Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.014G085900 Populus trichocarpa HOM05D001925 ORTHO05D005701 4.4e-308 1060.4 537 100.0
Sabra14G0062200 Salix brachista HOM05D001925 ORTHO05D005701 2.1e-289 998.4 537 94.0
Manes.05G033300 Manihot esculenta HOM05D001925 ORTHO05D005701 6.1e-233 810.8 538 75.8
CiPaw.01G062800 Carya illinoinensis HOM05D001925 ORTHO05D005701 1.0e-224 783.5 540 74.6
QL04p053597 Quercus lobata HOM05D001925 ORTHO05D005701 5.9e-220 767.7 539 73.5
Cfa003907 Carpinus fangiana HOM05D001925 ORTHO05D005701 1.0e-216 756.9 540 72.0
Haze_15511 Corylus avellana HOM05D001925 ORTHO05D005701 1.5e-215 753.1 540 71.7
Actinidia10039 Actinidia chinensis HOM05D001925 ORTHO05D005701 7.0e-213 744.2 542 70.1
Duzib138G1334 Durio zibethinus HOM05D001925 ORTHO05D005701 2.3e-211 739.2 537 69.8
Thecc.01G357800 Theobroma cacao HOM05D001925 ORTHO05D005701 3.0e-211 738.8 539 70.9
Lj6A572T62 Lonicera japonica HOM05D001925 ORTHO05D005701 3.9e-211 738.4 546 69.6
GSVIVG01008477001 Vitis vinifera HOM05D001925 ORTHO05D005701 5.0e-211 738.0 538 71.0
Lj6A578T43 Lonicera japonica HOM05D001925 ORTHO05D005701 1.5e-210 736.5 546 69.4
Atru.chr5.509 Acer truncatum HOM05D001925 ORTHO05D005701 2.5e-210 735.7 539 70.9
vmacro13268 Vaccinium macrocarpon HOM05D001925 ORTHO05D005701 5.6e-210 734.6 547 69.3
Gohir.A11G089700 Gossypium hirsutum HOM05D001925 ORTHO05D005701 2.8e-209 732.3 538 69.5
CSS0009302 Camellia sinensis var. sinensis HOM05D001925 ORTHO05D005701 6.2e-209 731.1 541 69.7
CSS0022743 Camellia sinensis var. sinensis HOM05D001925 ORTHO05D005701 6.2e-209 731.1 541 69.7
Rhsim07G0013900 Rhododendron simsii HOM05D001925 ORTHO05D005701 2.3e-208 729.2 542 68.6
COL.COLO4_12725 Corchorus olitorius HOM05D001925 ORTHO05D005701 5.2e-208 728.0 537 70.0
CANSAT56G3724 Cannabis sativa HOM05D001925 ORTHO05D005701 1.2e-207 726.9 544 71.3
Ciclev10019660m.g Citrus clementina HOM05D001925 ORTHO05D005701 2.0e-207 726.1 537 70.9
Gorai.007G100400 Gossypium raimondii HOM05D001925 ORTHO05D005701 5.8e-207 724.5 538 69.1
Gohir.D11G094000 Gossypium hirsutum HOM05D001925 ORTHO05D005701 3.7e-206 721.8 538 69.1
TAR636G2317 Trochodendron aralioides HOM05D001925 ORTHO05D005701 1.4e-205 719.9 540 70.0
Cpa.g.sc11.17 Carica papaya HOM05D001925 ORTHO05D005701 2.4e-205 719.2 540 68.5
Glyma.18G234000 Glycine max HOM05D001925 ORTHO05D005701 2.4e-205 719.2 540 67.2
Nn6g33390 Nelumbo nucifera HOM05D001925 ORTHO05D005701 7.1e-205 717.6 541 67.5
Medtr7g077840 Medicago truncatula HOM05D001925 ORTHO05D005701 3.5e-204 715.3 544 67.3
