Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.014G089100 Populus trichocarpa HOM05D006032 ORTHO05D007544 1.4e-142 509.6 263 100.0
Potri.002G154600 Populus trichocarpa HOM05D006032 ORTHO05D007544 7.2e-102 374.4 267 74.9
Sabra02G0122600 Salix brachista HOM05D006032 ORTHO05D007544 3.6e-101 372.1 269 74.0
Manes.01G253200 Manihot esculenta HOM05D006032 ORTHO05D007544 7.2e-94 347.8 263 68.8
Ciclev10021696m.g Citrus clementina HOM05D006032 ORTHO05D007544 2.1e-93 346.3 268 70.1
COL.COLO4_12764 Corchorus olitorius HOM05D006032 ORTHO05D007544 3.9e-92 342.0 265 67.5
Thecc.01G353900 Theobroma cacao HOM05D006032 ORTHO05D007544 3.9e-92 342.0 268 66.8
Atru.chr5.551 Acer truncatum HOM05D006032 ORTHO05D007544 6.7e-92 341.3 267 67.0
PGR031G1164 Punica granatum HOM05D006032 ORTHO05D007544 2.8e-90 335.9 267 67.4
GSVIVG01027006001 Vitis vinifera HOM05D006032 ORTHO05D007544 8.2e-90 334.3 266 66.5
Haze_15552 Corylus avellana HOM05D006032 ORTHO05D007544 1.4e-89 333.6 265 66.0
Hma1.2p1_2961F.1_g330870 Hydrangea macrophylla HOM05D006032 ORTHO05D007544 1.4e-89 333.6 269 65.8
Cfa003882 Carpinus fangiana HOM05D006032 ORTHO05D007544 2.4e-89 332.8 265 66.4
CANSAT56G0440 Cannabis sativa HOM05D006032 ORTHO05D007544 3.1e-89 332.4 265 65.7
Cpa.g.sc184.23 Carica papaya HOM05D006032 ORTHO05D007544 3.1e-89 332.4 265 65.7
Eucgr.D02319 Eucalyptus grandis HOM05D006032 ORTHO05D007544 2.6e-88 329.3 266 66.2
Cc02_g38440 Coffea canephora HOM05D006032 ORTHO05D007544 1.1e-86 323.9 262 66.0
Nn1g01650 Nelumbo nucifera HOM05D006032 ORTHO05D007544 1.9e-86 323.2 262 65.6
TWI59G0434 Tripterygium wilfordii HOM05D006032 ORTHO05D007544 3.2e-86 322.4 263 65.4
DCAR_006944 Daucus carota HOM05D006032 ORTHO05D007544 5.5e-86 321.6 264 64.8
Nitab4.5_0002682g0080 Nicotiana tabacum HOM05D006032 ORTHO05D007544 7.2e-86 321.2 261 65.9
QL04p055082 Quercus lobata HOM05D006032 ORTHO05D007544 9.4e-86 320.9 265 65.3
PGSC0003DMG400001748 Solanum tuberosum HOM05D006032 ORTHO05D007544 1.2e-85 320.5 261 65.5
THA.LOC104817034 Tarenaya hassleriana HOM05D006032 ORTHO05D007544 1.2e-85 320.5 271 63.8
Gohir.D07G146100 Gossypium hirsutum HOM05D006032 ORTHO05D007544 2.1e-85 319.7 263 62.7
Gorai.001G158300 Gossypium raimondii HOM05D006032 ORTHO05D007544 2.1e-85 319.7 263 62.7
CiPaw.01G065600 Carya illinoinensis HOM05D006032 ORTHO05D007544 4.7e-85 318.5 264 64.8
Gohir.A07G140700 Gossypium hirsutum HOM05D006032 ORTHO05D007544 6.1e-85 318.2 269 61.3
arahy.Tifrunner.gnm1.ann1.XQ5AKE Arachis hypogaea HOM05D006032 ORTHO05D007544 1.4e-84 317.0 270 62.6
Nitab4.5_0006802g0050 Nicotiana tabacum HOM05D006032 ORTHO05D007544 1.4e-84 317.0 261 64.4
Sopen09g002430 Solanum pennellii HOM05D006032 ORTHO05D007544 1.4e-84 317.0 265 64.9
arahy.Tifrunner.gnm1.ann1.S0M071 Arachis hypogaea HOM05D006032 ORTHO05D007544 1.8e-84 316.6 268 62.3
Glyma.18G237400 Glycine max HOM05D006032 ORTHO05D007544 1.8e-84 316.6 263 64.3
