Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.014G079700 Populus trichocarpa HOM05D005332 ORTHO05D006861 3.0e-179 631.7 319 100.0
Sabra14G0057900 Salix brachista HOM05D005332 ORTHO05D006861 1.1e-168 596.7 319 94.0
Manes.01G260300 Manihot esculenta HOM05D005332 ORTHO05D006861 1.1e-136 490.3 320 78.8
Haze_15198 Corylus avellana HOM05D005332 ORTHO05D006861 1.2e-132 476.9 315 77.1
vmacro13319 Vaccinium macrocarpon HOM05D005332 ORTHO05D006861 1.2e-132 476.9 315 76.8
Rhsim07G0018900 Rhododendron simsii HOM05D005332 ORTHO05D006861 8.1e-132 474.2 312 77.6
Actinidia09995 Actinidia chinensis HOM05D000602 ORTHO05D002573 8.9e-131 470.7 315 75.2
Thecc.01G365300 Theobroma cacao HOM05D005332 ORTHO05D006861 1.7e-129 466.5 316 76.3
Eucgr.E00187 Eucalyptus grandis HOM05D005332 ORTHO05D006861 2.9e-129 465.7 314 75.2
Duzib138G1089 Durio zibethinus HOM05D005332 ORTHO05D006861 4.9e-129 464.9 318 74.8
GSVIVG01026821001 Vitis vinifera HOM05D005332 ORTHO05D006861 4.9e-129 464.9 317 75.4
CSS0028869 Camellia sinensis var. sinensis HOM05D005332 ORTHO05D006861 8.3e-129 464.2 321 74.5
CSS0045846 Camellia sinensis var. sinensis HOM05D005332 ORTHO05D006861 2.4e-128 462.6 321 74.1
Gohir.D11G091000 Gossypium hirsutum HOM05D005332 ORTHO05D006861 2.4e-128 462.6 316 74.7
Gorai.007G097000 Gossypium raimondii HOM05D005332 ORTHO05D006861 7.1e-128 461.1 316 74.4
Lj9A579T30 Lonicera japonica HOM05D005332 ORTHO05D006861 7.1e-128 461.1 317 74.4
TAR374G0257 Trochodendron aralioides HOM05D005332 ORTHO05D006861 9.2e-128 460.7 316 75.9
TWI59G1218 Tripterygium wilfordii HOM05D005332 ORTHO05D006861 1.6e-127 459.9 314 74.8
Cpa.g.sc704.3 Carica papaya HOM05D005332 ORTHO05D006861 2.1e-127 459.5 316 74.7
FAN03G0731 Fragaria x ananassa HOM05D005332 ORTHO05D006861 3.5e-127 458.8 316 75.3
FAN06G0948 Fragaria x ananassa HOM05D005332 ORTHO05D006861 1.3e-126 456.8 316 75.0
FAN06G1647 Fragaria x ananassa HOM05D005332 ORTHO05D006861 1.7e-126 456.4 316 74.7
Gohir.A11G082100 Gossypium hirsutum HOM05D005332 ORTHO05D006861 3.0e-126 455.7 316 74.4
FAN01G1890 Fragaria x ananassa HOM05D005332 ORTHO05D006861 6.6e-126 454.5 316 74.7
FvH4_7g13560 Fragaria vesca HOM05D005332 ORTHO05D006861 8.6e-126 454.1 316 75.0
FAN10G1762 Fragaria x ananassa HOM05D005332 ORTHO05D006861 1.1e-125 453.8 316 74.7
MD07G1128800 Malus domestica HOM05D005332 ORTHO05D006861 1.1e-125 453.8 319 74.3
RcHm_v2.0_Chr1g0353111 Rosa chinensis HOM05D005332 ORTHO05D006861 1.1e-125 453.8 316 73.7
CAN.G78.17 Capsicum annuum HOM05D005332 ORTHO05D006861 2.5e-125 452.6 319 70.2
Ciclev10021196m.g Citrus clementina HOM05D005332 ORTHO05D006861 2.5e-125 452.6 317 74.4
Sopen01g037990 Solanum pennellii HOM05D005332 ORTHO05D006861 5.6e-125 451.4 319 70.5
Prupe.2G159800 Prunus persica HOM05D005332 ORTHO05D006861 7.3e-125 451.1 317 72.9
QL08p049836 Quercus lobata HOM05D005332 ORTHO05D006861 7.3e-125 451.1 349 69.6
Solyc01g094190.3 Solanum lycopersicum HOM05D005332 ORTHO05D006861 9.6e-125 450.7 319 70.2
PGSC0003DMG402000019 Solanum tuberosum HOM05D005332 ORTHO05D006861 1.2e-124 450.3 319 70.2
