Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.014G091300 Populus trichocarpa HOM05D003721 ORTHO05D004303 0.0e+00 1406.0 775 100.0
Sabra14G0066200 Salix brachista HOM05D003721 ORTHO05D004303 0.0e+00 1246.1 822 86.7
Potri.002G165500 Populus trichocarpa HOM05D003721 ORTHO05D004303 0.0e+00 1177.2 783 84.5
Manes.07G084500 Manihot esculenta HOM05D003721 ORTHO05D004303 1.2e-266 923.3 790 70.3
Atru.chr5.592 Acer truncatum HOM05D003721 ORTHO05D004303 9.7e-256 887.1 801 65.3
Dinv32529 Davidia involucrata HOM05D003721 ORTHO05D004303 5.5e-251 871.3 799 66.1
Thecc.01G351200 Theobroma cacao HOM05D003721 ORTHO05D004303 1.3e-244 850.1 789 64.9
COL.COLO4_06374 Corchorus olitorius HOM05D003721 ORTHO05D004303 6.5e-244 847.8 789 64.5
Duzib133G0509 Durio zibethinus HOM05D003721 ORTHO05D004303 1.0e-241 840.5 787 64.5
TWI59G1183 Tripterygium wilfordii HOM05D003721 ORTHO05D004303 3.0e-241 839.0 798 64.7
Cfa003861 Carpinus fangiana HOM05D003721 ORTHO05D004303 5.0e-236 821.6 797 64.0
TAR629G3186 Trochodendron aralioides HOM05D003721 ORTHO05D004303 1.0e-233 813.9 810 61.1
CSS0038344 Camellia sinensis var. sinensis HOM05D003721 ORTHO05D004303 4.1e-230 802.0 783 62.8
CSS0014201 Camellia sinensis var. sinensis HOM05D003721 ORTHO05D004303 1.6e-229 800.0 783 62.6
Dinv43871 Davidia involucrata HOM05D003721 ORTHO05D004303 9.5e-227 790.8 793 61.5
Nn1g01721 Nelumbo nucifera HOM05D003721 ORTHO05D004303 1.6e-226 790.0 806 60.4
Ciclev10018933m.g Citrus clementina HOM05D003721 ORTHO05D004303 2.0e-224 783.1 791 61.2
CiPaw.01G068800 Carya illinoinensis HOM05D003721 ORTHO05D004303 2.9e-220 769.2 800 61.8
QL04p055909 Quercus lobata HOM05D003721 ORTHO05D004303 1.2e-218 763.8 805 60.2
Glyma.07G062500 Glycine max HOM05D003721 ORTHO05D004303 1.4e-209 733.8 806 58.2
FAN03G0785 Fragaria x ananassa HOM05D003721 ORTHO05D004303 3.1e-209 732.6 787 59.8
Gohir.A11G093000 Gossypium hirsutum HOM05D003721 ORTHO05D004303 2.6e-208 729.6 769 59.3
Gohir.D12G110000 Gossypium hirsutum HOM05D003721 ORTHO05D004303 2.6e-208 729.6 785 58.6
CANSAT94G0013 Cannabis sativa HOM05D003721 ORTHO05D004303 1.3e-207 727.2 791 57.9
GSVIVG01027009001 Vitis vinifera HOM05D003721 ORTHO05D004303 1.7e-207 726.9 722 62.3
Duzib138G0478 Durio zibethinus HOM05D003721 ORTHO05D004303 1.1e-206 724.2 819 56.4
CSS0042065 Camellia sinensis var. sinensis HOM05D003721 ORTHO05D004303 4.6e-205 718.8 802 58.2
MD07G1130300 Malus domestica HOM05D003721 ORTHO05D004303 1.3e-204 717.2 790 58.1