VMungo1383G1901 Vigna mungo HOM05D001925 ORTHO05D005701 1.7e-203 713.0 540 67.4
Lj1g0000866 Lotus japonicus HOM05D001925 ORTHO05D005701 1.5e-202 709.9 542 66.6
arahy.Tifrunner.gnm1.ann1.69YTHK Arachis hypogaea HOM05D001925 ORTHO05D005701 1.2e-201 706.8 538 67.3
TWI73G0882 Tripterygium wilfordii HOM05D001925 ORTHO05D005701 1.6e-201 706.4 533 68.7
MD01G1065000 Malus domestica HOM05D001925 ORTHO05D005701 2.8e-201 705.7 539 67.2
RcHm_v2.0_Chr1g0355901 Rosa chinensis HOM05D001925 ORTHO05D005701 3.6e-201 705.3 583 65.2
RcHm_v2.0_Chr2g0161261 Rosa chinensis HOM05D001925 ORTHO05D005701 6.2e-201 704.5 582 64.4
Phvul.008G061800 Phaseolus vulgaris HOM05D001925 ORTHO05D005701 8.1e-201 704.1 540 66.7
Ca_07928_v3 Cicer arietinum L. HOM05D001925 ORTHO05D005701 1.1e-200 703.7 541 65.8
ClCG06G003620 Citrullus lanatus HOM05D001925 ORTHO05D005701 6.8e-200 701.0 541 67.1
FvH4_7g14490 Fragaria vesca HOM05D001925 ORTHO05D005701 3.4e-199 698.7 584 64.4
Psat4g001160 Pisum sativum HOM05D001925 ORTHO05D005701 4.4e-199 698.4 545 65.7
Sed0000605 Sechium edule HOM05D001925 ORTHO05D005701 7.6e-199 697.6 539 67.0
THA.LOC104825846 Tarenaya hassleriana HOM05D001925 ORTHO05D005701 2.9e-198 695.7 538 66.4
DCAR_007446 Daucus carota HOM05D001925 ORTHO05D005701 1.2e-196 690.3 541 67.7
Eucgr.L01587 Eucalyptus grandis HOM05D001925 ORTHO05D005701 1.2e-196 690.3 545 66.8
Cc02_g38160 Coffea canephora HOM05D001925 ORTHO05D005701 1.6e-196 689.9 538 65.4
MELO3C021204.2 Cucumis melo HOM05D001925 ORTHO05D005701 2.7e-196 689.1 539 66.2
Prupe.2G172000 Prunus persica HOM05D001925 ORTHO05D005701 3.9e-195 685.3 540 66.7
PGR004G0833 Punica granatum HOM05D001925 ORTHO05D005701 4.7e-193 678.3 543 64.6
Migut.B01766 Erythranthe guttata HOM05D001925 ORTHO05D005701 6.2e-193 677.9 537 65.9
HanXRQChr04g0121151 Helianthus annuus HOM05D001925 ORTHO05D005701 3.1e-192 675.6 543 64.1
arahy.Tifrunner.gnm1.ann1.NC5V2N Arachis hypogaea HOM05D001925 ORTHO05D005701 8.9e-192 674.1 545 65.1
arahy.Tifrunner.gnm1.ann1.9GVB5D Arachis hypogaea HOM05D001925 ORTHO05D005701 3.4e-191 672.2 545 64.4
Lj7A511T78 Lonicera japonica HOM05D001925 ORTHO05D005701 4.4e-191 671.8 524 66.8
Peaxi162Scf00020g00723 Petunia axillaris HOM05D001925 ORTHO05D005701 2.2e-190 669.5 540 64.4
CAN.G78.90 Capsicum annuum HOM05D001925 ORTHO05D005701 7.8e-188 661.0 539 64.0
Eucgr.D01236 Eucalyptus grandis HOM05D001925 ORTHO05D005701 6.6e-187 657.9 540 65.0
Oeu015817.1 Olea europaea HOM05D001925 ORTHO05D005701 1.9e-186 656.4 543 63.9
Sopen01g038540 Solanum pennellii HOM05D001925 ORTHO05D005701 1.3e-185 653.7 539 64.0