CANSAT56G3547 Cannabis sativa HOM05D005332 ORTHO05D006861 3.1e-123 445.7 313 74.4
Peaxi162Scf00397g00521 Petunia axillaris HOM05D005332 ORTHO05D006861 3.1e-123 445.7 317 69.4
Aqoxy5G03955 Aquilegia oxysepala HOM05D005332 ORTHO05D006861 9.9e-122 440.7 316 71.5
Sed0022570 Sechium edule HOM05D005332 ORTHO05D006861 9.9e-122 440.7 312 70.5
Medtr8g032270 Medicago truncatula HOM05D005332 ORTHO05D006861 2.2e-121 439.5 315 69.2
Glyma.07G075200 Glycine max HOM05D005332 ORTHO05D006861 3.8e-121 438.7 319 70.8
Nitab4.5_0001251g0070 Nicotiana tabacum HOM05D005332 ORTHO05D006861 3.8e-121 438.7 319 68.7
Oeu014686.1 Olea europaea HOM05D005332 ORTHO05D006861 3.8e-121 438.7 320 69.1
Phvul.010G093900 Phaseolus vulgaris HOM05D005332 ORTHO05D006861 3.8e-121 438.7 316 71.8
RcHm_v2.0_Chr0c39g0503341 Rosa chinensis HOM05D005332 ORTHO05D006861 4.9e-121 438.3 318 71.7
MELO3C022535.2 Cucumis melo HOM05D005332 ORTHO05D006861 6.4e-121 438.0 315 69.5
EL10Ac1g00521 Beta vulgaris HOM05D005332 ORTHO05D006861 8.4e-121 437.6 312 70.8
THA.LOC104801453 Tarenaya hassleriana HOM05D005332 ORTHO05D006861 8.4e-121 437.6 317 69.1
TPR.G9802 Trifolium pratense HOM05D005332 ORTHO05D006861 8.4e-121 437.6 319 69.0
CsaV3_6G005760 Cucumis sativus L. HOM05D005332 ORTHO05D006861 1.1e-120 437.2 317 69.1
COL.COLO4_12599 Corchorus olitorius HOM05D005332 ORTHO05D006861 7.1e-120 434.5 318 70.8
ClCG06G000030 Citrullus lanatus HOM05D005332 ORTHO05D006861 1.2e-119 433.7 341 66.6
Lalb_Chr04g0256681 Lupinus albus HOM05D005332 ORTHO05D006861 1.2e-119 433.7 316 69.9
Sp6g00600 Schrenkiella parvula HOM05D005332 ORTHO05D006861 1.2e-119 433.7 316 70.3
Aa31LG5G430 Aethionema arabicum HOM05D005332 ORTHO05D006861 1.6e-119 433.3 317 69.4
HPP92_025722 Vanilla planifolia HOM05D005332 ORTHO05D006861 1.6e-119 433.3 316 69.6
MSTRG.28212 Avicennia marina HOM05D005332 ORTHO05D006861 2.7e-119 432.6 318 68.9
Lsat_1_v5_gn_3_136741 Lactuca sativa HOM05D005332 ORTHO05D006861 4.6e-119 431.8 316 68.4
Ah.05g176380 Amaranthus hybridus HOM05D005332 ORTHO05D006861 7.8e-119 431.0 319 68.7
Cc02_g37460 Coffea canephora HOM05D005332 ORTHO05D006861 7.8e-119 431.0 313 69.3
Thhalv10028798m.g Eutrema salsugineum HOM05D005332 ORTHO05D006861 7.8e-119 431.0 318 68.6
VMungo0331G0206 Vigna mungo HOM05D005332 ORTHO05D006861 1.7e-118 429.9 315 70.5
MBI18_g09781_MAGBIO Magnolia biondii HOM05D005332 ORTHO05D006861 2.3e-118 429.5 315 70.5
AL6G52870 Arabidopsis lyrata HOM05D005332 ORTHO05D006861 3.9e-118 428.7 318 69.2
PSO782G1310 Papaver somniferum HOM05D005332 ORTHO05D006861 3.9e-118 428.7 319 69.6
Nn6g33539 Nelumbo nucifera HOM05D005332 ORTHO05D006861 5.1e-118 428.3 315 69.5
ECA240G0419 Erigeron canadensis HOM05D005332 ORTHO05D006861 8.7e-118 427.6 315 67.3
Lj3g0013979 Lotus japonicus HOM05D005332 ORTHO05D006861 8.7e-118 427.6 319 68.7
Hund27309 Selenicereus undatus HOM05D005332 ORTHO05D006861 8.7e-118 427.6 315 68.6
arahy.Tifrunner.gnm1.ann1.CH4HI7 Arachis hypogaea HOM05D005332 ORTHO05D006861 7.3e-117 424.5 325 66.8
