Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.014G089800 Populus trichocarpa HOM05D004687 ORTHO05D006002 1.8e-304 1048.5 539 100.0
Sabra14G0065300 Salix brachista HOM05D004687 ORTHO05D006002 2.4e-261 905.2 545 88.1
Manes.01G252600 Manihot esculenta HOM05D004687 ORTHO05D006002 5.5e-157 558.5 551 59.5
Dinv32519 Davidia involucrata HOM05D004687 ORTHO05D006002 8.8e-139 498.0 557 52.4
CiPaw.02G034500 Carya illinoinensis HOM05D004687 ORTHO05D006002 1.1e-133 481.1 553 51.9
TAR374G1208 Trochodendron aralioides HOM05D004687 ORTHO05D006002 1.1e-133 481.1 565 51.9
Atru.chr5.577 Acer truncatum HOM05D004687 ORTHO05D006002 7.2e-133 478.4 553 50.6
Atru.chr5.560 Acer truncatum HOM05D004687 ORTHO05D006002 2.3e-131 473.4 553 50.5
Lj7A508T42 Lonicera japonica HOM05D004687 ORTHO05D006002 3.8e-126 456.1 549 50.1
Sed0003221 Sechium edule HOM05D004687 ORTHO05D006002 6.6e-126 455.3 545 50.5
CANSAT56G3669 Cannabis sativa HOM05D004687 ORTHO05D006002 1.1e-125 454.5 553 49.0
Cc02_g38540 Coffea canephora HOM05D004687 ORTHO05D006002 2.5e-125 453.4 548 49.8
TWI14G1112 Tripterygium wilfordii HOM05D004687 ORTHO05D006002 4.4e-122 442.6 552 51.1
Nn1g01677 Nelumbo nucifera HOM05D004687 ORTHO05D006002 5.7e-122 442.2 525 50.3
Nitab4.5_0000915g0140 Nicotiana tabacum HOM05D004687 ORTHO05D006002 3.7e-121 439.5 560 47.7
Cfa003875 Carpinus fangiana HOM05D004687 ORTHO05D006002 1.8e-120 437.2 525 50.5
Thecc.01G352900 Theobroma cacao HOM05D004687 ORTHO05D006002 3.2e-120 436.4 535 50.5
PGSC0003DMG400000194 Solanum tuberosum HOM05D004687 ORTHO05D006002 5.4e-120 435.6 558 47.7
Solyc01g095090.3 Solanum lycopersicum HOM05D004687 ORTHO05D006002 9.2e-120 434.9 540 47.8
GSVIVG01026963001 Vitis vinifera HOM05D004687 ORTHO05D006002 2.0e-119 433.7 541 50.5
Prupe.2G177100 Prunus persica HOM05D004687 ORTHO05D006002 2.7e-119 433.3 546 48.5
Eucgr.D02323 Eucalyptus grandis HOM05D004687 ORTHO05D006002 4.5e-119 432.6 544 49.6
QL04p055402 Quercus lobata HOM05D004687 ORTHO05D006002 5.9e-119 432.2 658 43.6
ClCG06G003410 Citrullus lanatus HOM05D004687 ORTHO05D006002 2.3e-118 430.3 542 49.1
Gohir.D11G097000 Gossypium hirsutum HOM05D004687 ORTHO05D006002 5.0e-118 429.1 525 50.5
CSS0026327 Camellia sinensis var. sinensis HOM05D004687 ORTHO05D006002 6.6e-118 428.7 548 48.0
Gorai.007G103300 Gossypium raimondii HOM05D004687 ORTHO05D006002 8.6e-118 428.3 529 49.9
Sc01g0003240 Simmondsia chinensis HOM05D004687 ORTHO05D006002 1.5e-117 427.6 547 47.7
Cpa.g.sc184.31 Carica papaya HOM05D004687 ORTHO05D006002 1.2e-116 424.5 548 49.3
Duzib138G0011 Durio zibethinus HOM05D004687 ORTHO05D006002 6.1e-116 422.2 534 49.6
