Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.014G078300 Populus trichocarpa HOM05D004815 ORTHO05D005742 8.0e-205 716.8 358 100.0
Sabra14G0053800 Salix brachista HOM05D004815 ORTHO05D005742 2.6e-187 658.7 366 91.3
Potri.002G152300 Populus trichocarpa HOM05D004815 ORTHO05D005742 1.4e-180 636.3 364 88.5
Manes.05G040900 Manihot esculenta HOM05D004815 ORTHO05D005742 4.6e-160 568.2 370 78.1
Manes.01G263200 Manihot esculenta HOM05D004815 ORTHO05D005742 3.3e-158 562.0 370 78.4
CiPaw.01G257600 Carya illinoinensis HOM05D004815 ORTHO05D005742 7.4e-158 560.8 370 75.4
Sabra02G0120600 Salix brachista HOM05D004815 ORTHO05D005742 2.6e-155 552.4 364 78.6
Thecc.01G370200 Theobroma cacao HOM05D004815 ORTHO05D005742 8.4e-154 547.4 368 76.1
Haze_16704 Corylus avellana HOM05D004815 ORTHO05D005742 1.4e-153 546.6 370 74.9
Gohir.A07G144600 Gossypium hirsutum HOM05D004815 ORTHO05D005742 1.4e-153 546.6 371 74.1
GSVIVG01027589001 Vitis vinifera HOM05D004815 ORTHO05D005742 1.4e-153 546.6 370 73.5
Gorai.001G172600 Gossypium raimondii HOM05D004815 ORTHO05D005742 2.1e-152 542.7 371 74.4
Cfa001810 Carpinus fangiana HOM05D004815 ORTHO05D005742 7.9e-152 540.8 372 73.9
Gohir.D07G150500 Gossypium hirsutum HOM05D004815 ORTHO05D005742 7.9e-152 540.8 371 74.1
Atru.chr5.381_Atru.chr5.382 Acer truncatum HOM05D004815 ORTHO05D005742 2.3e-151 539.3 364 76.4
MD02G1195800 Malus domestica HOM05D004815 ORTHO05D005742 3.0e-151 538.9 370 72.2
TWI59G0538 Tripterygium wilfordii HOM05D004815 ORTHO05D005742 5.1e-151 538.1 370 74.1
Ciclev10020702m.g Citrus clementina HOM05D004815 ORTHO05D005742 1.9e-150 536.2 370 74.6
Duzib133G0793 Durio zibethinus HOM05D004815 ORTHO05D005742 3.3e-150 535.4 372 73.7
TWI23G0970 Tripterygium wilfordii HOM05D004815 ORTHO05D005742 1.1e-148 530.4 364 73.6
TAR629G0568 Trochodendron aralioides HOM05D004815 ORTHO05D005742 1.8e-148 529.6 371 72.8
Cpa.g.sc18.178 Carica papaya HOM05D004815 ORTHO05D005742 5.3e-148 528.1 369 73.2
RcHm_v2.0_Chr1g0351921 Rosa chinensis HOM05D004815 ORTHO05D005742 7.6e-147 524.2 370 70.8
MELO3C022521.2 Cucumis melo HOM05D004815 ORTHO05D005742 2.5e-145 519.2 370 69.7
CsaV3_6G005940 Cucumis sativus L. HOM05D004815 ORTHO05D005742 2.7e-144 515.8 370 69.7
Lj3g0020425 Lotus japonicus HOM05D004815 ORTHO05D005742 4.6e-144 515.0 368 72.0
Actinidia31455 Actinidia chinensis HOM05D004815 ORTHO05D005742 1.0e-143 513.8 375 69.1
Medtr8g033040 Medicago truncatula HOM05D004815 ORTHO05D005742 1.0e-143 513.8 364 71.7
Ca_23774_v3 Cicer arietinum L. HOM05D004815 ORTHO05D005742 3.3e-142 508.8 364 70.6
Glyma.03G018700 Glycine max HOM05D004815 ORTHO05D005742 3.3e-142 508.8 370 70.3
PGR031G2979 Punica granatum HOM05D004815 ORTHO05D005742 9.7e-142 507.3 364 68.4