MSTRG.20857 Avicennia marina HOM05D006032 ORTHO05D007544 4.0e-84 315.5 262 63.7
CSS0027447 Camellia sinensis var. sinensis HOM05D006032 ORTHO05D007544 4.0e-84 315.5 261 63.6
HanXRQChr06g0170291 Helianthus annuus HOM05D006032 ORTHO05D007544 5.2e-84 315.1 263 62.4
Carub.0006s3637 Capsella rubella HOM05D006032 ORTHO05D007544 2.0e-83 313.2 266 61.7
ClCG05G001320 Citrullus lanatus HOM05D006032 ORTHO05D007544 2.0e-83 313.2 270 64.1
Sp6g00830 Schrenkiella parvula HOM05D006032 ORTHO05D007544 2.6e-83 312.8 267 61.4
CARHR249010 Cardamine hirsuta HOM05D006032 ORTHO05D007544 3.3e-83 312.4 269 61.0
CsaV3_3G008690 Cucumis sativus L. HOM05D006032 ORTHO05D007544 3.3e-83 312.4 272 62.9
Prupe.2G175800 Prunus persica HOM05D006032 ORTHO05D007544 7.5e-83 311.2 263 65.0
Thhalv10028885m.g Eutrema salsugineum HOM05D006032 ORTHO05D007544 9.7e-83 310.8 267 61.4
MD01G1069800 Malus domestica HOM05D006032 ORTHO05D007544 9.7e-83 310.8 263 63.9
CAN.G1091.3 Capsicum annuum HOM05D006032 ORTHO05D007544 1.3e-82 310.5 264 64.4
MELO3C006088.2 Cucumis melo HOM05D006032 ORTHO05D007544 1.3e-82 310.5 272 62.1
Lalb_Chr19g0126911 Lupinus albus HOM05D006032 ORTHO05D007544 2.2e-82 309.7 258 63.2
Lj7A509T108 Lonicera japonica HOM05D006032 ORTHO05D007544 2.8e-82 309.3 269 61.3
SalBow3G2277 Salvia bowleyana HOM05D006032 ORTHO05D007544 3.7e-82 308.9 262 62.6
AL6G52090 Arabidopsis lyrata HOM05D006032 ORTHO05D007544 4.8e-82 308.5 266 61.3
C03p38990 Brassica napus HOM05D006032 ORTHO05D007544 4.8e-82 308.5 266 62.4
AT4G01310 Arabidopsis thaliana HOM05D006032 ORTHO05D007544 1.1e-81 307.4 260 61.9
BcaB01g02152 Brassica carinata HOM05D006032 ORTHO05D007544 1.4e-81 307.0 266 62.4
BcaC01g06855 Brassica carinata HOM05D006032 ORTHO05D007544 1.4e-81 307.0 266 62.0
BolC3t16171H Brassica oleracea HOM05D006032 ORTHO05D007544 1.4e-81 307.0 266 62.0
Lsat_1_v5_gn_7_3801 Lactuca sativa HOM05D006032 ORTHO05D007544 1.8e-81 306.6 264 61.7
ECA236G4677 Erigeron canadensis HOM05D006032 ORTHO05D007544 2.4e-81 306.2 262 61.8
Oeu054338.1 Olea europaea HOM05D006032 ORTHO05D007544 2.4e-81 306.2 259 61.8
Glyma.09G255500 Glycine max HOM05D006032 ORTHO05D007544 3.1e-81 305.8 263 62.4
VMungo1383G0296 Vigna mungo HOM05D006032 ORTHO05D007544 9.1e-81 304.3 265 63.0
BcaB01g02282 Brassica carinata HOM05D006032 ORTHO05D007544 1.6e-80 303.5 266 61.7
MD07G1132700 Malus domestica HOM05D006032 ORTHO05D007544 2.0e-80 303.1 263 62.7
BcaC04g24141 Brassica carinata HOM05D006032 ORTHO05D007544 2.7e-80 302.8 266 61.7
Migut.B01790 Erythranthe guttata HOM05D006032 ORTHO05D007544 1.0e-79 300.8 261 60.5
Phvul.008G059200 Phaseolus vulgaris HOM05D006032 ORTHO05D007544 1.0e-79 300.8 264 62.1
Sed0022476 Sechium edule HOM05D006032 ORTHO05D007544 1.0e-79 300.8 270 61.1
Rhsim12G0138500 Rhododendron simsii HOM05D006032 ORTHO05D007544 5.0e-79 298.5 263 60.1
FAN06G2046 Fragaria x ananassa HOM05D006032 ORTHO05D007544 1.9e-78 296.6 259 61.4
