 ORTHO05D005203 3.4e-39 166.4 164 56.7
Nitab4.5_0002737g0010 Nicotiana tabacum HOM05D004373 ORTHO05D005203 3.4e-39 166.4 92 87.0
Manes.12G052251 Manihot esculenta HOM05D004373 ORTHO05D005203 4.6e-36 156.0 80 92.5
Haze_27054 Corylus avellana HOM05D004373 ORTHO05D005203 1.5e-34 151.0 216 39.4
SEGI_21332 Sequoiadendron giganteum HOM05D004373 ORTHO05D005203 1.5e-34 151.0 82 80.5
Mapoly0024s0082 Marchantia polymorpha HOM05D004373 ORTHO05D005203 5.7e-34 149.1 125 58.4
Cfa026944 Carpinus fangiana HOM05D001144 ORTHO05D125916 1.6e-33 147.5 248 36.7
QL08p043443 Quercus lobata HOM05D004373 ORTHO05D005203 5.3e-32 142.5 76 86.8
TAR626G1796 Trochodendron aralioides HOM05D004034 ORTHO05D004210 5.3e-32 142.5 75 84.0
Zm00001eb348170 Zea mays HOM05D004373 ORTHO05D005203 1.6e-28 131.0 76 73.7
Oeu051655.1 Olea europaea HOM05D004373 ORTHO05D005203 6.1e-28 129.0 66 87.9
Zm00001eb347980 Zea mays HOM05D004373 ORTHO05D005203 1.2e-23 114.8 247 30.8
CSS0011448 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 1.5e-23 114.4 56 89.3
CSS0048638 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 1.5e-23 114.4 63 84.1
C04p19740 Brassica napus HOM05D004373 ORTHO05D005203 3.4e-23 113.2 82 64.6
Actinidia28382 Actinidia chinensis HOM05D004373 ORTHO05D005203 2.9e-22 110.2 90 61.1
BolC4t23507H Brassica oleracea HOM05D004373 ORTHO05D005203 1.1e-18 98.2 59 72.9
Oeu025155.1 Olea europaea HOM05D004373 ORTHO05D005203 1.8e-16 90.9 56 71.4
Cpa.g.sc50.65 Carica papaya HOM05D004373 ORTHO05D005203 3.1e-16 90.1 81 56.8
CSS0023039 Camellia sinensis var. sinensis HOM05D004373 ORTHO05D005203 1.6e-15 87.8 114 43.9
RcHm_v2.0_Chr4g0436731 Rosa chinensis HOM05D004373 ORTHO05D005203 2.2e-14 84.0 47 78.7
SEGI_33824 Sequoiadendron giganteum HOM05D004373 ORTHO05D005203 2.5e-13 80.5 59 55.9
AagrBONN_evm.TU.Sc2ySwM_117.1522 Anthoceros agrestis HOM05D002041 ORTHO05D002364 1.3e-09 68.2 102 38.2
BraA05t20404Z Brassica rapa HOM05D004373 ORTHO05D005203 2.7e-07 60.5 45 64.4
Zm00001eb348000 Zea mays HOM05D004373 ORTHO05D005203 7.7e-07 58.9 76 40.8


User provided reference genes

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