Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.014G082600 Populus trichocarpa HOM05D005367 ORTHO05D006328 9.5e-99 364.4 336 100.0
Potri.002G158500 Populus trichocarpa HOM05D005367 ORTHO05D006328 7.1e-70 268.5 161 82.6
Sabra14G0059900 Salix brachista HOM05D005367 ORTHO05D006328 4.6e-61 239.2 211 63.5
Manes.05G036200 Manihot esculenta HOM05D005367 ORTHO05D006328 2.1e-45 187.2 169 62.1
Manes.01G258500 Manihot esculenta HOM05D005367 ORTHO05D006328 3.5e-45 186.4 169 60.4
Dinv43805 Davidia involucrata HOM05D005367 ORTHO05D006328 1.5e-40 171.0 177 52.5
QL08p049031 Quercus lobata HOM05D005367 ORTHO05D006328 3.4e-40 169.9 159 54.7
CSS0040093 Camellia sinensis var. sinensis HOM05D005367 ORTHO05D006328 2.7e-37 160.2 163 49.7
CSS0033809 Camellia sinensis var. sinensis HOM05D005367 ORTHO05D006328 3.5e-37 159.8 166 49.4
Hma1.2p1_0001F.1_g001380 Hydrangea macrophylla HOM05D005367 ORTHO05D006328 3.5e-37 159.8 172 51.7
Ciclev10021865m.g Citrus clementina HOM05D005367 ORTHO05D006328 4.6e-37 159.5 168 49.4
TWI14G0016 Tripterygium wilfordii HOM05D005367 ORTHO05D006328 4.6e-37 159.5 173 50.3
MD07G1139200 Malus domestica HOM05D005367 ORTHO05D006328 8.7e-36 155.2 169 52.1
Cpa.g.sc18.245 Carica papaya HOM05D005367 ORTHO05D006328 1.9e-35 154.1 170 50.0
GSVIVG01026893001 Vitis vinifera HOM05D005367 ORTHO05D006328 1.9e-35 154.1 158 53.2
Prupe.2G167900 Prunus persica HOM05D005367 ORTHO05D006328 3.3e-35 153.3 159 50.9
Actinidia20916 Actinidia chinensis HOM05D005367 ORTHO05D006328 7.4e-35 152.1 164 52.4
vmacro13291 Vaccinium macrocarpon HOM05D005367 ORTHO05D006328 7.4e-35 152.1 162 51.2
Duzib133G0249 Durio zibethinus HOM05D005367 ORTHO05D006328 2.8e-34 150.2 160 51.9
Gohir.D08G152300 Gossypium hirsutum HOM05D005367 ORTHO05D006328 4.8e-34 149.4 166 49.4
Haze_15487 Corylus avellana HOM05D005367 ORTHO05D006328 8.2e-34 148.7 175 49.7
CiPaw.02G029900 Carya illinoinensis HOM05D005367 ORTHO05D006328 1.1e-33 148.3 175 46.9
Atru.chr5.466 Acer truncatum HOM05D005367 ORTHO05D006328 1.8e-33 147.5 159 49.1
Glyma.18G231900 Glycine max HOM05D005367 ORTHO05D006328 1.8e-33 147.5 172 45.3
Thecc.01G360700 Theobroma cacao HOM05D005367 ORTHO05D006328 1.8e-33 147.5 162 50.6
MD01G1057500 Malus domestica HOM05D005367 ORTHO05D006328 2.4e-33 147.1 161 52.8
Eucgr.E00158 Eucalyptus grandis HOM05D005367 ORTHO05D006328 3.1e-33 146.7 159 50.9
Gorai.004G158200 Gossypium raimondii HOM05D005367 ORTHO05D006328 4.1e-33 146.4 166 48.8
Gohir.D11G092400 Gossypium hirsutum HOM05D005367 ORTHO05D006328 5.3e-33 146.0 167 51.5
PGR031G3282 Punica granatum HOM05D005367 ORTHO05D006328 5.3e-33 146.0 164 44.5
Cfa003939 Carpinus fangiana HOM05D005367 ORTHO05D006328 6.9e-33 145.6 179 48.0
Gorai.007G098700 Gossypium raimondii HOM05D005367 ORTHO05D006328 6.9e-33 145.6 167 51.5
Gohir.A08G130800 Gossypium hirsutum HOM05D005367 ORTHO05D006328 9.0e-33 145.2 165 48.5
RcHm_v2.0_Chr1g0355051 Rosa chinensis HOM05D005367 ORTHO05D006328 9.0e-33 145.2 160 46.9
