Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.014G087300 Populus trichocarpa HOM05D004502 ORTHO05D005579 0.0e+00 1675.2 831 100.0
Sabra14G0063300 Salix brachista HOM05D004502 ORTHO05D005579 0.0e+00 1426.0 806 88.5
Manes.01G254800 Manihot esculenta HOM05D004502 ORTHO05D005579 0.0e+00 1184.5 744 77.6
Haze_15535 Corylus avellana HOM05D004502 ORTHO05D005579 0.0e+00 1158.3 817 70.1
CiPaw.01G063800 Carya illinoinensis HOM05D004502 ORTHO05D005579 0.0e+00 1152.9 835 68.7
TWI23G1305 Tripterygium wilfordii HOM05D004502 ORTHO05D005579 0.0e+00 1140.9 827 69.0
Cfa003897 Carpinus fangiana HOM05D004502 ORTHO05D005579 0.0e+00 1134.0 808 69.7
Ciclev10018851m.g Citrus clementina HOM05D004502 ORTHO05D005579 0.0e+00 1119.4 813 68.5
QL04p054124 Quercus lobata HOM05D004502 ORTHO05D005579 0.0e+00 1119.0 835 66.8
GSVIVG01027000001 Vitis vinifera HOM05D004502 ORTHO05D005579 0.0e+00 1115.5 812 67.5
Cpa.g.sc11.33 Carica papaya HOM05D004502 ORTHO05D005579 0.0e+00 1106.7 834 67.1
Atru.chr5.526 Acer truncatum HOM05D004502 ORTHO05D005579 0.0e+00 1075.8 844 64.2
PGR042G2088 Punica granatum HOM05D004502 ORTHO05D005579 7.3e-310 1067.0 830 65.9
Duzib133G0971 Durio zibethinus HOM05D004502 ORTHO05D005579 9.6e-310 1066.6 827 66.4
Dinv32500 Davidia involucrata HOM05D004502 ORTHO05D005579 1.6e-309 1065.8 875 62.4
Hma1.2p1_0071F.1_g037745 Hydrangea macrophylla HOM05D004502 ORTHO05D005579 2.4e-308 1062.0 837 63.7
MD07G1133800 Malus domestica HOM05D004502 ORTHO05D005579 5.3e-308 1060.8 837 63.2
Gorai.004G159100 Gossypium raimondii HOM05D004502 ORTHO05D005579 1.2e-307 1059.7 829 66.0
Thecc.01G356300 Theobroma cacao HOM05D004502 ORTHO05D005579 9.9e-307 1056.6 773 68.7
Eucgr.E00113 Eucalyptus grandis HOM05D004502 ORTHO05D005579 1.9e-305 1052.4 802 66.5
Gorai.007G101400 Gossypium raimondii HOM05D004502 ORTHO05D005579 9.3e-305 1050.0 828 65.8
Gohir.D11G095000 Gossypium hirsutum HOM05D004502 ORTHO05D005579 1.2e-304 1049.7 828 65.6
CANSAT56G0477 Cannabis sativa HOM05D004502 ORTHO05D005579 1.6e-304 1049.3 789 64.9
RcHm_v2.0_Chr1g0356801 Rosa chinensis HOM05D004502 ORTHO05D005579 4.3e-302 1041.2 848 62.1
Duzib138G1080 Durio zibethinus HOM05D004502 ORTHO05D005579 8.1e-301 1036.9 784 68.2
Actinidia14191 Actinidia chinensis HOM05D004502 ORTHO05D005579 1.3e-298 1029.6 844 60.8
Actinidia20888 Actinidia chinensis HOM05D004502 ORTHO05D005579 8.4e-298 1026.9 824 63.0
TAR629G1389 Trochodendron aralioides HOM05D004502 ORTHO05D005579 1.9e-297 1025.8 829 62.2
Nn1g01586 Nelumbo nucifera HOM05D004502 ORTHO05D005579 7.1e-297 1023.8 816 62.3
Glyma.09G257000 Glycine max HOM05D004502 ORTHO05D005579 3.0e-295 1018.5 831 62.3
Glyma.18G235400 Glycine max HOM05D004502 ORTHO05D005579 3.0e-295 1018.5 831 61.5