Lj7A506T70 Lonicera japonica HOM05D003721 ORTHO05D004303 3.3e-203 712.6 784 59.9
RcHm_v2.0_Chr1g0357861 Rosa chinensis HOM05D003721 ORTHO05D004303 5.6e-203 711.8 788 58.4
Lalb_Chr17g0338961 Lupinus albus HOM05D003721 ORTHO05D004303 9.5e-203 711.1 801 57.2
FAN10G1929 Fragaria x ananassa HOM05D003721 ORTHO05D004303 2.8e-202 709.5 787 58.4
FAN10G1794 Fragaria x ananassa HOM05D003721 ORTHO05D004303 8.9e-201 704.5 787 58.2
Rhsim07G0009400 Rhododendron simsii HOM05D003721 ORTHO05D004303 2.0e-200 703.4 939 50.3
arahy.Tifrunner.gnm1.ann1.X01UQ7 Arachis hypogaea HOM05D003721 ORTHO05D004303 6.4e-199 698.4 809 56.2
Sabra02G0146000 Salix brachista HOM05D003721 ORTHO05D004303 2.4e-198 696.4 597 70.0
FvH4_7g15532 Fragaria vesca HOM05D003721 ORTHO05D004303 4.1e-198 695.7 788 58.1
Glyma.18G239200 Glycine max HOM05D003721 ORTHO05D004303 4.1e-198 695.7 794 56.7
Actinidia20169 Actinidia chinensis HOM05D003721 ORTHO05D004303 3.5e-197 692.6 806 55.8
FAN06G3247 Fragaria x ananassa HOM05D003721 ORTHO05D004303 7.8e-197 691.4 787 57.7
vmacro13221 Vaccinium macrocarpon HOM05D003721 ORTHO05D004303 1.0e-196 691.0 834 54.2
AUR62022625 Chenopodium quinoa HOM05D003721 ORTHO05D004303 3.9e-196 689.1 693 59.6
Cc02_g38690 Coffea canephora HOM05D003721 ORTHO05D004303 3.9e-196 689.1 784 55.6
Glyma.16G030600 Glycine max HOM05D003721 ORTHO05D004303 5.1e-196 688.7 800 56.0
Gohir.A12G106100 Gossypium hirsutum HOM05D003721 ORTHO05D004303 2.5e-195 686.4 783 56.1
AUR62004419 Chenopodium quinoa HOM05D003721 ORTHO05D004303 3.3e-195 686.0 772 55.4
Glyma.09G253700 Glycine max HOM05D003721 ORTHO05D004303 4.7e-194 682.2 797 56.5
arahy.Tifrunner.gnm1.ann1.J8U9TP Arachis hypogaea HOM05D003721 ORTHO05D004303 2.4e-193 679.9 807 55.3
Ca_07946_v3 Cicer arietinum L. HOM05D003721 ORTHO05D004303 1.5e-192 677.2 803 54.5
Sed0001790 Sechium edule HOM05D003721 ORTHO05D004303 5.8e-192 675.2 797 56.0
TPR.G29569 Trifolium pratense HOM05D003721 ORTHO05D004303 3.8e-191 672.5 791 55.6
VMungo0331G1476 Vigna mungo HOM05D003721 ORTHO05D004303 3.8e-191 672.5 827 53.3
FAN06G4946 Fragaria x ananassa HOM05D003721 ORTHO05D004303 4.9e-191 672.2 811 55.7
Sc23g0002500 Simmondsia chinensis HOM05D003721 ORTHO05D004303 6.4e-191 671.8 795 56.1
PGR031G3178 Punica granatum HOM05D003721 ORTHO05D004303 1.1e-190 671.0 784 55.4
Solyc01g095210.3 Solanum lycopersicum HOM05D003721 ORTHO05D004303 2.1e-189 666.8 783 55.4
Prupe.2G178900 Prunus persica HOM05D003721 ORTHO05D004303 2.7e-189 666.4 798 55.4
Lj1g0019249 Lotus japonicus HOM05D003721 ORTHO05D004303 3.5e-189 666.0 805 53.8