Lj9A582T87 Lonicera japonica HOM05D005367 ORTHO05D006328 5.9e-32 142.5 167 49.7
Nn1g01501 Nelumbo nucifera HOM05D005367 ORTHO05D006328 5.9e-32 142.5 175 45.1
Nitab4.5_0008050g0010 Nicotiana tabacum HOM05D005367 ORTHO05D006328 7.7e-32 142.1 163 47.2
Gohir.A11G088100 Gossypium hirsutum HOM05D005367 ORTHO05D006328 1.7e-31 141.0 167 50.3
Nitab4.5_0001702g0150 Nicotiana tabacum HOM05D005367 ORTHO05D006328 1.7e-31 141.0 166 45.8
COL.COLO4_12698 Corchorus olitorius HOM05D005367 ORTHO05D006328 6.5e-31 139.0 168 46.4
Lalb_Chr24g0401631 Lupinus albus HOM05D005367 ORTHO05D006328 1.4e-30 137.9 154 46.1
Oeu056369.1 Olea europaea HOM05D005367 ORTHO05D006328 3.2e-30 136.7 157 43.3
Peaxi162Scf00191g01425 Petunia axillaris HOM05D005367 ORTHO05D006328 3.2e-30 136.7 168 45.2
Lalb_Chr01g0011531 Lupinus albus HOM05D005367 ORTHO05D006328 4.2e-30 136.3 154 45.5
Sabra02G0126000 Salix brachista HOM05D005367 ORTHO05D006328 4.2e-30 136.3 150 54.0
TWI59G0064 Tripterygium wilfordii HOM05D005367 ORTHO05D006328 5.5e-30 136.0 177 45.2
Hund16930 Selenicereus undatus HOM05D005367 ORTHO05D006328 1.2e-29 134.8 168 47.0
PGR042G0868 Punica granatum HOM05D005367 ORTHO05D006328 1.6e-29 134.4 174 44.3
Eucgr.D02282 Eucalyptus grandis HOM05D005367 ORTHO05D006328 2.7e-29 133.7 166 42.8
FAN10G0042 Fragaria x ananassa HOM05D005367 ORTHO05D006328 2.7e-29 133.7 164 48.8
TAR636G2389 Trochodendron aralioides HOM05D003133 ORTHO05D003642 4.6e-29 132.9 177 44.1
FAN01G2456 Fragaria x ananassa HOM05D005367 ORTHO05D006328 7.9e-29 132.1 164 48.2
Ca_07909_v3 Cicer arietinum L. HOM05D005367 ORTHO05D006328 1.4e-28 131.3 158 42.4
FAN03G1221 Fragaria x ananassa HOM05D005367 ORTHO05D006328 2.3e-28 130.6 164 48.2
Solyc05g049880.3 Solanum lycopersicum HOM05D005367 ORTHO05D006328 2.3e-28 130.6 170 45.3
Sopen05g028210 Solanum pennellii HOM05D005367 ORTHO05D006328 2.3e-28 130.6 169 44.4
FvH4_7g14150 Fragaria vesca HOM05D005367 ORTHO05D006328 3.0e-28 130.2 164 48.2
TAR375G0799 Trochodendron aralioides HOM05D005367 ORTHO05D006328 3.0e-28 130.2 168 46.4
HanXRQChr16g0522831 Helianthus annuus HOM05D005367 ORTHO05D006328 6.7e-28 129.0 167 43.7
Cc02_g37850 Coffea canephora HOM05D005367 ORTHO05D006328 8.8e-28 128.6 164 39.6
RcHm_v2.0_Chr1g0354801 Rosa chinensis HOM05D005367 ORTHO05D006328 8.8e-28 128.6 160 45.6
FAN06G0563 Fragaria x ananassa HOM05D005367 ORTHO05D006328 1.1e-27 128.3 164 47.6
PGSC0003DMG400021656 Solanum tuberosum HOM05D005367 ORTHO05D006328 1.5e-27 127.9 169 43.2
Lj1g0004821 Lotus japonicus HOM05D005367 ORTHO05D006328 2.5e-27 127.1 166 42.8
SalBow3G2019 Salvia bowleyana HOM05D005367 ORTHO05D006328 2.5e-27 127.1 157 43.9
Sc01g0003360 Simmondsia chinensis HOM05D005367 ORTHO05D006328 2.5e-27 127.1 173 41.6
THA.LOC104801446 Tarenaya hassleriana HOM05D005367 ORTHO05D006328 5.7e-27 125.9 157 44.6
MSTRG.20826 Avicennia marina HOM05D005367 ORTHO05D006328 1.3e-26 124.8 163 44.8