Ca_18844_v3 Cicer arietinum L. HOM05D005332 ORTHO05D006861 7.3e-117 424.5 306 71.6
HanXRQChr03g0093511 Helianthus annuus HOM05D005332 ORTHO05D006861 1.6e-116 423.3 315 68.9
arahy.Tifrunner.gnm1.ann1.W4LYDN Arachis hypogaea HOM05D005332 ORTHO05D006861 2.1e-116 422.9 325 66.8
SalBow5G4657 Salvia bowleyana HOM05D005332 ORTHO05D006861 2.1e-116 422.9 314 70.1
AT4G00560 Arabidopsis thaliana HOM05D005332 ORTHO05D006861 1.1e-115 420.6 320 68.4
BcaB01g02194 Brassica carinata HOM05D005332 ORTHO05D006861 1.1e-115 420.6 324 69.1
Zm00001eb259270 Zea mays HOM05D005332 ORTHO05D006861 1.4e-115 420.2 317 68.5
Migut.O00555 Erythranthe guttata HOM05D005332 ORTHO05D006861 3.1e-115 419.1 316 69.0
Nitab4.5_0006669g0040 Nicotiana tabacum HOM05D005332 ORTHO05D006861 3.1e-115 419.1 370 59.2
Os02g0826200 Oryza sativa ssp. japonica HOM05D005332 ORTHO05D006861 5.3e-115 418.3 315 67.0
SGA_v2.0_scaffold43G16446 Striga asiatica HOM05D005332 ORTHO05D006861 5.3e-115 418.3 328 66.8
C02p38040 Brassica napus HOM05D005332 ORTHO05D006861 6.9e-115 417.9 321 68.8
A02p24170 Brassica napus HOM05D005332 ORTHO05D006861 9.0e-115 417.5 321 68.8
BcaC03g16043 Brassica carinata HOM05D005332 ORTHO05D006861 1.5e-114 416.8 321 68.8
BraA02t07408Z Brassica rapa HOM05D005332 ORTHO05D006861 2.0e-114 416.4 321 68.5
Carub.0006s3668 Capsella rubella HOM05D005332 ORTHO05D006861 2.6e-114 416.0 317 69.1
Atru.chr5.441 Acer truncatum HOM05D005332 ORTHO05D006861 7.6e-114 414.5 280 73.6
PSO478G0627 Papaver somniferum HOM05D005332 ORTHO05D006861 2.2e-113 412.9 337 66.5
AUR62004310 Chenopodium quinoa HOM05D005332 ORTHO05D006861 6.4e-113 411.4 315 64.8
BolC2t09820H Brassica oleracea HOM05D005332 ORTHO05D006861 3.2e-112 409.1 333 66.4
CDE09G0818 Ceratophyllum demersum HOM05D005332 ORTHO05D006861 2.7e-111 406.0 300 69.0
SalBow5G2488 Salvia bowleyana HOM05D005332 ORTHO05D006861 9.6e-109 397.5 295 69.5
ATR0680G024 Amborella trichopoda HOM05D005332 ORTHO05D006861 6.2e-108 394.8 314 62.1
RcHm_v2.0_Chr1g0353281 Rosa chinensis HOM05D005332 ORTHO05D006861 6.2e-108 394.8 259 77.6
DCAR_006914 Daucus carota HOM05D005332 ORTHO05D006861 8.1e-108 394.4 314 64.3
SEGI_02313 Sequoiadendron giganteum HOM05D005332 ORTHO05D006861 5.8e-106 388.3 313 63.6
PGR042G0753 Punica granatum HOM05D005332 ORTHO05D006861 9.9e-106 387.5 275 71.6
Migut.N01426 Erythranthe guttata HOM05D005332 ORTHO05D006861 7.1e-104 381.3 281 69.8
RcHm_v2.0_Chr1g0353141 Rosa chinensis HOM05D005332 ORTHO05D006861 1.3e-100 370.5 242 79.8
CiPaw.01G056200 Carya illinoinensis HOM05D005332 ORTHO05D006861 2.4e-99 366.3 239 77.4
RcHm_v2.0_Chr1g0353331 Rosa chinensis HOM05D005332 ORTHO05D006861 5.5e-96 355.1 230 80.0
CARHR248730 Cardamine hirsuta HOM05D005332 ORTHO05D006861 2.3e-94 349.7 239 72.8
Mapoly0113s0013 Marchantia polymorpha HOM05D005332 ORTHO05D006861 5.8e-90 335.1 317 55.5
Pp3c6_20490 Physcomitrium patens HOM05D005332 ORTHO05D006861 5.0e-89 332.0 318 53.8
RcHm_v2.0_Chr1g0353241 Rosa chinensis HOM05D005332 ORTHO05D006861 3.2e-88 329.3 239 72.8