Sopen01g039000 Solanum pennellii HOM05D003721 ORTHO05D004303 7.8e-189 664.8 780 54.4
Eucgr.D02329 Eucalyptus grandis HOM05D003721 ORTHO05D004303 2.5e-187 659.8 791 54.9
Peaxi162Scf00020g01717 Petunia axillaris HOM05D003721 ORTHO05D004303 2.1e-186 656.8 798 54.9
arahy.Tifrunner.gnm1.ann1.QXLJ4L Arachis hypogaea HOM05D003721 ORTHO05D004303 4.8e-186 655.6 782 54.9
Gorai.007G104100 Gossypium raimondii HOM05D003721 ORTHO05D004303 1.8e-185 653.7 787 54.4
PSO170G3080 Papaver somniferum HOM05D003721 ORTHO05D004303 3.1e-185 652.9 803 53.3
Hund16678 Selenicereus undatus HOM05D003721 ORTHO05D004303 4.4e-184 649.0 764 56.4
EL10Ac1g00346 Beta vulgaris HOM05D003721 ORTHO05D004303 7.6e-184 648.3 780 54.4
Medtr7g079200 Medicago truncatula HOM05D003721 ORTHO05D004303 6.4e-183 645.2 789 53.0
DCAR_008641 Daucus carota HOM05D003721 ORTHO05D004303 7.1e-182 641.7 811 54.1
Gorai.008G119300 Gossypium raimondii HOM05D003721 ORTHO05D004303 7.1e-182 641.7 786 53.9
arahy.Tifrunner.gnm1.ann1.M56506 Arachis hypogaea HOM05D003721 ORTHO05D004303 2.7e-181 639.8 782 53.8
CAN.G78.136 Capsicum annuum HOM05D003721 ORTHO05D004303 1.3e-180 637.5 791 54.4
MBI07_g11740_MAGBIO Magnolia biondii HOM05D003721 ORTHO05D004303 1.4e-177 627.5 813 53.0
Haze_15575 Corylus avellana HOM05D003721 ORTHO05D004303 4.5e-176 622.5 609 64.0
CsaV3_6G000920 Cucumis sativus L. HOM05D003721 ORTHO05D004303 2.2e-175 620.2 804 52.7
Haze_15580 Corylus avellana HOM05D003721 ORTHO05D004303 3.8e-175 619.4 609 63.7
SGA_v2.0_scaffold95G28800 Striga asiatica HOM05D003721 ORTHO05D004303 3.8e-175 619.4 794 52.9
ECA240G1536 Erigeron canadensis HOM05D003721 ORTHO05D004303 2.1e-173 613.6 781 53.0
Sed0002636 Sechium edule HOM05D003721 ORTHO05D004303 4.6e-173 612.5 796 51.6
PSO063G0643 Papaver somniferum HOM05D003721 ORTHO05D004303 1.0e-172 611.3 803 51.2
Phvul.010G105500 Phaseolus vulgaris HOM05D003721 ORTHO05D004303 1.0e-172 611.3 730 54.8
Ah.05g180090 Amaranthus hybridus HOM05D003721 ORTHO05D004303 5.1e-172 609.0 781 53.0
Nitab4.5_0003501g0020 Nicotiana tabacum HOM05D003721 ORTHO05D004303 1.2e-165 587.8 785 50.6
Ca_03491_v3 Cicer arietinum L. HOM05D003721 ORTHO05D004303 1.6e-165 587.4 804 50.9
MD01G1072600 Malus domestica HOM05D003721 ORTHO05D004303 2.7e-165 586.6 787 51.3
ClCG06G003380 Citrullus lanatus HOM05D003721 ORTHO05D004303 3.9e-164 582.8 856 48.1
TPR.G18168 Trifolium pratense HOM05D003721 ORTHO05D004303 8.7e-164 581.6 805 50.9
Cpa.g.sc11.59 Carica papaya HOM05D003721 ORTHO05D004303 5.7e-163 578.9 525 65.9