COL.COLO4_12774 Corchorus olitorius HOM05D004687 ORTHO05D006002 1.4e-115 421.0 532 49.6
Oeu063679.1 Olea europaea HOM05D004687 ORTHO05D006002 4.0e-115 419.5 550 46.4
Peaxi162Scf00020g01410 Petunia axillaris HOM05D004687 ORTHO05D006002 1.5e-114 417.5 547 47.5
Aqoxy7G00187 Aquilegia oxysepala HOM05D004687 ORTHO05D006002 4.4e-114 416.0 573 44.5
MSTRG.20861 Avicennia marina HOM05D004687 ORTHO05D006002 9.8e-114 414.8 544 46.1
Ciclev10019565m.g Citrus clementina HOM05D004687 ORTHO05D006002 1.1e-112 411.4 541 48.6
Lj3g0008911 Lotus japonicus HOM05D004687 ORTHO05D006002 1.1e-112 411.4 535 46.4
DCAR_006947 Daucus carota HOM05D004687 ORTHO05D006002 5.4e-112 409.1 552 45.5
Glyma.16G032000 Glycine max HOM05D004687 ORTHO05D006002 5.4e-112 409.1 559 45.4
VMungo0331G0070 Vigna mungo HOM05D004687 ORTHO05D006002 7.8e-111 405.2 539 46.6
Migut.B01796 Erythranthe guttata HOM05D004687 ORTHO05D006002 1.3e-110 404.4 527 45.9
Phvul.010G104100 Phaseolus vulgaris HOM05D004687 ORTHO05D006002 1.7e-110 404.1 545 46.6
MELO3C021180.2 Cucumis melo HOM05D004687 ORTHO05D006002 2.3e-110 403.7 563 47.2
Psat4g212240 Pisum sativum HOM05D004687 ORTHO05D006002 2.1e-108 397.1 539 46.2
PSO478G3840 Papaver somniferum HOM05D004687 ORTHO05D006002 2.8e-108 396.7 569 44.5
Medtr8g028580 Medicago truncatula HOM05D004687 ORTHO05D006002 1.8e-107 394.0 530 45.1
Nitab4.5_0009238g0010 Nicotiana tabacum HOM05D004687 ORTHO05D006002 1.8e-107 394.0 550 45.6
arahy.Tifrunner.gnm1.ann1.PSKN5N Arachis hypogaea HOM05D004687 ORTHO05D006002 8.9e-107 391.7 552 44.2
arahy.Tifrunner.gnm1.ann1.X9JZY0 Arachis hypogaea HOM05D004687 ORTHO05D006002 8.9e-107 391.7 555 44.0
PSO266G0021 Papaver somniferum HOM05D004687 ORTHO05D006002 7.5e-106 388.7 574 43.7
RcHm_v2.0_Chr1g0357651 Rosa chinensis HOM05D004687 ORTHO05D006002 1.4e-104 384.4 570 44.2
Lalb_Chr10g0096671 Lupinus albus HOM05D004687 ORTHO05D006002 3.2e-104 383.3 541 44.2
CSS0036615 Camellia sinensis var. sinensis HOM05D004687 ORTHO05D006002 9.2e-104 381.7 539 44.0
Ca_03498_v3 Cicer arietinum L. HOM05D004687 ORTHO05D006002 1.2e-103 381.3 535 43.6
Lsat_1_v5_gn_7_3881 Lactuca sativa HOM05D004687 ORTHO05D006002 1.2e-103 381.3 508 44.3
THA.LOC104817038 Tarenaya hassleriana HOM05D004687 ORTHO05D006002 1.6e-103 380.9 504 45.0
PGR031G1931 Punica granatum HOM05D004687 ORTHO05D006002 4.6e-103 379.4 544 44.9
MBI04_g26968_MAGBIO Magnolia biondii HOM05D004687 ORTHO05D006002 6.6e-102 375.6 550 45.3
MD01G1070600 Malus domestica HOM05D004687 ORTHO05D006002 1.1e-101 374.8 534 44.8
Peaxi162Scf00403g00830 Petunia axillaris HOM05D004687 ORTHO05D006002 7.3e-101 372.1 520 44.8