TPR.G17395 Trifolium pratense HOM05D004815 ORTHO05D005742 1.3e-141 506.9 365 71.8
CANSAT56G0719 Cannabis sativa HOM05D004815 ORTHO05D005742 1.4e-140 503.4 370 69.2
FAN01G1324 Fragaria x ananassa HOM05D004815 ORTHO05D005742 6.9e-140 501.1 370 67.6
Lj7C524T7 Lonicera japonica HOM05D004815 ORTHO05D005742 9.0e-140 500.7 364 69.5
TPR.G17590 Trifolium pratense HOM05D004815 ORTHO05D005742 1.3e-138 496.9 363 70.5
FAN10G2694 Fragaria x ananassa HOM05D004815 ORTHO05D005742 2.2e-138 496.1 370 67.0
Lalb_Chr17g0340041 Lupinus albus HOM05D004815 ORTHO05D005742 2.9e-138 495.7 370 67.8
TAR636G2513 Trochodendron aralioides HOM05D004815 ORTHO05D005742 2.9e-138 495.7 370 68.9
Cc02_g37080 Coffea canephora HOM05D004815 ORTHO05D005742 3.8e-138 495.4 367 68.4
Cc09_g02920 Coffea canephora HOM05D004815 ORTHO05D005742 5.0e-138 495.0 366 69.4
VMungo0331G0142 Vigna mungo HOM05D004815 ORTHO05D005742 1.1e-137 493.8 367 68.9
arahy.Tifrunner.gnm1.ann1.GZV6IQ Arachis hypogaea HOM05D004815 ORTHO05D005742 5.5e-137 491.5 370 68.1
arahy.Tifrunner.gnm1.ann1.32Q5MD Arachis hypogaea HOM05D004815 ORTHO05D005742 2.7e-136 489.2 370 68.4
Sed0027777 Sechium edule HOM05D004815 ORTHO05D005742 2.3e-135 486.1 372 67.2
Aqoxy7G00483 Aquilegia oxysepala HOM05D004815 ORTHO05D005742 3.7e-133 478.8 368 68.8
Lalb_Chr10g0097591 Lupinus albus HOM05D004815 ORTHO05D005742 6.3e-133 478.0 370 66.2
FAN06G3277 Fragaria x ananassa HOM05D004815 ORTHO05D005742 3.1e-132 475.7 367 65.4
FAN06G3416 Fragaria x ananassa HOM05D004815 ORTHO05D005742 3.1e-132 475.7 367 65.4
EL10Ac1g00976 Beta vulgaris HOM05D004815 ORTHO05D005742 5.3e-132 474.9 373 65.1
Rhsim07G0022400 Rhododendron simsii HOM05D004815 ORTHO05D005742 3.4e-131 472.2 362 67.1
AUR62033376 Chenopodium quinoa HOM05D004815 ORTHO05D005742 1.7e-130 469.9 371 65.2
Glyma.07G080200 Glycine max HOM05D004815 ORTHO05D005742 1.7e-130 469.9 353 68.8
SGA_v2.0_scaffold153G37057 Striga asiatica HOM05D004815 ORTHO05D005742 8.5e-130 467.6 362 65.2
ClCG06G000170 Citrullus lanatus HOM05D004815 ORTHO05D005742 7.2e-129 464.5 370 64.9
Duzib138G1778 Durio zibethinus HOM05D004815 ORTHO05D005742 7.9e-128 461.1 340 70.6
Psat4g200880 Pisum sativum HOM05D004815 ORTHO05D005742 7.9e-128 461.1 346 68.8
Aa31LG1G27160 Aethionema arabicum HOM05D004815 ORTHO05D005742 5.1e-127 458.4 372 65.3
PGSC0003DMG400000005 Solanum tuberosum HOM05D004815 ORTHO05D005742 6.7e-127 458.0 370 61.6
Migut.B01673 Erythranthe guttata HOM05D004815 ORTHO05D005742 1.1e-126 457.2 360 65.3
Phvul.010G089200 Phaseolus vulgaris HOM05D004815 ORTHO05D005742 1.1e-126 457.2 344 68.9
Solyc01g091900.3 Solanum lycopersicum HOM05D004815 ORTHO05D005742 2.6e-126 456.1 370 61.4