Nitab4.5_0000915g0020 Nicotiana tabacum HOM05D003721 ORTHO05D004303 2.4e-161 573.5 782 50.0
Thhalv10005812m.g Eutrema salsugineum HOM05D003721 ORTHO05D004303 3.4e-160 569.7 787 48.2
Sp5g01840 Schrenkiella parvula HOM05D003721 ORTHO05D004303 7.6e-160 568.5 786 49.0
Psat3g105680 Pisum sativum HOM05D003721 ORTHO05D004303 1.0e-159 568.2 639 56.8
AL4G45430 Arabidopsis lyrata HOM05D003721 ORTHO05D004303 1.7e-159 567.4 794 50.0
HanXRQChr06g0166991 Helianthus annuus HOM05D003721 ORTHO05D004303 4.9e-159 565.8 704 55.0
AT2G46180 Arabidopsis thaliana HOM05D003721 ORTHO05D004303 4.2e-158 562.8 791 49.2
Aqoxy5G04062 Aquilegia oxysepala HOM05D003721 ORTHO05D004303 7.1e-158 562.0 809 48.5
Gohir.D11G097866 Gossypium hirsutum HOM05D003721 ORTHO05D004303 1.3e-156 557.8 616 57.1
Migut.B01806 Erythranthe guttata HOM05D003721 ORTHO05D004303 1.8e-156 557.4 794 48.7
Phvul.008G057500 Phaseolus vulgaris HOM05D003721 ORTHO05D004303 1.1e-155 554.7 815 48.8
SalBow3G1665 Salvia bowleyana HOM05D003721 ORTHO05D004303 5.3e-153 545.8 781 48.8
Medtr8g028445 Medicago truncatula HOM05D003721 ORTHO05D004303 6.9e-153 545.4 800 48.4
A09p53630 Brassica napus HOM05D003721 ORTHO05D004303 1.7e-151 540.8 790 47.6
Thhalv10001332m.g Eutrema salsugineum HOM05D003721 ORTHO05D004303 3.8e-151 539.7 791 48.0
BcaC07g40669 Brassica carinata HOM05D003721 ORTHO05D004303 6.5e-151 538.9 790 47.5
C08p36410 Brassica napus HOM05D003721 ORTHO05D004303 6.5e-151 538.9 790 47.5
BolC8t51224H Brassica oleracea HOM05D003721 ORTHO05D004303 1.1e-150 538.1 790 47.5
Sp5g32820 Schrenkiella parvula HOM05D003721 ORTHO05D004303 1.6e-149 534.3 792 48.4
BraA09t40785Z Brassica rapa HOM05D003721 ORTHO05D004303 2.1e-149 533.9 790 47.3
C06p27570 Brassica napus HOM05D003721 ORTHO05D004303 4.6e-149 532.7 781 47.0
AT3G61570 Arabidopsis thaliana HOM05D003721 ORTHO05D004303 2.2e-146 523.9 784 46.7
A07p25580 Brassica napus HOM05D003721 ORTHO05D004303 2.4e-145 520.4 701 50.1
THA.LOC104817323 Tarenaya hassleriana HOM05D003721 ORTHO05D004303 3.1e-145 520.0 787 47.4
BcaC07g40653 Brassica carinata HOM05D003721 ORTHO05D004303 3.4e-144 516.5 799 47.3
Lsat_1_v5_gn_3_138600 Lactuca sativa HOM05D003721 ORTHO05D004303 3.4e-144 516.5 789 47.8
MELO3C021177.2 Cucumis melo HOM05D003721 ORTHO05D004303 2.2e-143 513.8 703 51.4
ATR1093G009 Amborella trichopoda HOM05D003721 ORTHO05D004303 8.5e-143 511.9 795 46.3
BraA07t30199Z Brassica rapa HOM05D003721 ORTHO05D004303 8.5e-143 511.9 717 49.2
