Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.014G082800 Populus trichocarpa HOM05D007705 ORTHO05D009720 3.5e-29 131.0 67 100.0
Ciclev10023145m.g Citrus clementina HOM05D007705 ORTHO05D009720 1.1e-22 109.4 60 88.3
Manes.01G258400 Manihot esculenta HOM05D007705 ORTHO05D009720 9.3e-22 106.3 59 86.4
Sabra14G0060000 Salix brachista HOM05D007705 ORTHO05D009720 3.5e-21 104.4 83 71.1
Thecc.01G360600 Theobroma cacao HOM05D007705 ORTHO05D009720 1.0e-20 102.8 60 81.7
Atru.chr5.465 Acer truncatum HOM05D007705 ORTHO05D009720 1.3e-20 102.4 61 80.3
Cpa.g.sc18.244 Carica papaya HOM05D007705 ORTHO05D009720 1.8e-20 102.1 57 84.2
Duzib133G1093 Durio zibethinus HOM05D007705 ORTHO05D009720 1.8e-20 102.1 60 80.0
THA.LOC104801441 Tarenaya hassleriana HOM05D007705 ORTHO05D009720 3.9e-20 100.9 60 81.7
AL6G52940 Arabidopsis lyrata HOM05D007705 ORTHO05D009720 5.1e-20 100.5 65 76.9
Carub.0006s3673 Capsella rubella HOM05D007705 ORTHO05D009720 6.7e-20 100.1 60 78.3
TWI14G1368 Tripterygium wilfordii HOM05D007705 ORTHO05D009720 6.7e-20 100.1 57 78.9
GSVIVG01026894001 Vitis vinifera HOM05D007705 ORTHO05D009720 6.7e-20 100.1 61 80.3
AT4G00530 Arabidopsis thaliana HOM05D007705 ORTHO05D009720 1.1e-19 99.4 65 75.4
Eucgr.D02283 Eucalyptus grandis HOM05D007705 ORTHO05D009720 2.5e-19 98.2 62 72.6
CSS0048404 Camellia sinensis var. sinensis HOM05D007705 ORTHO05D009720 7.4e-19 96.7 59 76.3
Aa31LG1G11090 Aethionema arabicum HOM05D007705 ORTHO05D009720 9.6e-19 96.3 60 75.0
MSTRG.28220 Avicennia marina HOM05D007705 ORTHO05D009720 1.3e-18 95.9 63 71.4
Thhalv10009285m.g Eutrema salsugineum HOM05D007705 ORTHO05D009720 1.3e-18 95.9 57 78.9
Hund16929 Selenicereus undatus HOM05D007705 ORTHO05D009720 1.3e-18 95.9 59 74.6
Gohir.A08G130900 Gossypium hirsutum HOM05D007705 ORTHO05D009720 1.6e-18 95.5 60 73.3
Sc23g0003000 Simmondsia chinensis HOM05D007705 ORTHO05D009720 1.6e-18 95.5 59 72.9
Gohir.D08G152400 Gossypium hirsutum HOM05D007705 ORTHO05D009720 2.1e-18 95.1 60 73.3
Gorai.004G158300 Gossypium raimondii HOM05D007705 ORTHO05D009720 2.1e-18 95.1 60 73.3
Rhsim07G0016500 Rhododendron simsii HOM05D007705 ORTHO05D009720 2.1e-18 95.1 59 76.3
arahy.Tifrunner.gnm1.ann1.P4N769 Arachis hypogaea HOM05D007705 ORTHO05D009720 3.6e-18 94.4 61 68.9
arahy.Tifrunner.gnm1.ann1.SPA1YZ Arachis hypogaea HOM05D007705 ORTHO05D009720 3.6e-18 94.4 61 68.9
CARHR000600 Cardamine hirsuta HOM05D007705 ORTHO05D009720 3.6e-18 94.4 59 76.3
CiPaw.01G059800 Carya illinoinensis HOM05D007705 ORTHO05D009720 3.6e-18 94.4 61 72.1
Sed0019596 Sechium edule HOM05D007705 ORTHO05D009720 3.6e-18 94.4 61 72.1
A10p00310 Brassica napus HOM05D007705 ORTHO05D009720 4.8e-18 94.0 62 72.6