Rhsim07G0010800 Rhododendron simsii HOM05D004687 ORTHO05D006002 4.0e-99 366.3 603 42.0
Hund27243 Selenicereus undatus HOM05D004687 ORTHO05D006002 8.9e-99 365.2 518 44.4
Thhalv10029490m.g Eutrema salsugineum HOM05D004687 ORTHO05D006002 1.3e-97 361.3 518 44.6
FAN10G0227 Fragaria x ananassa HOM05D004687 ORTHO05D006002 1.7e-97 360.9 558 42.5
CSS0041346 Camellia sinensis var. sinensis HOM05D004687 ORTHO05D006002 4.9e-97 359.4 460 48.0
FvH4_7g15320 Fragaria vesca HOM05D004687 ORTHO05D006002 8.3e-97 358.6 560 42.5
FAN06G2065 Fragaria x ananassa HOM05D004687 ORTHO05D006002 8.3e-97 358.6 560 42.5
Sopen05g028410 Solanum pennellii HOM05D004687 ORTHO05D006002 2.4e-96 357.1 505 44.8
FAN06G2774 Fragaria x ananassa HOM05D004687 ORTHO05D006002 5.4e-96 355.9 557 42.5
PGSC0003DMG400033881 Solanum tuberosum HOM05D004687 ORTHO05D006002 9.2e-96 355.1 507 44.2
Carub.0006s3633 Capsella rubella HOM05D004687 ORTHO05D006002 2.7e-95 353.6 513 44.2
Solyc05g050020.3 Solanum lycopersicum HOM05D004687 ORTHO05D006002 2.7e-95 353.6 505 44.4
AT4G01270 Arabidopsis thaliana HOM05D004687 ORTHO05D006002 3.5e-95 353.2 513 41.7
Sp6g00860 Schrenkiella parvula HOM05D004687 ORTHO05D006002 1.3e-94 351.3 523 41.9
Haze_15561 Corylus avellana HOM05D004687 ORTHO05D006002 3.0e-94 350.1 555 43.1
Aa31LG5G750 Aethionema arabicum HOM05D004687 ORTHO05D006002 2.5e-93 347.1 516 43.2
CARHR249040 Cardamine hirsuta HOM05D004687 ORTHO05D006002 3.3e-93 346.7 517 42.4
Ah.05g180180 Amaranthus hybridus HOM05D004687 ORTHO05D006002 5.6e-93 345.9 341 55.1
AL6G52120 Arabidopsis lyrata HOM05D004687 ORTHO05D006002 9.6e-93 345.1 519 42.6
BraA03t12367Z Brassica rapa HOM05D004687 ORTHO05D006002 2.1e-92 344.0 522 41.8
SalBow3G3455 Salvia bowleyana HOM05D004687 ORTHO05D006002 2.8e-92 343.6 603 39.8
BcaB01g02150 Brassica carinata HOM05D004687 ORTHO05D006002 8.1e-92 342.0 512 43.0
CSS0021310 Camellia sinensis var. sinensis HOM05D004687 ORTHO05D006002 2.4e-91 340.5 539 41.2
BcaC01g06853 Brassica carinata HOM05D004687 ORTHO05D006002 6.8e-91 339.0 517 42.6
BolC3t16169H Brassica oleracea HOM05D004687 ORTHO05D006002 8.9e-91 338.6 517 42.4
Actinidia20159 Actinidia chinensis HOM05D004687 ORTHO05D006002 1.2e-90 338.2 558 40.9
ECA236G1242 Erigeron canadensis HOM05D004687 ORTHO05D006002 2.0e-90 337.4 512 40.0
BraA09t35739Z Brassica rapa HOM05D004687 ORTHO05D006002 2.6e-90 337.0 519 43.7
A03p31950 Brassica napus HOM05D004687 ORTHO05D006002 4.4e-90 336.3 517 42.7
C03p38970 Brassica napus HOM05D004687 ORTHO05D006002 4.4e-90 336.3 521 43.0