Sc23g0003120 Simmondsia chinensis HOM05D005332 ORTHO05D006861 7.2e-88 328.2 234 68.8
Dinv43779 Davidia involucrata HOM05D005332 ORTHO05D006861 1.0e-86 324.3 223 75.3
SMO137G0161 Selaginella moellendorffii HOM05D005332 ORTHO05D006861 6.3e-84 315.1 311 54.0
unitig_0.g1508 Utricularia gibba HOM05D005332 ORTHO05D006861 2.4e-83 313.2 332 53.9
AUR62022761 Chenopodium quinoa HOM05D005332 ORTHO05D006861 6.5e-81 305.1 237 65.0
RcHm_v2.0_Chr0c39g0503211 Rosa chinensis HOM05D005332 ORTHO05D006861 1.3e-76 290.8 239 66.5
RcHm_v2.0_Chr0c39g0503281 Rosa chinensis HOM05D005332 ORTHO05D006861 4.8e-76 288.9 242 67.8
AagrBONN_evm.TU.Sc2ySwM_117.1953 Anthoceros agrestis HOM05D005332 ORTHO05D006861 9.4e-72 274.6 306 47.7
Psat4g153040 Pisum sativum HOM05D005332 ORTHO05D006861 2.4e-67 260.0 191 66.5
MBI18_g10614_MAGBIO Magnolia biondii HOM05D005332 ORTHO05D006861 4.5e-66 255.8 192 67.7
MD01G1052200 Malus domestica HOM05D005332 ORTHO05D006861 2.2e-57 226.9 181 67.4
Glyma.03G015066 Glycine max HOM05D005332 ORTHO05D006861 1.1e-51 208.0 131 77.9
MCO04G198 Micromonas commoda HOM05D005332 ORTHO05D006861 1.5e-48 197.6 324 39.5
PRCOL_00000453 Prasinoderma coloniale HOM05D005332 ORTHO05D006861 2.5e-48 196.8 315 40.6
CAN.G960.12 Capsicum annuum HOM05D005332 ORTHO05D006861 9.5e-40 168.3 183 53.0
Cre17.g718250 Chlamydomonas reinhardtii HOM05D005332 ORTHO05D006861 4.4e-37 159.5 323 36.8
RcHm_v2.0_Chr1g0353211 Rosa chinensis HOM05D005332 ORTHO05D006861 1.4e-35 154.5 108 75.9
SEGI_30707 Sequoiadendron giganteum HOM05D005332 ORTHO05D006861 5.4e-35 152.5 124 61.3
QL02p088489 Quercus lobata HOM05D005332 ORTHO05D006861 7.8e-34 148.7 112 66.1
QL03p011361 Quercus lobata HOM05D005332 ORTHO05D006861 7.8e-34 148.7 112 66.1
QL07p038896 Quercus lobata HOM05D005332 ORTHO05D006861 7.8e-34 148.7 112 66.1
QL02p088470 Quercus lobata HOM05D005332 ORTHO05D006861 3.3e-32 143.3 117 65.8
MD01G1052100 Malus domestica HOM05D005332 ORTHO05D006861 2.6e-29 133.7 126 58.7
arahy.Tifrunner.gnm1.ann1.FSVT9P Arachis hypogaea HOM05D005332 ORTHO05D006861 4.1e-27 126.3 90 67.8
arahy.Tifrunner.gnm1.ann1.F84KN2 Arachis hypogaea HOM05D005332 ORTHO05D006861 7.0e-27 125.6 82 70.7
RcHm_v2.0_Chr1g0353261 Rosa chinensis HOM05D005277 ORTHO05D006319 7.3e-24 115.5 83 74.7
Psat4g153000 Pisum sativum HOM05D005332 ORTHO05D006861 1.6e-23 114.4 77 77.9
RcHm_v2.0_Chr1g0353321 Rosa chinensis HOM05D005332 ORTHO05D006861 6.8e-14 82.4 76 53.9
RcHm_v2.0_Chr3g0477641 Rosa chinensis HOM05D005332 ORTHO05D006861 2.6e-13 80.5 54 68.5
arahy.Tifrunner.gnm1.ann1.6Z7PRK Arachis hypogaea HOM05D005332 ORTHO05D006861 8.4e-12 75.5 57 59.6
Glyma.03G015132 Glycine max HOM05D005332 ORTHO05D006861 1.0e-09 68.6 86 48.8
RcHm_v2.0_Chr0c39g0503291 Rosa chinensis HOM05D005332 ORTHO05D006861 5.6e-08 62.8 61 54.1
RcHm_v2.0_Chr1g0353131 Rosa chinensis HOM05D005332 ORTHO05D006861 5.6e-08 62.8 61 54.1
arahy.Tifrunner.gnm1.ann1.SQV5XE Arachis hypogaea HOM05D005332 ORTHO05D004201 1.1e-06 58.5 44 65.9


User provided reference genes

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