Glyma.07G068700 Glycine max HOM05D004502 ORTHO05D005579 5.6e-294 1014.2 841 61.1
arahy.Tifrunner.gnm1.ann1.0GN1Z3 Arachis hypogaea HOM05D004502 ORTHO05D005579 1.8e-292 1009.2 836 60.6
FvH4_7g14850 Fragaria vesca HOM05D004502 ORTHO05D005579 6.9e-292 1007.3 848 60.8
Medtr8g028875 Medicago truncatula HOM05D004502 ORTHO05D005579 9.0e-292 1006.9 785 62.2
Lj3g0021790 Lotus japonicus HOM05D004502 ORTHO05D005579 1.5e-291 1006.1 804 62.1
Hund16660 Selenicereus undatus HOM05D004502 ORTHO05D005579 2.0e-291 1005.7 811 61.4
VMungo1383G3442 Vigna mungo HOM05D004502 ORTHO05D005579 1.3e-290 1003.0 835 61.7
arahy.Tifrunner.gnm1.ann1.V8X9PU Arachis hypogaea HOM05D004502 ORTHO05D005579 3.8e-290 1001.5 839 60.1
Gohir.A11G090500 Gossypium hirsutum HOM05D004502 ORTHO05D005579 3.5e-288 995.0 828 63.0
VMungo0331G1775 Vigna mungo HOM05D004502 ORTHO05D005579 6.0e-288 994.2 835 60.6
TPR.G37813 Trifolium pratense HOM05D004502 ORTHO05D005579 1.3e-287 993.0 802 60.6
Rhsim07G0013000 Rhododendron simsii HOM05D004502 ORTHO05D005579 5.1e-287 991.1 842 60.9
Phvul.010G100800 Phaseolus vulgaris HOM05D004502 ORTHO05D005579 1.9e-286 989.2 830 61.2
Psat3g107400 Pisum sativum HOM05D004502 ORTHO05D005579 2.5e-286 988.8 814 60.9
CSS0020518 Camellia sinensis var. sinensis HOM05D004502 ORTHO05D005579 2.4e-284 982.2 769 63.3
FAN10G2351 Fragaria x ananassa HOM05D004502 ORTHO05D005579 9.0e-284 980.3 846 59.3
FAN01G2073 Fragaria x ananassa HOM05D004502 ORTHO05D005579 3.2e-281 971.8 831 59.6
Lalb_Chr17g0339421 Lupinus albus HOM05D004502 ORTHO05D005579 3.2e-281 971.8 829 59.2
Cc02_g38300 Coffea canephora HOM05D004502 ORTHO05D005579 4.2e-281 971.5 792 61.5
Lj9C585G14 Lonicera japonica HOM05D004502 ORTHO05D005579 1.6e-280 969.5 826 60.2
CsaV3_6G000710 Cucumis sativus L. HOM05D004502 ORTHO05D005579 3.5e-280 968.4 841 57.7
Oeu052960.2 Olea europaea HOM05D004502 ORTHO05D005579 5.7e-278 961.1 828 59.2
Sed0014632 Sechium edule HOM05D004502 ORTHO05D005579 1.8e-276 956.1 823 58.3
FAN06G1095 Fragaria x ananassa HOM05D004502 ORTHO05D005579 2.4e-276 955.7 889 56.7
Peaxi162Scf00020g01028 Petunia axillaris HOM05D004502 ORTHO05D005579 2.0e-275 952.6 823 59.3
Nn6g33342 Nelumbo nucifera HOM05D004502 ORTHO05D005579 3.4e-275 951.8 772 62.3
Sed0001889 Sechium edule HOM05D004502 ORTHO05D005579 3.4e-275 951.8 845 57.3
arahy.Tifrunner.gnm1.ann1.C1BLFK Arachis hypogaea HOM05D004502 ORTHO05D005579 5.9e-275 951.0 841 58.0
Prupe.2G173600 Prunus persica HOM05D004502 ORTHO05D005579 3.8e-274 948.3 722 66.5
Aa31LG1G27460 Aethionema arabicum HOM05D004502 ORTHO05D005579 8.5e-274 947.2 793 61.4
FAN06G0667 Fragaria x ananassa HOM05D004502 ORTHO05D005579 1.2e-272 943.3 848 58.1
TPR.G17909 Trifolium pratense HOM05D004502 ORTHO05D005579 2.7e-272 942.2 841 57.0