MBI04_g28567_MAGBIO Magnolia biondii HOM05D004815 ORTHO05D005742 4.4e-126 455.3 360 66.1
Carub.0004s2834 Capsella rubella HOM05D004815 ORTHO05D005742 4.8e-125 451.8 376 64.6
Nitab4.5_0013229g0020 Nicotiana tabacum HOM05D004815 ORTHO05D005742 4.8e-125 451.8 370 60.8
SalBow7G0216 Salvia bowleyana HOM05D004815 ORTHO05D005742 4.8e-125 451.8 411 58.6
vmacro13348 Vaccinium macrocarpon HOM05D004815 ORTHO05D005742 1.8e-124 449.9 396 60.9
Sp4g27730 Schrenkiella parvula HOM05D004815 ORTHO05D005742 2.4e-124 449.5 376 63.6
CAN.G170.62 Capsicum annuum HOM05D004815 ORTHO05D005742 5.3e-124 448.4 369 60.4
Sc02g0002260 Simmondsia chinensis HOM05D004815 ORTHO05D005742 6.9e-124 448.0 350 65.4
Lalb_Chr19g0127171 Lupinus albus HOM05D004815 ORTHO05D005742 2.0e-123 446.4 375 63.7
QL08p050919 Quercus lobata HOM05D004815 ORTHO05D005742 2.6e-123 446.0 326 69.3
MSTRG.20784 Avicennia marina HOM05D004815 ORTHO05D005742 5.9e-123 444.9 369 62.9
A05p05650 Brassica napus HOM05D004815 ORTHO05D005742 5.9e-123 444.9 370 61.9
BraA05t19537Z Brassica rapa HOM05D004815 ORTHO05D005742 1.0e-122 444.1 370 61.9
Thhalv10001499m.g Eutrema salsugineum HOM05D004815 ORTHO05D005742 1.0e-122 444.1 369 62.9
PSO478G4379 Papaver somniferum HOM05D004815 ORTHO05D005742 1.0e-122 444.1 368 63.0
BcaB01g03258 Brassica carinata HOM05D004815 ORTHO05D005742 2.2e-122 443.0 367 62.7
ECA236G5005 Erigeron canadensis HOM05D004815 ORTHO05D005742 3.8e-122 442.2 365 64.4
PSO782G2788 Papaver somniferum HOM05D004815 ORTHO05D005742 5.0e-122 441.8 368 62.8
AL4G44860 Arabidopsis lyrata HOM05D004815 ORTHO05D005742 1.9e-121 439.9 370 62.7
A03p25310 Brassica napus HOM05D004815 ORTHO05D005742 2.5e-121 439.5 367 62.4
BcaC02g12192 Brassica carinata HOM05D004815 ORTHO05D005742 5.5e-121 438.3 370 61.6
AT2G45690 Arabidopsis thaliana HOM05D004815 ORTHO05D005742 7.2e-121 438.0 369 61.8
Hund27330 Selenicereus undatus HOM05D004815 ORTHO05D005742 2.1e-120 436.4 378 61.4
BolC4t22283H Brassica oleracea HOM05D004815 ORTHO05D005742 4.7e-120 435.3 370 61.1
DCAR_006900 Daucus carota HOM05D004815 ORTHO05D005742 4.7e-120 435.3 341 66.9
BcaC01g05112 Brassica carinata HOM05D004815 ORTHO05D005742 1.4e-119 433.7 373 61.4
BcaB02g09018 Brassica carinata HOM05D004815 ORTHO05D005742 1.8e-119 433.3 382 61.8
C03p30200 Brassica napus HOM05D004815 ORTHO05D005742 1.8e-119 433.3 372 61.6
BolC3t15369H Brassica oleracea HOM05D004815 ORTHO05D005742 3.9e-119 432.2 372 61.6
Oeu059223.1 Olea europaea HOM05D003859 ORTHO05D004927 1.1e-118 430.6 369 62.6
Prupe.2G152800 Prunus persica HOM05D004815 ORTHO05D005742 8.2e-117 424.5 294 72.8
Ciclev10023945m.g Citrus clementina HOM05D004815 ORTHO05D005742 1.8e-116 423.3 364 62.9