Migut.B01742 Erythranthe guttata HOM05D005367 ORTHO05D006328 1.7e-26 124.4 166 44.6
Nn6g33454 Nelumbo nucifera HOM05D005367 ORTHO05D006328 1.7e-26 124.4 170 42.4
SGA_v2.0_scaffold11G05663 Striga asiatica HOM05D000368 ORTHO05D006328 1.7e-26 124.4 159 43.4
arahy.Tifrunner.gnm1.ann1.G5US7K Arachis hypogaea HOM05D005367 ORTHO05D006328 3.7e-26 123.2 164 39.6
ClCG06G003800 Citrullus lanatus HOM05D005367 ORTHO05D006328 3.7e-26 123.2 169 44.4
arahy.Tifrunner.gnm1.ann1.D8DQXR Arachis hypogaea HOM05D005367 ORTHO05D006328 6.3e-26 122.5 164 39.0
CANSAT56G3377 Cannabis sativa HOM05D005367 ORTHO05D006328 3.1e-25 120.2 157 41.4
TPR.G37815 Trifolium pratense HOM05D005367 ORTHO05D006328 4.1e-25 119.8 158 39.9
Sp1g00570 Schrenkiella parvula HOM05D005367 ORTHO05D006328 1.2e-24 118.2 159 40.9
unitig_61.g26388 Utricularia gibba HOM05D005367 ORTHO05D006328 2.0e-24 117.5 158 41.8
EL10Ac1g00429 Beta vulgaris HOM05D005367 ORTHO05D006328 3.4e-24 116.7 157 42.0
MELO3C021217.2 Cucumis melo HOM05D005367 ORTHO05D006328 3.4e-24 116.7 162 41.4
Psat3g109400 Pisum sativum HOM05D005367 ORTHO05D006328 3.4e-24 116.7 159 38.4
CsaV3_6G000470 Cucumis sativus L. HOM05D005367 ORTHO05D006328 5.9e-24 115.9 162 38.9
Lsat_1_v5_gn_4_36280 Lactuca sativa HOM05D005367 ORTHO05D006328 7.7e-24 115.5 179 40.8
FAN10G3657 Fragaria x ananassa HOM05D005367 ORTHO05D006328 1.7e-23 114.4 170 39.4
VMungo1383G2792 Vigna mungo HOM05D005367 ORTHO05D006328 1.7e-23 114.4 164 39.6
FAN10G4254 Fragaria x ananassa HOM05D005367 ORTHO05D006328 2.2e-23 114.0 171 39.2
RcHm_v2.0_Chr1g0377581 Rosa chinensis HOM05D005367 ORTHO05D006328 2.9e-23 113.6 159 39.0
Medtr7g077380 Medicago truncatula HOM05D005367 ORTHO05D006328 3.8e-23 113.2 158 37.3
Manes.06G148200 Manihot esculenta HOM05D005367 ORTHO05D006328 5.0e-23 112.8 166 39.2
FvH4_7g29600 Fragaria vesca HOM05D005367 ORTHO05D006328 1.1e-22 111.7 171 38.6
PSO782G1827 Papaver somniferum HOM05D005367 ORTHO05D006328 1.1e-22 111.7 171 42.1
Sed0017642 Sechium edule HOM05D005367 ORTHO05D006328 1.1e-22 111.7 153 43.1
Ah.05g180710 Amaranthus hybridus HOM05D005367 ORTHO05D006328 2.5e-22 110.5 157 43.3
C08p53830 Brassica napus HOM05D006991 ORTHO05D009188 3.2e-22 110.2 157 38.9
BolC8t52897H Brassica oleracea HOM05D000368 ORTHO05D000289 3.2e-22 110.2 157 38.9
AUR62004342 Chenopodium quinoa HOM05D005367 ORTHO05D006328 4.2e-22 109.8 142 43.0
PSO478G0766 Papaver somniferum HOM05D005367 ORTHO05D006328 5.5e-22 109.4 173 41.6
Phvul.008G065800 Phaseolus vulgaris HOM05D005367 ORTHO05D006328 5.5e-22 109.4 154 39.6
Atru.chr1.441 Acer truncatum HOM05D005367 ORTHO05D006328 9.4e-22 108.6 166 36.7
AL1G10610 Arabidopsis lyrata HOM05D005367 ORTHO05D006328 9.4e-22 108.6 160 39.4
Ciclev10006075m.g Citrus clementina HOM05D005367 ORTHO05D006328 1.2e-21 108.2 153 38.6
ECA234G3275 Erigeron canadensis HOM05D005367 ORTHO05D006328 2.1e-21 107.5 150 42.0
VMungo1383G2823 Vigna mungo HOM05D005367 ORTHO05D006328 4.7e-21 106.3 156 39.1