COL.COLO4_12736 Corchorus olitorius HOM05D004502 ORTHO05D005579 6.1e-272 941.0 679 69.7
Migut.B01778 Erythranthe guttata HOM05D004502 ORTHO05D005579 1.0e-271 940.3 812 58.0
CARHR141310 Cardamine hirsuta HOM05D004502 ORTHO05D005579 1.8e-271 939.5 794 60.8
HanXRQChr17g0562371 Helianthus annuus HOM05D004502 ORTHO05D005579 2.0e-270 936.0 827 58.0
Sc01g0003530 Simmondsia chinensis HOM05D004502 ORTHO05D005579 7.4e-270 934.1 759 61.0
Phvul.008G060500 Phaseolus vulgaris HOM05D004502 ORTHO05D005579 2.2e-269 932.6 744 62.2
Sopen01g038640 Solanum pennellii HOM05D004502 ORTHO05D005579 1.4e-268 929.9 793 59.3
Solyc01g094860.4 Solanum lycopersicum HOM05D004502 ORTHO05D005579 1.8e-268 929.5 793 58.6
ClCG06G003550 Citrullus lanatus HOM05D004502 ORTHO05D005579 4.5e-267 924.9 843 56.7
Thhalv10001314m.g Eutrema salsugineum HOM05D004502 ORTHO05D005579 4.5e-267 924.9 796 60.3
MSTRG.17285 Avicennia marina HOM05D004502 ORTHO05D005579 5.9e-267 924.5 825 56.7
CAN.G78.100 Capsicum annuum HOM05D004502 ORTHO05D005579 1.3e-266 923.3 801 58.1
SalBow3G3684 Salvia bowleyana HOM05D004502 ORTHO05D005579 1.7e-266 922.9 818 56.1
vmacro13259 Vaccinium macrocarpon HOM05D004502 ORTHO05D005579 3.8e-266 921.8 771 59.9
FAN10G2492 Fragaria x ananassa HOM05D004502 ORTHO05D005579 6.5e-266 921.0 846 56.7
AL4G45280 Arabidopsis lyrata HOM05D004502 ORTHO05D005579 1.1e-265 920.2 830 59.3
THA.LOC104802040 Tarenaya hassleriana HOM05D004502 ORTHO05D005579 2.5e-265 919.1 830 57.8
AT2G46060 Arabidopsis thaliana HOM05D004502 ORTHO05D005579 5.5e-265 917.9 826 58.4
AUR62004387 Chenopodium quinoa HOM05D004502 ORTHO05D005579 9.4e-265 917.1 773 59.1
Carub.0004s2875 Capsella rubella HOM05D004502 ORTHO05D005579 3.6e-264 915.2 827 58.2
Lsat_1_v5_gn_4_34660 Lactuca sativa HOM05D004502 ORTHO05D005579 3.6e-264 915.2 810 57.3
ECA234G4483 Erigeron canadensis HOM05D004502 ORTHO05D005579 1.1e-262 910.2 801 58.4
Sp4g28120 Schrenkiella parvula HOM05D004502 ORTHO05D005579 7.4e-262 907.5 796 59.8
arahy.Tifrunner.gnm1.ann1.04AGHE Arachis hypogaea HOM05D004502 ORTHO05D005579 2.4e-260 902.5 841 55.9
HanXRQChr06g0170231 Helianthus annuus HOM05D004502 ORTHO05D005579 6.5e-258 894.4 843 55.8
PGSC0003DMG400000181 Solanum tuberosum HOM05D004502 ORTHO05D005579 8.5e-258 894.0 791 57.6
Gohir.D08G153200 Gossypium hirsutum HOM05D004502 ORTHO05D005579 1.2e-256 890.2 691 65.8
Ca_23605_v3 Cicer arietinum L. HOM05D004502 ORTHO05D005579 2.1e-256 889.4 731 60.9
Aqoxy7G00260 Aquilegia oxysepala HOM05D004502 ORTHO05D005579 1.8e-255 886.3 842 55.5
SGA_v2.0_scaffold95G28821 Striga asiatica HOM05D004502 ORTHO05D005579 1.8e-255 886.3 816 56.5
Ca_00829_v3 Cicer arietinum L. HOM05D004502 ORTHO05D005579 8.8e-255 884.0 722 60.4
A05p06020 Brassica napus HOM05D004502 ORTHO05D005579 3.7e-253 878.6 829 56.2