BraA03t11735Z Brassica rapa HOM05D004815 ORTHO05D005742 2.4e-116 422.9 370 60.8
FvH4_7g12840 Fragaria vesca HOM05D004815 ORTHO05D005742 5.3e-116 421.8 329 64.7
HanXRQChr06g0169351 Helianthus annuus HOM05D004815 ORTHO05D005742 1.6e-115 420.2 362 61.3
Actinidia09581 Actinidia chinensis HOM05D004815 ORTHO05D005742 2.0e-115 419.9 321 64.8
Lsat_1_v5_gn_7_8041 Lactuca sativa HOM05D004815 ORTHO05D005742 2.6e-115 419.5 343 63.8
Peaxi162Scf00021g00232 Petunia axillaris HOM05D004815 ORTHO05D005742 7.7e-115 417.9 345 61.4
HanXRQChr04g0121731 Helianthus annuus HOM05D004815 ORTHO05D005742 5.0e-114 415.2 346 63.9
Nn1g01309 Nelumbo nucifera HOM05D004815 ORTHO05D005742 4.2e-113 412.1 326 65.6
unitig_749.g14360 Utricularia gibba HOM05D003518 ORTHO05D005164 1.0e-111 407.5 346 62.4
C04p06610 Brassica napus HOM05D004815 ORTHO05D005742 1.2e-110 404.1 349 60.2
Sed0004795 Sechium edule HOM05D004815 ORTHO05D005742 5.3e-108 395.2 306 66.0
HPP92_004960 Vanilla planifolia HOM05D004815 ORTHO05D005742 1.2e-107 394.0 373 56.0
AUR62004281 Chenopodium quinoa HOM05D004815 ORTHO05D005742 3.5e-107 392.5 371 56.9
Ah.15g094120 Amaranthus hybridus HOM05D001215 ORTHO05D001387 6.5e-106 388.3 382 55.2
THA.LOC104817269 Tarenaya hassleriana HOM05D004815 ORTHO05D005742 4.2e-105 385.6 332 61.4
MD02G1195700 Malus domestica HOM05D004815 ORTHO05D005742 4.7e-104 382.1 335 60.3
Sopen06g030930 Solanum pennellii HOM05D004815 ORTHO05D005742 6.1e-104 381.7 370 52.4
Solyc06g074460.4 Solanum lycopersicum HOM05D004815 ORTHO05D005742 6.8e-103 378.3 370 51.6
CAN.G919.13 Capsicum annuum HOM05D004815 ORTHO05D005742 8.8e-103 377.9 370 52.2
Lalb_Chr01g0021231 Lupinus albus HOM05D004815 ORTHO05D005742 6.3e-101 371.7 382 53.7
Zm00001eb208530 Zea mays HOM05D004815 ORTHO05D005742 6.3e-101 371.7 379 53.0
Sopen01g037670 Solanum pennellii HOM05D004815 ORTHO05D005742 1.8e-100 370.2 322 59.0
Nitab4.5_0001901g0030 Nicotiana tabacum HOM05D004815 ORTHO05D005742 1.6e-99 367.1 367 51.2
Nitab4.5_0005459g0020 Nicotiana tabacum HOM05D004815 ORTHO05D005742 1.1e-97 360.9 391 50.1
Peaxi162Scf00114g00211 Petunia axillaris HOM05D004815 ORTHO05D005742 3.4e-94 349.4 346 52.0
SHI13492 Sapria himalayana HOM05D004815 ORTHO05D005742 1.5e-89 334.0 473 43.8
COL.COLO4_12639 Corchorus olitorius HOM05D004815 ORTHO05D005742 1.7e-85 320.5 240 67.9
Nitab4.5_0001127g0010 Nicotiana tabacum HOM05D004815 ORTHO05D005742 1.7e-85 320.5 376 48.7
Dinv43746 Davidia involucrata HOM05D004815 ORTHO05D005742 4.9e-85 318.9 283 60.4
Os02g0123200 Oryza sativa ssp. japonica HOM05D004815 ORTHO05D005742 1.6e-83 313.9 340 50.3
SEGI_15318 Sequoiadendron giganteum HOM05D004815 ORTHO05D005742 2.0e-83 313.5 378 45.8