Thhalv10008538m.g Eutrema salsugineum HOM05D005367 ORTHO05D006328 7.9e-21 105.5 163 38.0
BraA09t42260Z Brassica rapa HOM05D005367 ORTHO05D006328 1.8e-20 104.4 157 37.6
Duzib205G1257 Durio zibethinus HOM05D005367 ORTHO05D006328 2.3e-20 104.0 151 37.7
Carub.0001s0048 Capsella rubella HOM05D005367 ORTHO05D006328 6.7e-20 102.4 155 35.5
QL09p013904 Quercus lobata HOM05D005367 ORTHO05D006328 6.7e-20 102.4 169 35.5
AT1G01730 Arabidopsis thaliana HOM05D005367 ORTHO05D006328 8.8e-20 102.1 159 37.7
Atru.chr1.440 Acer truncatum HOM05D005367 ORTHO05D006328 1.1e-19 101.7 157 41.4
MD01G1202200 Malus domestica HOM05D005367 ORTHO05D006328 3.3e-19 100.1 151 41.7
COL.COLO4_14330 Corchorus olitorius HOM05D005367 ORTHO05D006328 2.8e-18 97.1 183 32.2
HPP92_022052 Vanilla planifolia HOM05D005367 ORTHO05D006328 2.8e-18 97.1 143 37.8
HPP92_027620 Vanilla planifolia HOM05D005367 ORTHO05D006328 3.7e-18 96.7 143 37.8
DCAR_010300 Daucus carota HOM05D005367 ORTHO05D006328 8.2e-18 95.5 166 36.1
Aqoxy7G00339 Aquilegia oxysepala HOM05D005367 ORTHO05D006328 2.4e-17 94.0 145 35.2
FAN03G1577 Fragaria x ananassa HOM05D005367 ORTHO05D006328 7.0e-17 92.4 138 39.9
vmacro06668 Vaccinium macrocarpon HOM05D005367 ORTHO05D006328 2.9e-15 87.0 156 36.5
FAN10G2377 Fragaria x ananassa HOM05D005367 ORTHO05D006328 5.5e-14 82.8 68 60.3
FAN28G3009 Fragaria x ananassa HOM05D005367 ORTHO05D006328 5.5e-14 82.8 68 60.3
FAN10G0871 Fragaria x ananassa HOM05D005367 ORTHO05D006328 1.2e-13 81.6 102 45.1
FAN10G3879 Fragaria x ananassa HOM05D005367 ORTHO05D006328 4.7e-13 79.7 102 44.1
FAN06G3705 Fragaria x ananassa HOM05D005367 ORTHO05D006328 1.0e-12 78.6 171 32.7
FAN06G4288 Fragaria x ananassa HOM05D005367 ORTHO05D006328 1.0e-12 78.6 171 32.7
MBI17_g24635_MAGBIO Magnolia biondii HOM05D005367 ORTHO05D006328 1.8e-12 77.8 205 27.8
Potri.015G145000 Populus trichocarpa HOM05D005367 ORTHO05D006328 5.2e-12 76.3 149 35.6
FAN10G1555 Fragaria x ananassa HOM05D005367 ORTHO05D006328 6.7e-12 75.9 111 45.0
Rhsim03G0187100 Rhododendron simsii HOM05D005367 ORTHO05D006328 8.8e-12 75.5 184 31.5
DCAR_000242 Daucus carota HOM05D005367 ORTHO05D006328 1.5e-11 74.7 106 41.5
Prupe.2G295600 Prunus persica HOM05D005367 ORTHO05D006328 2.0e-11 74.3 118 44.1
AUR62022549 Chenopodium quinoa HOM05D005367 ORTHO05D006328 3.3e-11 73.6 113 43.4
Dinv35219 Davidia involucrata HOM05D005367 ORTHO05D006328 4.8e-10 69.7 150 32.0
Actinidia34119 Actinidia chinensis HOM05D005367 ORTHO05D006328 1.4e-09 68.2 140 32.9
MD01G1056800 Malus domestica HOM05D005367 ORTHO05D006328 1.4e-09 68.2 92 46.7
Aa31LG1G11100 Aethionema arabicum HOM05D005367 ORTHO05D006328 7.0e-09 65.9 54 51.9
CDE08G1175 Ceratophyllum demersum HOM05D005367 ORTHO05D006328 1.7e-07 61.2 120 36.7
Aa31LG1G11110 Aethionema arabicum HOM05D005367 ORTHO05D006328 1.5e-06 58.2 103 35.9
AUR62022543 Chenopodium quinoa HOM05D000713 ORTHO05D000547 3.2e-06 57.0 62 43.5


User provided reference genes

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