BcaC04g24137 Brassica carinata HOM05D004687 ORTHO05D006002 1.3e-89 334.7 522 42.7
C09p00700 Brassica napus HOM05D004687 ORTHO05D006002 1.3e-89 334.7 522 42.7
BolC9t53004H Brassica oleracea HOM05D004687 ORTHO05D006002 1.3e-89 334.7 522 42.7
A09p00090 Brassica napus HOM05D004687 ORTHO05D006002 6.4e-89 332.4 514 43.2
unitig_699.g19806 Utricularia gibba HOM05D004687 ORTHO05D006002 4.8e-84 316.2 537 40.6
vmacro13232 Vaccinium macrocarpon HOM05D004687 ORTHO05D006002 6.2e-84 315.8 310 58.1
AUR62004410 Chenopodium quinoa HOM05D004687 ORTHO05D006002 3.1e-83 313.5 308 54.9
SGA_v2.0_scaffold95G28807 Striga asiatica HOM05D004687 ORTHO05D006002 3.1e-83 313.5 570 39.3
TPR.G28289 Trifolium pratense HOM05D004687 ORTHO05D006002 2.0e-82 310.8 500 41.8
Prupe.2G177000 Prunus persica HOM05D004687 ORTHO05D006002 1.3e-81 308.1 489 42.3
FAN10G4173 Fragaria x ananassa HOM05D004687 ORTHO05D006002 1.7e-81 307.8 555 38.6
Potri.002G164000 Populus trichocarpa HOM05D004687 ORTHO05D006002 3.8e-81 306.6 338 58.0
ATR0661G462 Amborella trichopoda HOM05D004687 ORTHO05D006002 4.9e-81 306.2 538 38.8
HanXRQChr04g0120761 Helianthus annuus HOM05D004687 ORTHO05D006002 6.4e-81 305.8 536 39.9
CsaV3_6G000900 Cucumis sativus L. HOM05D004687 ORTHO05D006002 1.6e-79 301.2 461 44.5
EL10Ac1g00358 Beta vulgaris HOM05D004687 ORTHO05D006002 1.9e-77 294.3 420 45.2
MD01G1070500 Malus domestica HOM05D004687 ORTHO05D006002 3.6e-76 290.0 484 39.7
HanXRQChr06g0170331 Helianthus annuus HOM05D004687 ORTHO05D006002 5.8e-74 282.7 509 38.5
SEGI_33633 Sequoiadendron giganteum HOM05D004687 ORTHO05D006002 9.9e-74 282.0 559 36.5
BcaB01g02289 Brassica carinata HOM05D004687 ORTHO05D006002 1.1e-72 278.5 515 40.4
Lalb_Chr17g0339021 Lupinus albus HOM05D004687 ORTHO05D006002 4.0e-67 260.0 227 59.5
Zm00001eb416420 Zea mays HOM05D004687 ORTHO05D006002 3.4e-66 256.9 558 34.6
Gohir.A11G092200 Gossypium hirsutum HOM05D004687 ORTHO05D006002 6.0e-63 246.1 387 42.6
Nitab4.5_0002262g0080 Nicotiana tabacum HOM05D004687 ORTHO05D006002 6.7e-62 242.7 289 50.2
Os08g0151700 Oryza sativa ssp. japonica HOM05D004687 ORTHO05D006002 5.7e-61 239.6 557 34.1
FvH4_1g19860 Fragaria vesca HOM05D004687 ORTHO05D006002 9.0e-59 232.3 269 49.4
RcHm_v2.0_Chr2g0111671 Rosa chinensis HOM05D004687 ORTHO05D006002 1.2e-58 231.9 266 49.2
FAN19G0767 Fragaria x ananassa HOM05D004687 ORTHO05D006002 2.6e-58 230.7 269 49.1
FAN28G2978 Fragaria x ananassa HOM05D004687 ORTHO05D006002 5.8e-58 229.6 269 49.1
FAN01G0098 Fragaria x ananassa HOM05D004687 ORTHO05D006002 1.1e-56 225.3 452 36.9
AUR62022616 Chenopodium quinoa HOM05D004687 ORTHO05D006002 3.2e-56 223.8 438 39.0