CARHR140910 Cardamine hirsuta HOM05D004815 ORTHO05D005742 7.8e-83 311.6 291 58.1
CSS0047010 Camellia sinensis var. sinensis HOM05D004815 ORTHO05D005742 8.0e-80 301.6 273 59.3
Eucgr.D02393 Eucalyptus grandis HOM05D004815 ORTHO05D005742 8.9e-79 298.1 241 66.4
CSS0023679 Camellia sinensis var. sinensis HOM05D004815 ORTHO05D005742 2.9e-77 293.1 287 56.1
Mapoly0047s0037 Marchantia polymorpha HOM05D004815 ORTHO05D005742 4.6e-75 285.8 409 39.6
Dinv32412 Davidia involucrata HOM05D004815 ORTHO05D005742 5.0e-74 282.3 259 59.8
SMO147G0187 Selaginella moellendorffii HOM05D004815 ORTHO05D005742 1.7e-69 267.3 379 39.8
AagrBONN_evm.TU.Sc2ySwM_228.5506 Anthoceros agrestis HOM05D004815 ORTHO05D005742 8.6e-66 255.0 386 39.1
Eucgr.D02410 Eucalyptus grandis HOM05D004815 ORTHO05D005742 3.3e-65 253.1 235 60.4
ATR0757G223 Amborella trichopoda HOM05D004815 ORTHO05D005742 4.3e-65 252.7 231 57.6
Gohir.A11G084200 Gossypium hirsutum HOM05D004815 ORTHO05D005742 3.6e-64 249.6 249 57.0
Pp3c20_6130 Physcomitrium patens HOM05D004815 ORTHO05D005742 3.9e-58 229.6 333 40.2
Eucgr.D02397 Eucalyptus grandis HOM05D004815 ORTHO05D005742 2.4e-55 220.3 216 58.3
CDE11G0368 Ceratophyllum demersum HOM05D004815 ORTHO05D005742 1.2e-54 218.0 213 53.5
PGSC0003DMG400007146 Solanum tuberosum HOM05D004815 ORTHO05D005742 1.2e-54 218.0 260 46.5
AagrBONN_evm.TU.Sc2ySwM_369.172 Anthoceros agrestis HOM05D004815 ORTHO05D005742 2.0e-54 217.2 377 35.8
ATR0757G181 Amborella trichopoda HOM05D004815 ORTHO05D005742 6.2e-48 195.7 146 64.4
FAN10G0991 Fragaria x ananassa HOM05D004815 ORTHO05D005742 2.6e-46 190.3 115 74.8
CDE11G0585 Ceratophyllum demersum HOM05D004815 ORTHO05D005742 8.4e-45 185.3 137 65.0
Aa31LG6G10720 Aethionema arabicum HOM05D004815 ORTHO05D005742 3.2e-28 130.2 139 56.8
Glyma.04G148600 Glycine max HOM05D004815 ORTHO05D005742 2.7e-27 127.1 74 78.4
PRCOL_00005618 Prasinoderma coloniale HOM05D004815 ORTHO05D005742 2.6e-22 110.5 427 24.8
CBR_g3181 Chara braunii HOM05D004815 ORTHO05D005742 8.5e-21 105.5 200 31.0
Aa31sc1021G10 Aethionema arabicum HOM05D004815 ORTHO05D005742 2.5e-20 104.0 120 49.2
COL.COLO4_24134 Corchorus olitorius HOM05D000638 ORTHO05D000801 8.8e-18 95.5 73 67.1
Lj3g0018651 Lotus japonicus HOM05D004815 ORTHO05D005742 1.7e-13 81.3 42 90.5
MBI11_g13051_MAGBIO Magnolia biondii HOM05D004815 ORTHO05D005742 1.1e-09 68.6 77 50.6
Hund16967 Selenicereus undatus HOM05D004815 ORTHO05D005742 5.7e-09 66.2 89 46.1
RcHm_v2.0_Chr1g0351871 Rosa chinensis HOM05D004815 ORTHO05D005742 3.7e-08 63.5 50 60.0
C07p07230 Brassica napus HOM05D004815 ORTHO05D005742 4.1e-07 60.1 57 49.1


User provided reference genes

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