C05p00320 Brassica napus HOM05D007705 ORTHO05D009720 4.8e-18 94.0 62 72.6
BolC5t28822H Brassica oleracea HOM05D007705 ORTHO05D009720 4.8e-18 94.0 62 72.6
BraA10t42308Z Brassica rapa HOM05D007705 ORTHO05D009720 4.8e-18 94.0 62 72.6
CsaV3_3G008980 Cucumis sativus L. HOM05D007705 ORTHO05D009720 4.8e-18 94.0 61 70.5
Peaxi162Scf00008g02124 Petunia axillaris HOM05D007705 ORTHO05D009720 4.8e-18 94.0 59 76.3
Sp1g00580 Schrenkiella parvula HOM05D007705 ORTHO05D009720 4.8e-18 94.0 57 78.9
MELO3C006116.2 Cucumis melo HOM05D007705 ORTHO05D009720 6.2e-18 93.6 61 70.5
Prupe.2G168000 Prunus persica HOM05D007705 ORTHO05D009720 6.2e-18 93.6 60 71.7
Ah.05g180700 Amaranthus hybridus HOM05D007705 ORTHO05D009720 8.1e-18 93.2 59 71.2
CARHR248690 Cardamine hirsuta HOM05D007705 ORTHO05D009720 8.1e-18 93.2 60 73.3
Phvul.010G097400 Phaseolus vulgaris HOM05D007705 ORTHO05D009720 8.1e-18 93.2 61 72.1
CANSAT56G1956 Cannabis sativa HOM05D007705 ORTHO05D009720 1.1e-17 92.8 61 70.5
CAN.G116.6 Capsicum annuum HOM05D007705 ORTHO05D009720 1.1e-17 92.8 60 73.3
Cc02_g37860 Coffea canephora HOM05D007705 ORTHO05D009720 1.1e-17 92.8 59 72.9
Glyma.03G010900 Glycine max HOM05D007705 ORTHO05D009720 1.1e-17 92.8 61 72.1
Nn1g01504 Nelumbo nucifera HOM05D007705 ORTHO05D009720 1.1e-17 92.8 61 70.5
BcaB03g13609 Brassica carinata HOM05D007705 ORTHO05D009720 1.4e-17 92.4 60 71.7
ClCG05G001590 Citrullus lanatus HOM05D007705 ORTHO05D009720 1.8e-17 92.0 61 70.5
Medtr8g031010 Medicago truncatula HOM05D007705 ORTHO05D009720 1.8e-17 92.0 61 70.5
PGR031G2440 Punica granatum HOM05D007705 ORTHO05D009720 2.4e-17 91.7 60 68.3
EL10Ac1g00428 Beta vulgaris HOM05D003942 ORTHO05D004527 3.1e-17 91.3 59 69.5
RcHm_v2.0_Chr1g0355061 Rosa chinensis HOM05D007705 ORTHO05D009720 5.3e-17 90.5 57 73.7
SalBow5G0166 Salvia bowleyana HOM05D007705 ORTHO05D009720 5.3e-17 90.5 61 67.2
AUR62004343 Chenopodium quinoa HOM05D007705 ORTHO05D009720 6.9e-17 90.1 60 68.3
FvH4_7g14160 Fragaria vesca HOM05D007705 ORTHO05D009720 6.9e-17 90.1 57 71.9
FAN03G0317 Fragaria x ananassa HOM05D007705 ORTHO05D009720 6.9e-17 90.1 57 71.9
FAN06G1915 Fragaria x ananassa HOM05D007705 ORTHO05D009720 6.9e-17 90.1 57 71.9
FAN10G2029 Fragaria x ananassa HOM05D007705 ORTHO05D009720 6.9e-17 90.1 57 71.9
Lsat_1_v5_gn_4_36241 Lactuca sativa HOM05D007705 ORTHO05D009720 6.9e-17 90.1 57 73.7
CDE02G0341 Ceratophyllum demersum HOM05D007705 ORTHO05D009720 9.0e-17 89.7 61 68.9
TPR.G15966 Trifolium pratense HOM05D007705 ORTHO05D009720 9.0e-17 89.7 61 67.2
FAN10G0144 Fragaria x ananassa HOM05D003942 ORTHO05D004527 2.0e-16 88.6 57 70.2
RcHm_v2.0_Chr1g0354811 Rosa chinensis HOM05D007705 ORTHO05D009720 2.0e-16 88.6 57 71.9