C04p06950 Brassica napus HOM05D004502 ORTHO05D005579 1.8e-252 876.3 827 56.1
BolC4t22316H Brassica oleracea HOM05D004502 ORTHO05D005579 1.8e-252 876.3 827 56.1
BraA05t19565Z Brassica rapa HOM05D004502 ORTHO05D005579 4.1e-252 875.2 798 56.9
Rhsim01G0146800 Rhododendron simsii HOM05D004502 ORTHO05D005579 1.0e-250 870.5 848 54.7
BraA04t18886Z Brassica rapa HOM05D004502 ORTHO05D005579 1.9e-249 866.3 842 54.9
ECA236G0795 Erigeron canadensis HOM05D004502 ORTHO05D005579 2.7e-248 862.4 784 57.4
PSO478G3176 Papaver somniferum HOM05D004502 ORTHO05D005579 1.2e-246 857.1 818 54.2
A04p34250 Brassica napus HOM05D004502 ORTHO05D005579 2.6e-246 855.9 870 53.1
C04p72070 Brassica napus HOM05D004502 ORTHO05D005579 1.3e-242 843.6 871 52.8
PSO782G3525 Papaver somniferum HOM05D004502 ORTHO05D005579 2.5e-241 839.3 813 53.6
Nitab4.5_0010258g0020 Nicotiana tabacum HOM05D004502 ORTHO05D005579 7.2e-241 837.8 763 57.3
Psat4g212960 Pisum sativum HOM05D004502 ORTHO05D005579 7.8e-227 791.2 704 56.1
vmacro20915 Vaccinium macrocarpon HOM05D004502 ORTHO05D005579 2.9e-221 772.7 659 59.2
AUR62022593 Chenopodium quinoa HOM05D004502 ORTHO05D005579 1.9e-220 770.0 670 57.5
Os10g0446200 Oryza sativa ssp. japonica HOM05D004502 ORTHO05D005579 9.2e-220 767.7 832 48.3
ATR0680G297 Amborella trichopoda HOM05D004502 ORTHO05D005579 1.4e-215 753.8 852 48.1
HPP92_022633 Vanilla planifolia HOM05D004502 ORTHO05D005579 1.8e-215 753.4 847 47.0
EL10Ac1g00390 Beta vulgaris HOM05D004502 ORTHO05D005579 1.1e-212 744.2 858 47.6
Nitab4.5_0000583g0350 Nicotiana tabacum HOM05D004502 ORTHO05D005579 1.1e-212 744.2 806 50.0
MD01G1067200 Malus domestica HOM05D004502 ORTHO05D005579 2.1e-208 729.9 612 59.6
MBI18_g32047_MAGBIO Magnolia biondii HOM05D004502 ORTHO05D005579 1.7e-205 720.3 940 44.5
SHI13432 Sapria himalayana HOM05D004502 ORTHO05D005579 4.1e-204 715.7 710 52.3
QL12p032431 Quercus lobata HOM05D004502 ORTHO05D005579 1.3e-202 710.7 815 46.0
TWI60G0172 Tripterygium wilfordii HOM05D004502 ORTHO05D005579 1.6e-195 687.2 811 47.7
MELO3C021198.2 Cucumis melo HOM05D004502 ORTHO05D005579 2.4e-191 673.3 516 62.6
Zm00001eb222430 Zea mays HOM05D004502 ORTHO05D005579 1.7e-181 640.6 696 48.7
COL.COLO4_34496 Corchorus olitorius HOM05D004502 ORTHO05D005579 6.7e-178 628.6 796 43.7
Aqoxy7G00261 Aquilegia oxysepala HOM05D004502 ORTHO05D005579 8.2e-168 595.1 719 47.1
FAN03G0719 Fragaria x ananassa HOM05D004502 ORTHO05D005579 1.0e-162 578.2 717 46.0
TAR375G0606 Trochodendron aralioides HOM05D004502 ORTHO05D005579 1.2e-155 554.7 446 61.4
DCAR_008618 Daucus carota HOM05D004502 ORTHO05D005579 1.9e-148 530.8 386 66.6
Gohir.A08G131800 Gossypium hirsutum HOM05D004502 ORTHO05D005579 1.7e-144 517.7 343 77.3
Ah.05g180370 Amaranthus hybridus HOM05D004502 ORTHO05D005579 3.7e-144 516.5 528 49.2