Oeu010635.1 Olea europaea HOM05D003721 ORTHO05D004303 1.1e-142 511.5 850 45.3
BolC6t37925H Brassica oleracea HOM05D003721 ORTHO05D004303 7.2e-142 508.8 793 45.8
AL5G43940 Arabidopsis lyrata HOM05D003721 ORTHO05D004303 1.6e-141 507.7 784 46.3
MSTRG.20868 Avicennia marina HOM05D003721 ORTHO05D004303 1.8e-140 504.2 792 47.3
VMungo1383G3272 Vigna mungo HOM05D003721 ORTHO05D004303 3.0e-140 503.4 731 49.0
BcaC08g45136 Brassica carinata HOM05D003721 ORTHO05D004303 4.8e-138 496.1 782 45.4
HPP92_023080 Vanilla planifolia HOM05D003721 ORTHO05D004303 4.1e-137 493.0 780 46.2
CDE02G2110 Ceratophyllum demersum HOM05D003721 ORTHO05D004303 1.5e-136 491.1 774 45.0
Lalb_Chr04g0259321 Lupinus albus HOM05D003721 ORTHO05D004303 4.5e-136 489.6 521 57.8
Aa31LG1G27570 Aethionema arabicum HOM05D003721 ORTHO05D004303 2.2e-135 487.3 785 45.9
BcaC07g42682 Brassica carinata HOM05D003721 ORTHO05D004303 2.3e-132 477.2 678 48.2
Carub.0004s2886 Capsella rubella HOM05D003721 ORTHO05D004303 5.7e-131 472.6 789 45.6
CDE08G1001 Ceratophyllum demersum HOM05D003721 ORTHO05D004303 1.3e-127 461.5 772 43.5
BcaB02g07370 Brassica carinata HOM05D003721 ORTHO05D004303 2.5e-126 457.2 707 46.7
unitig_52.g17061 Utricularia gibba HOM05D003721 ORTHO05D004303 1.3e-122 444.9 732 45.8
Zm00001eb042060 Zea mays HOM05D003721 ORTHO05D004303 1.6e-117 427.9 752 43.0
BcaC07g42673 Brassica carinata HOM05D003721 ORTHO05D004303 2.3e-108 397.5 711 43.3
PGSC0003DMG400000197 Solanum tuberosum HOM05D003721 ORTHO05D004303 3.7e-106 390.2 372 64.0
CARHR141460 Cardamine hirsuta HOM05D003721 ORTHO05D004303 1.8e-105 387.9 495 51.3
Os08g0386900 Oryza sativa ssp. japonica HOM05D003721 ORTHO05D004303 4.6e-96 356.7 371 59.6
Mapoly0053s0042 Marchantia polymorpha HOM05D003721 ORTHO05D004303 7.8e-96 355.9 734 38.3
SEGI_16602 Sequoiadendron giganteum HOM05D003721 ORTHO05D004303 2.9e-90 337.4 360 56.9
Hma1.2p1_0623F.1_g191170 Hydrangea macrophylla HOM05D003721 ORTHO05D004303 6.4e-90 336.3 382 57.3
TPR.G35781 Trifolium pratense HOM05D003721 ORTHO05D004303 3.6e-77 293.9 388 50.8
BcaC07g40657 Brassica carinata HOM05D003721 ORTHO05D004303 1.3e-61 242.3 251 60.2
Pp3c12_14500 Physcomitrium patens HOM05D003721 ORTHO05D004303 8.1e-61 239.6 337 48.1
QL01p002178 Quercus lobata HOM05D003721 ORTHO05D004303 5.8e-59 233.4 338 50.9
Pp3c3_18730 Physcomitrium patens HOM05D003721 ORTHO05D004303 8.4e-58 229.6 733 32.1
Actinidia10078 Actinidia chinensis HOM05D003721 ORTHO05D004303 5.5e-57 226.9 406 42.6
Haze_15579 Corylus avellana HOM05D003721 ORTHO05D004303 2.6e-51 208.0 191 63.9