SGA_v2.0_scaffold4G02302 Striga asiatica HOM05D001925 ORTHO05D005701 2.1e-185 652.9 546 64.5
Nitab4.5_0000583g0200 Nicotiana tabacum HOM05D001925 ORTHO05D005701 3.6e-185 652.1 540 63.7
Solyc01g094760.3 Solanum lycopersicum HOM05D001925 ORTHO05D005701 6.2e-185 651.4 539 63.8
PGSC0003DMG400000174 Solanum tuberosum HOM05D001925 ORTHO05D005701 1.8e-184 649.8 539 63.8
FAN03G1293 Fragaria x ananassa HOM05D001925 ORTHO05D005701 4.0e-184 648.7 584 61.3
FAN06G1763 Fragaria x ananassa HOM05D001925 ORTHO05D005701 5.3e-184 648.3 584 61.1
FAN10G1478 Fragaria x ananassa HOM05D001925 ORTHO05D005701 9.0e-184 647.5 585 61.4
SalBow3G0216 Salvia bowleyana HOM05D001925 ORTHO05D005701 9.0e-184 647.5 526 63.9
ECA236G3836 Erigeron canadensis HOM05D001925 ORTHO05D005701 1.2e-183 647.1 542 63.8
AT4G29910 Arabidopsis thaliana HOM05D001925 ORTHO05D005701 1.5e-183 646.7 539 62.5
BcaB02g07622 Brassica carinata HOM05D001925 ORTHO05D005701 2.6e-183 646.0 542 62.2
FAN06G3551 Fragaria x ananassa HOM05D001925 ORTHO05D005701 3.4e-183 645.6 584 61.0
FAN10G3665 Fragaria x ananassa HOM05D001925 ORTHO05D005701 4.4e-183 645.2 585 61.2
Sp5g05460 Schrenkiella parvula HOM05D001925 ORTHO05D005701 7.6e-183 644.4 542 62.9
AL7G22330 Arabidopsis lyrata HOM05D001925 ORTHO05D005701 1.7e-182 643.3 543 62.1
MBI04_g28752_MAGBIO Magnolia biondii HOM05D001925 ORTHO05D005701 4.9e-182 641.7 545 61.7
BraA07t29988Z Brassica rapa HOM05D001925 ORTHO05D005701 1.6e-180 636.7 541 61.6
Hund16654 Selenicereus undatus HOM05D001925 ORTHO05D005701 1.6e-180 636.7 531 64.0
A07p23240 Brassica napus HOM05D001925 ORTHO05D005701 2.7e-180 636.0 541 61.6
BcaC08g44822 Brassica carinata HOM05D001925 ORTHO05D005701 3.5e-180 635.6 542 61.3
Glyma.09G258700 Glycine max HOM05D001925 ORTHO05D005701 1.0e-179 634.0 541 61.6
TPR.G37845 Trifolium pratense HOM05D001925 ORTHO05D005701 1.3e-179 633.6 547 61.4
C06p24120 Brassica napus HOM05D001925 ORTHO05D005701 3.9e-179 632.1 542 61.1
BolC6t37570H Brassica oleracea HOM05D001925 ORTHO05D005701 2.5e-178 629.4 542 60.9
FAN01G0375 Fragaria x ananassa HOM05D001925 ORTHO05D005701 3.3e-178 629.0 586 59.9
Lsat_1_v5_gn_7_4881 Lactuca sativa HOM05D001925 ORTHO05D005701 1.4e-176 623.6 530 61.9
Lalb_Chr13g0304081 Lupinus albus HOM05D001925 ORTHO05D005701 1.8e-176 623.2 539 60.3
CARHR237820 Cardamine hirsuta HOM05D001925 ORTHO05D005701 4.0e-176 622.1 534 62.2
BcaB02g07621 Brassica carinata HOM05D001925 ORTHO05D005701 1.3e-174 617.1 542 60.3
Thhalv10005869m.g Eutrema salsugineum HOM05D001925 ORTHO05D005701 1.3e-174 617.1 546 60.1
Aqoxy2G04021 Aquilegia oxysepala HOM05D001925 ORTHO05D005701 5.5e-173 611.7 545 58.7