FAN26G2006 Fragaria x ananassa HOM05D004687 ORTHO05D006002 1.2e-55 221.9 269 49.1
SGA_v2.0_scaffold95G28804 Striga asiatica HOM05D004687 ORTHO05D006002 3.0e-54 217.2 282 45.7
Pp3c23_12760 Physcomitrium patens HOM05D004687 ORTHO05D006002 2.2e-52 211.1 280 40.7
SMO147G0044 Selaginella moellendorffii HOM05D004687 ORTHO05D006002 8.2e-52 209.1 297 40.7
CDE11G0743 Ceratophyllum demersum HOM05D002440 ORTHO05D002576 1.1e-45 188.7 399 36.3
Nitab4.5_0003779g0080 Nicotiana tabacum HOM05D004687 ORTHO05D006002 4.3e-45 186.8 255 45.5
FAN03G2011 Fragaria x ananassa HOM05D004687 ORTHO05D006002 2.2e-41 174.5 382 37.2
FAN23G1626 Fragaria x ananassa HOM05D004687 ORTHO05D006002 3.9e-38 163.7 272 40.4
SHI13366 Sapria himalayana HOM05D004687 ORTHO05D006002 6.7e-38 162.9 156 54.5
GSVIVG01013521001 Vitis vinifera HOM05D004687 ORTHO05D006002 9.7e-37 159.1 123 58.5
SHI13367 Sapria himalayana HOM05D004687 ORTHO05D006002 4.1e-35 153.7 354 35.3
MD01G1071100 Malus domestica HOM05D004687 ORTHO05D006002 9.1e-35 152.5 105 68.6
Sopen01g038880 Solanum pennellii HOM05D004687 ORTHO05D006002 3.5e-34 150.6 325 36.0
CBR_g45680 Chara braunii HOM05D004687 ORTHO05D006002 6.1e-31 139.8 429 28.7
QL06p033484 Quercus lobata HOM05D004687 ORTHO05D006002 1.8e-30 138.3 119 52.9
Actinidia10067 Actinidia chinensis HOM05D004687 ORTHO05D006002 8.2e-28 129.4 372 32.3
Aa31sc194G60 Aethionema arabicum HOM05D004687 ORTHO05D006002 5.0e-25 120.2 136 51.5
Lalb_Chr17g0339031 Lupinus albus HOM05D004687 ORTHO05D006002 1.3e-20 105.5 333 29.1
COL.COLO4_21921 Corchorus olitorius HOM05D004687 ORTHO05D006002 3.7e-20 104.0 102 50.0
vmacro13233 Vaccinium macrocarpon HOM05D004687 ORTHO05D006002 1.8e-19 101.7 107 48.6
Mapoly0091s0017 Marchantia polymorpha HOM05D004687 ORTHO05D006002 1.6e-18 98.6 286 27.6
ATR0804G028 Amborella trichopoda HOM05D004687 ORTHO05D006002 2.9e-17 94.4 130 43.8
PSO541G1518 Papaver somniferum HOM05D004687 ORTHO05D006002 3.8e-17 94.0 161 36.6
SGA_v2.0_scaffold95G28808 Striga asiatica HOM05D005821 ORTHO05D006649 3.8e-17 94.0 105 51.4
Actinidia20138 Actinidia chinensis HOM05D004687 ORTHO05D006002 1.6e-15 88.6 83 51.8
Ca_03421_v3 Cicer arietinum L. HOM05D004687 ORTHO05D006002 9.8e-13 79.3 123 42.3
AT4G01245 Arabidopsis thaliana HOM05D004687 ORTHO05D006002 4.7e-07 60.5 62 51.6
BraA03t10099Z Brassica rapa HOM05D004687 ORTHO05D016135 2.3e-06 58.2 72 48.6
BraA03t13898Z Brassica rapa HOM05D004687 ORTHO05D016135 2.3e-06 58.2 61 55.7
A03p47890 Brassica napus HOM05D004687 ORTHO05D016135 3.0e-06 57.8 72 48.6


User provided reference genes

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