FAN06G3864 Fragaria x ananassa HOM05D006032 ORTHO05D007544 1.9e-78 296.6 259 61.4
SGA_v2.0_scaffold95G28814 Striga asiatica HOM05D006032 ORTHO05D007544 1.9e-78 296.6 271 59.8
RcHm_v2.0_Chr1g0357301 Rosa chinensis HOM05D006032 ORTHO05D007544 2.5e-78 296.2 259 61.4
FAN03G1341 Fragaria x ananassa HOM05D006032 ORTHO05D007544 3.2e-78 295.8 261 60.5
FvH4_7g15110 Fragaria vesca HOM05D006032 ORTHO05D007544 4.2e-78 295.4 259 61.0
Ca_00819_v3 Cicer arietinum L. HOM05D006032 ORTHO05D007544 5.5e-78 295.0 264 62.1
Lj4g0026145 Lotus japonicus HOM05D006032 ORTHO05D007544 7.2e-78 294.7 263 60.8
PSO782G5129 Papaver somniferum HOM05D006032 ORTHO05D007544 1.2e-77 293.9 266 60.5
Aqoxy7G00233 Aquilegia oxysepala HOM05D006032 ORTHO05D007544 1.6e-77 293.5 264 59.8
BolC9t53001H Brassica oleracea HOM05D003611 ORTHO05D004281 2.7e-77 292.7 251 62.9
FAN10G0977 Fragaria x ananassa HOM05D006032 ORTHO05D007544 2.7e-77 292.7 259 60.6
FAN10G2244 Fragaria x ananassa HOM05D006032 ORTHO05D007544 2.7e-77 292.7 259 60.6
Aa31LG5G740 Aethionema arabicum HOM05D003611 ORTHO05D007544 3.6e-77 292.4 242 62.8
A09p00050 Brassica napus HOM05D003611 ORTHO05D004281 4.7e-77 292.0 247 62.8
BraA09t35736Z Brassica rapa HOM05D003611 ORTHO05D004281 4.7e-77 292.0 247 62.8
TAR629G0912 Trochodendron aralioides HOM05D006032 ORTHO05D007544 4.7e-77 292.0 260 60.0
C09p00670 Brassica napus HOM05D003611 ORTHO05D004281 8.0e-77 291.2 251 62.5
Sc01g0003280 Simmondsia chinensis HOM05D006032 ORTHO05D007544 1.0e-76 290.8 261 59.4
PSO478G3538 Papaver somniferum HOM05D006032 ORTHO05D007544 1.4e-76 290.4 269 59.9
Psat3g107160 Pisum sativum HOM05D006032 ORTHO05D007544 1.8e-76 290.0 267 60.3
Medtr7g078800 Medicago truncatula HOM05D006032 ORTHO05D007544 1.5e-75 287.0 263 60.5
TPR.G22296 Trifolium pratense HOM05D006032 ORTHO05D007544 1.5e-75 287.0 267 59.6
ATR0661G584 Amborella trichopoda HOM05D006032 ORTHO05D007544 2.6e-75 286.2 251 61.0
AUR62004402 Chenopodium quinoa HOM05D006032 ORTHO05D007544 2.2e-74 283.1 260 60.4
CDE04G3178 Ceratophyllum demersum HOM05D006032 ORTHO05D007544 3.7e-74 282.3 259 57.9
AUR62022608 Chenopodium quinoa HOM05D006032 ORTHO05D007544 1.4e-73 280.4 260 59.6
CDE12G0723 Ceratophyllum demersum HOM05D006032 ORTHO05D007544 1.8e-73 280.0 253 58.9
unitig_22.g5344 Utricularia gibba HOM05D003213 ORTHO05D003693 7.0e-73 278.1 240 60.4
HPP92_025634 Vanilla planifolia HOM05D006032 ORTHO05D007544 1.2e-72 277.3 261 57.5
Hund27251 Selenicereus undatus HOM05D006032 ORTHO05D007544 8.6e-71 271.2 238 61.3
EL10Ac1g00366 Beta vulgaris HOM05D006032 ORTHO05D007544 1.5e-70 270.4 307 52.4
Peaxi162Scf00815g00338 Petunia axillaris HOM05D006032 ORTHO05D007544 1.3e-66 257.3 183 71.0
Ah.05g180230 Amaranthus hybridus HOM05D003611 ORTHO05D007544 1.6e-64 250.4 260 56.5
vmacro20901 Vaccinium macrocarpon HOM05D006032 ORTHO05D007544 1.9e-62 243.4 267 52.8
Os03g0125000 Oryza sativa ssp. japonica HOM05D006032 ORTHO05D007544 2.1e-61 240.0 214 57.0