Nitab4.5_0006018g0050 Nicotiana tabacum HOM05D001925 ORTHO05D005701 1.2e-172 610.5 513 63.2
CDE08G0676 Ceratophyllum demersum HOM05D001925 ORTHO05D005701 2.3e-171 606.3 519 60.9
EL10Ac1g00402 Beta vulgaris HOM05D001925 ORTHO05D005701 3.0e-171 605.9 550 59.3
Aa31LG2G20640 Aethionema arabicum HOM05D001925 ORTHO05D005701 4.0e-168 595.5 542 59.0
ATR0068G004 Amborella trichopoda HOM05D001925 ORTHO05D005701 1.4e-165 587.0 507 58.4
Ah.05g180520 Amaranthus hybridus HOM05D001925 ORTHO05D001453 7.9e-164 581.3 533 58.2
Dinv43827 Davidia involucrata HOM05D001925 ORTHO05D005701 6.7e-163 578.2 413 70.9
PSO384G0118 Papaver somniferum HOM05D001925 ORTHO05D005701 5.7e-162 575.1 571 57.1
AUR62004371 Chenopodium quinoa HOM05D001925 ORTHO05D005701 1.1e-154 550.8 550 55.1
AUR62022580 Chenopodium quinoa HOM05D001925 ORTHO05D005701 7.4e-154 548.1 550 55.3
Potri.001G135975 Populus trichocarpa HOM05D001925 ORTHO05D005701 5.7e-146 521.9 263 98.9
CsaV3_6G000620 Cucumis sativus L. HOM05D001925 ORTHO05D005701 8.2e-145 518.1 421 63.7
Carub.0007s1073 Capsella rubella HOM05D001925 ORTHO05D005701 2.6e-143 513.1 412 66.0
Sc01g0003490 Simmondsia chinensis HOM05D001925 ORTHO05D005701 2.2e-137 493.4 425 61.2
Os03g0759500 Oryza sativa ssp. japonica HOM05D001925 ORTHO05D005701 8.2e-129 464.9 495 51.5
Zm00001eb214490 Zea mays HOM05D001925 ORTHO05D005701 3.5e-127 459.5 496 50.6
Carub.0002s1689 Capsella rubella HOM05D001925 ORTHO05D005701 1.6e-124 450.7 357 65.8
arahy.Tifrunner.gnm1.ann1.IR4EKV Arachis hypogaea HOM05D001925 ORTHO05D005701 2.0e-122 443.7 319 72.1
PSO339G3045 Papaver somniferum HOM05D001925 ORTHO05D005701 2.8e-121 439.9 495 51.9
SEGI_03119 Sequoiadendron giganteum HOM05D001925 ORTHO05D005701 1.7e-118 430.6 569 41.5
BcaC07g40027 Brassica carinata HOM05D001925 ORTHO05D005701 1.8e-115 420.6 464 50.2
arahy.Tifrunner.gnm1.ann1.SID920 Arachis hypogaea HOM05D001925 ORTHO05D005701 1.8e-112 410.6 424 54.7
Oeu050467.2 Olea europaea HOM05D001925 ORTHO05D005701 9.2e-112 408.3 543 46.2
HPP92_019868 Vanilla planifolia HOM05D001925 ORTHO05D005701 1.0e-107 394.8 353 58.4
ECA236G4017 Erigeron canadensis HOM05D001925 ORTHO05D005701 1.1e-96 358.2 316 62.3
arahy.Tifrunner.gnm1.ann1.D25PMP Arachis hypogaea HOM05D001925 ORTHO05D005701 1.6e-95 354.4 423 48.2
SMO147G0283 Selaginella moellendorffii HOM05D001925 ORTHO05D005701 3.5e-95 353.2 502 40.4
AagrBONN_evm.TU.Sc2ySwM_368.2511 Anthoceros agrestis HOM05D001925 ORTHO05D005701 6.6e-94 349.0 494 40.3
Pp3c17_13600 Physcomitrium patens HOM05D001925 ORTHO05D005701 5.4e-88 329.3 511 38.4