Migut.N01439 Erythranthe guttata HOM05D007705 ORTHO05D009720 2.6e-16 88.2 66 63.6
HanXRQChr16g0522821 Helianthus annuus HOM05D007705 ORTHO05D009720 2.6e-16 88.2 57 70.2
Lalb_Chr17g0339761 Lupinus albus HOM05D007705 ORTHO05D009720 2.6e-16 88.2 61 65.6
Sed0007089 Sechium edule HOM05D007705 ORTHO05D009720 3.4e-16 87.8 61 65.6
AT1G01725 Arabidopsis thaliana HOM05D007705 ORTHO05D009720 4.5e-16 87.4 59 69.5
Aqoxy2G01039 Aquilegia oxysepala HOM05D007705 ORTHO05D009720 5.8e-16 87.0 61 65.6
PSO478G4887 Papaver somniferum HOM05D007705 ORTHO05D009720 1.3e-15 85.9 61 65.6
PGSC0003DMG400010270 Solanum tuberosum HOM05D007705 ORTHO05D009720 1.7e-15 85.5 59 69.5
arahy.Tifrunner.gnm1.ann1.1PM303 Arachis hypogaea HOM05D007705 ORTHO05D009720 6.4e-15 83.6 61 60.7
MD07G1139100 Malus domestica HOM05D007705 ORTHO05D009720 6.4e-15 83.6 57 66.7
Lj3g0020568 Lotus japonicus HOM05D007705 ORTHO05D009720 8.4e-15 83.2 61 60.7
ATR0680G396 Amborella trichopoda HOM05D007705 ORTHO05D009720 1.4e-14 82.4 60 63.3
arahy.Tifrunner.gnm1.ann1.ELVS11 Arachis hypogaea HOM05D007705 ORTHO05D009720 1.4e-14 82.4 62 64.5
arahy.Tifrunner.gnm1.ann1.UQ99Y2 Arachis hypogaea HOM05D007705 ORTHO05D009720 1.4e-14 82.4 62 61.3
Glyma.18G231800 Glycine max HOM05D007705 ORTHO05D009720 3.2e-14 81.3 61 60.7
unitig_22.g6810 Utricularia gibba HOM05D007705 ORTHO05D009720 7.1e-14 80.1 58 63.8
arahy.Tifrunner.gnm1.ann1.5FJ7GX Arachis hypogaea HOM05D007705 ORTHO05D009720 9.3e-14 79.7 61 62.3
SHI13438 Sapria himalayana HOM05D007705 ORTHO05D009720 9.3e-14 79.7 61 57.4
RcHm_v2.0_Chr4g0404631 Rosa chinensis HOM05D007705 ORTHO05D009720 2.3e-12 75.1 57 64.9
FAN01G1472 Fragaria x ananassa HOM05D007705 ORTHO05D009720 1.9e-11 72.0 93 44.1
Nitab4.5_0007064g0050 Nicotiana tabacum HOM05D007705 ORTHO05D009720 2.5e-11 71.6 42 76.2
COL.COLO4_12699 Corchorus olitorius HOM05D007705 ORTHO05D009720 4.3e-11 70.9 43 69.8
MBI18_g25521_MAGBIO Magnolia biondii HOM05D007705 ORTHO05D009720 5.6e-11 70.5 60 60.0
FAN06G1047 Fragaria x ananassa HOM05D007705 ORTHO05D009720 1.6e-10 68.9 87 46.0
VMungo0331G1758 Vigna mungo HOM05D007705 ORTHO05D009720 1.6e-10 68.9 57 59.6
ECA234G1137 Erigeron canadensis HOM05D003942 ORTHO05D004527 4.8e-10 67.4 48 64.6
Nitab4.5_0000386g0120 Nicotiana tabacum HOM05D007705 ORTHO05D009720 4.8e-10 67.4 39 76.9
Hma1.2p1_0001F.1_g001390 Hydrangea macrophylla HOM05D007705 ORTHO05D009720 3.1e-09 64.7 46 63.0
FAN28G2457 Fragaria x ananassa HOM05D007705 ORTHO05D009720 2.0e-08 62.0 55 50.9
FAN10G1187 Fragaria x ananassa HOM05D007705 ORTHO05D009720 2.2e-07 58.5 57 50.9
Glyma.07G072000 Glycine max HOM05D007705 ORTHO05D009720 2.5e-06 55.1 37 67.6


User provided reference genes

Program Settings