Zm00001eb001840 Zea mays HOM05D006032 ORTHO05D007544 8.9e-60 234.6 217 57.1
Dinv32511 Davidia involucrata HOM05D006032 ORTHO05D007544 1.5e-59 233.8 229 57.2
Mapoly0001s0334 Marchantia polymorpha HOM05D006032 ORTHO05D007544 1.7e-58 230.3 201 56.2
A03p31970 Brassica napus HOM05D006032 ORTHO05D007544 2.2e-58 229.9 197 60.9
BraA03t12369Z Brassica rapa HOM05D006032 ORTHO05D007544 2.2e-58 229.9 197 60.9
FAN01G2970 Fragaria x ananassa HOM05D006032 ORTHO05D007544 5.4e-57 225.3 195 60.5
SMO358G0099 Selaginella moellendorffii HOM05D006032 ORTHO05D007544 7.0e-57 224.9 175 61.7
AagrBONN_evm.TU.Sc2ySwM_228.1445 Anthoceros agrestis HOM05D006032 ORTHO05D007544 1.5e-54 217.2 190 53.7
MBI04_g41504_MAGBIO Magnolia biondii HOM05D006032 ORTHO05D007544 3.6e-53 212.6 231 50.6
Pp3c1_25850 Physcomitrium patens HOM05D006032 ORTHO05D007544 2.3e-52 209.9 261 44.4
Pp3c2_17110 Physcomitrium patens HOM05D006032 ORTHO05D007544 8.9e-52 208.0 211 47.4
Solyc09g007560.4 Solanum lycopersicum HOM05D006032 ORTHO05D007544 5.8e-51 205.3 175 64.0
Sabra14G0064700 Salix brachista HOM05D006032 ORTHO05D007544 8.1e-45 184.9 115 84.3
MSTRG.17292 Avicennia marina HOM05D006032 ORTHO05D007544 1.2e-43 181.0 129 70.5
SEGI_08351 Sequoiadendron giganteum HOM05D006032 ORTHO05D007544 2.2e-42 176.8 141 58.9
Haze_27649 Corylus avellana HOM05D006032 ORTHO05D007544 9.5e-38 161.4 151 50.3
Cfa021143 Carpinus fangiana HOM05D006032 ORTHO05D001488 8.4e-34 148.3 155 45.2
Rhsim01G0165400 Rhododendron simsii HOM05D006032 ORTHO05D007544 1.9e-33 147.1 155 52.3
COL.COLO4_27391 Corchorus olitorius HOM05D006032 ORTHO05D007544 3.5e-32 142.9 113 68.1
C02p38190 Brassica napus HOM05D006032 ORTHO05D007544 3.0e-31 139.8 265 39.6
BolC2t09834H Brassica oleracea HOM05D006032 ORTHO05D007544 3.0e-31 139.8 265 39.6
BcaC03g16053 Brassica carinata HOM05D006032 ORTHO05D007544 5.1e-31 139.0 265 39.6
SMO196G0051 Selaginella moellendorffii HOM05D006032 ORTHO05D007544 4.9e-26 122.5 173 37.6
Actinidia02824 Actinidia chinensis HOM05D006032 ORTHO05D007544 4.3e-22 109.4 89 60.7
Nitab4.5_0000681g0050 Nicotiana tabacum HOM05D006032 ORTHO05D007544 3.1e-20 103.2 76 67.1
Nitab4.5_0000681g0060 Nicotiana tabacum HOM05D006032 ORTHO05D007544 1.1e-17 94.7 75 66.7
VMungo1309G2152 Vigna mungo HOM05D006032 ORTHO05D007544 4.0e-12 76.3 69 55.1
Cfa024600 Carpinus fangiana HOM05D006032 ORTHO05D122942 9.0e-12 75.1 156 29.5
Rhsim12G0138600 Rhododendron simsii HOM05D006032 ORTHO05D007544 1.5e-11 74.3 83 54.2
VMungo0647G0507 Vigna mungo HOM05D006032 ORTHO05D007227 1.1e-09 68.2 58 56.9
Psat2g092280 Pisum sativum HOM05D006032 ORTHO05D007544 9.3e-09 65.1 60 55.0
Dinv43855 Davidia involucrata HOM05D006032 ORTHO05D007544 2.7e-08 63.5 39 69.2
unitig_8.g3788 Utricularia gibba HOM05D006032 ORTHO05D007544 1.1e-06 58.2 102 36.3


User provided reference genes

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