MD07G1135400 Malus domestica HOM05D001925 ORTHO05D005701 2.1e-87 327.4 347 55.3
Mapoly0177s0008 Marchantia polymorpha HOM05D001925 ORTHO05D005701 2.8e-84 317.0 485 37.9
C08p32440 Brassica napus HOM05D001925 ORTHO05D005701 1.6e-76 291.2 448 40.8
BolC8t50859H Brassica oleracea HOM05D001925 ORTHO05D005701 2.1e-76 290.8 448 41.1
TPR.G26686 Trifolium pratense HOM05D001925 ORTHO05D005701 3.8e-73 280.0 274 55.8
arahy.Tifrunner.gnm1.ann1.IM3547 Arachis hypogaea HOM05D001925 ORTHO05D005701 5.8e-66 256.1 204 67.2
arahy.Tifrunner.gnm1.ann1.FEJ64N Arachis hypogaea HOM05D001925 ORTHO05D005701 3.2e-64 250.4 208 64.4
Actinidia20895 Actinidia chinensis HOM05D001925 ORTHO05D005701 2.5e-48 197.6 167 56.9
Dinv43826 Davidia involucrata HOM05D001925 ORTHO05D005701 9.3e-40 169.1 112 80.4
FvH4_2g10060 Fragaria vesca HOM05D001925 ORTHO05D005701 3.6e-39 167.2 206 51.9
TPR.G16202 Trifolium pratense HOM05D001925 ORTHO05D005701 6.1e-39 166.4 125 70.4
MCO11G226 Micromonas commoda HOM05D001925 ORTHO05D005701 1.5e-34 151.8 580 25.9
FAN24G1219 Fragaria x ananassa HOM05D001925 ORTHO05D005701 5.5e-32 143.3 105 71.4
BraA09t40455Z Brassica rapa HOM05D001925 ORTHO05D005701 2.1e-31 141.4 110 69.1
C06p24140 Brassica napus HOM05D001925 ORTHO05D005701 7.9e-31 139.4 113 66.4
BcaC08g44824 Brassica carinata HOM05D001925 ORTHO05D005701 1.1e-29 135.6 119 60.5
CBR_g58810 Chara braunii HOM05D001925 ORTHO05D005701 5.7e-29 133.3 506 28.3
A09p50040 Brassica napus HOM05D001925 ORTHO05D005701 2.8e-28 131.0 88 78.4
FAN15G3430 Fragaria x ananassa HOM05D001925 ORTHO05D005701 4.1e-27 127.1 104 65.4
FvH4_2g10061 Fragaria vesca HOM05D001925 ORTHO05D005701 5.3e-27 126.7 97 69.1
Zm00001eb057980 Zea mays HOM05D001925 ORTHO05D005701 5.3e-27 126.7 222 37.4
A09p50030 Brassica napus HOM05D001925 ORTHO05D005701 1.0e-25 122.5 88 63.6
arahy.Tifrunner.gnm1.ann1.ZHBQ27 Arachis hypogaea HOM05D002506 ORTHO05D002879 7.9e-23 112.8 86 67.4
PRCOL_00005952 Prasinoderma coloniale HOM05D001925 ORTHO05D005701 2.3e-22 111.3 506 24.1
MBI04_g47116_MAGBIO Magnolia biondii HOM05D001925 ORTHO05D005701 6.1e-15 86.7 175 33.7
Thhalv10027287m.g Eutrema salsugineum HOM05D001925 ORTHO05D005701 2.0e-13 81.6 85 49.4
C09p49930 Brassica napus HOM05D001925 ORTHO05D039571 2.6e-13 81.3 122 44.3
BcaC07g40074 Brassica carinata HOM05D001925 ORTHO05D005701 1.2e-10 72.4 89 49.4
Cre07.g355200 Chlamydomonas reinhardtii HOM05D001925 ORTHO05D005701 6.5e-09 66.6 468 22.0
FAN22G1210 Fragaria x ananassa HOM05D001925 ORTHO05D005701 2.5e-08 64.7 126 36.5


User provided reference genes

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