Glyma.16G034551 Glycine max HOM05D004502 ORTHO05D005579 3.8e-133 479.9 339 70.8
AUR62010714 Chenopodium quinoa HOM05D004502 ORTHO05D005579 7.2e-132 475.7 717 38.4
Gohir.A08G131900 Gossypium hirsutum HOM05D004502 ORTHO05D005579 3.6e-131 473.4 437 57.4
Haze_08811 Corylus avellana HOM05D004502 ORTHO05D005579 5.0e-109 399.8 493 43.4
unitig_26.g9298 Utricularia gibba HOM05D004502 ORTHO05D005579 3.2e-103 380.6 320 59.1
Glyma.16G034476 Glycine max HOM05D004502 ORTHO05D005579 1.7e-101 374.8 384 50.5
Pp3c10_11170 Physcomitrium patens HOM05D004502 ORTHO05D005579 2.2e-96 357.8 880 29.4
Mapoly0035s0107 Marchantia polymorpha HOM05D004502 ORTHO05D005579 4.1e-95 353.6 773 30.9
unitig_26.g9297 Utricularia gibba HOM05D004502 ORTHO05D005579 1.7e-88 331.6 406 43.8
CDE06G0820 Ceratophyllum demersum HOM05D004502 ORTHO05D005579 3.8e-88 330.5 356 46.9
Hund14837 Selenicereus undatus HOM05D004502 ORTHO05D005579 7.8e-86 322.8 460 39.3
MELO3C021197.2 Cucumis melo HOM05D004502 ORTHO05D005579 7.3e-76 289.7 289 52.9
Cc08_g14990 Coffea canephora HOM05D004502 ORTHO05D005579 2.1e-75 288.1 307 50.2
SEGI_07374 Sequoiadendron giganteum HOM05D004502 ORTHO05D005579 8.7e-69 266.2 375 38.7
vmacro20916 Vaccinium macrocarpon HOM05D004502 ORTHO05D005579 5.8e-57 226.9 177 67.8
COL.COLO4_28934 Corchorus olitorius HOM05D004502 ORTHO05D005579 2.9e-56 224.6 199 56.8
MD01G1067000 Malus domestica HOM05D004502 ORTHO05D005579 2.3e-53 214.9 181 60.8
CBR_g17145 Chara braunii HOM05D004502 ORTHO05D005579 3.4e-41 174.5 861 22.2
MELO3C031211.2 Cucumis melo HOM05D004502 ORTHO05D005579 1.8e-29 135.6 135 49.6
Hund14845 Selenicereus undatus HOM05D004502 ORTHO05D005579 1.0e-21 109.8 112 51.8
CDE06G0272 Ceratophyllum demersum HOM05D004502 ORTHO05D005579 9.7e-20 103.2 103 59.2
TPR.G24958 Trifolium pratense HOM05D004502 ORTHO05D005579 4.8e-19 100.9 115 46.1
Hund14838 Selenicereus undatus HOM05D004502 ORTHO05D005579 9.4e-15 86.7 112 41.1
SEGI_31877 Sequoiadendron giganteum HOM05D004502 ORTHO05D005579 9.8e-12 76.6 63 46.0
MELO3C034807.2 Cucumis melo HOM05D004502 ORTHO05D011879 6.3e-11 73.9 88 45.5
arahy.Tifrunner.gnm1.ann1.YV6W0W Arachis hypogaea HOM05D000064 ORTHO05D001480 9.1e-10 70.1 58 58.6
arahy.Tifrunner.gnm1.ann1.R57FTB Arachis hypogaea HOM05D004502 ORTHO05D002623 1.6e-09 69.3 35 85.7
arahy.Tifrunner.gnm1.ann1.I8C0YZ Arachis hypogaea HOM05D000064 ORTHO05D001480 7.7e-09 67.0 50 60.0
Thecc.03G282200 Theobroma cacao HOM05D004502 ORTHO05D005579 5.0e-08 64.3 57 52.6
Hund14846 Selenicereus undatus HOM05D004502 ORTHO05D005579 6.6e-08 63.9 40 60.0
CBR_g17143 Chara braunii HOM05D004502 ORTHO05D005579 5.5e-07 60.8 131 30.5


User provided reference genes

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