Actinidia37722 Actinidia chinensis HOM05D003721 ORTHO05D004074 3.8e-50 204.1 394 42.6
AagrBONN_evm.TU.Sc2ySwM_369.3 Anthoceros agrestis HOM05D003721 ORTHO05D004303 4.6e-48 197.2 324 40.7
Haze_15574 Corylus avellana HOM05D003721 ORTHO05D004303 2.1e-40 171.8 171 59.6
arahy.Tifrunner.gnm1.ann1.LL4IHI Arachis hypogaea HOM05D003721 ORTHO05D004303 1.5e-38 165.6 145 61.4
BcaC08g45231 Brassica carinata HOM05D003721 ORTHO05D004303 5.9e-35 153.7 145 61.4
Cpa.g.sc11.56 Carica papaya HOM05D003721 ORTHO05D004303 9.7e-30 136.3 104 73.1
SGA_v2.0_scaffold4G02274 Striga asiatica HOM05D003721 ORTHO05D004303 1.7e-29 135.6 183 50.8
SHI13345 Sapria himalayana HOM05D003721 ORTHO05D004303 1.9e-25 122.1 120 60.0
SEGI_39264 Sequoiadendron giganteum HOM05D003721 ORTHO05D004303 2.1e-24 118.6 364 30.8
Actinidia37723 Actinidia chinensis HOM05D003721 ORTHO05D004303 6.7e-23 113.6 202 43.6
Lalb_Chr04g0259331 Lupinus albus HOM05D003721 ORTHO05D004303 1.7e-21 109.0 280 35.4
BcaC08g45137 Brassica carinata HOM05D003721 ORTHO05D004303 4.5e-19 100.9 324 32.7
Actinidia10079 Actinidia chinensis HOM05D003721 ORTHO05D004303 3.2e-17 94.7 84 67.9
Actinidia21288 Actinidia chinensis HOM05D003721 ORTHO05D004303 8.8e-15 86.7 62 75.8
CBR_g40304 Chara braunii HOM05D001539 ORTHO05D000937 3.7e-13 81.3 159 36.5
Carub.0005s2826 Capsella rubella HOM05D003721 ORTHO05D004303 1.1e-12 79.7 227 33.9
MCO16G164 Micromonas commoda HOM05D003721 ORTHO05D004303 9.1e-12 76.6 287 27.5
Cre12.g495800 Chlamydomonas reinhardtii HOM05D003721 ORTHO05D004303 2.0e-11 75.5 203 32.5
Actinidia10077 Actinidia chinensis HOM05D003721 ORTHO05D004303 1.0e-10 73.2 156 41.0
Rhsim05G0209700 Rhododendron simsii HOM05D003721 ORTHO05D004303 1.7e-10 72.4 74 56.8
Rhsim11G0030600 Rhododendron simsii HOM05D003721 ORTHO05D004303 1.7e-10 72.4 74 58.1
Migut.H02011 Erythranthe guttata HOM05D005133 ORTHO05D006685 1.5e-09 69.3 524 26.7
arahy.Tifrunner.gnm1.ann1.W0C6E5 Arachis hypogaea HOM05D000200 ORTHO05D000262 5.5e-09 67.4 112 45.5
arahy.Tifrunner.gnm1.ann1.EAH0NM Arachis hypogaea HOM05D003721 ORTHO05D004303 4.7e-08 64.3 68 55.9
arahy.Tifrunner.gnm1.ann1.4H30G8 Arachis hypogaea HOM05D003721 ORTHO05D004303 5.2e-07 60.8 68 52.9
arahy.Tifrunner.gnm1.ann1.B4ZXCR Arachis hypogaea HOM05D003721 ORTHO05D004303 5.2e-07 60.8 70 51.4
arahy.Tifrunner.gnm1.ann1.TR1UXP Arachis hypogaea HOM05D003721 ORTHO05D004303 3.4e-06 58.2 68 51.5


User provided reference genes

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