Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.014G071400 Populus trichocarpa HOM05D004001 ORTHO05D004559 0.0e+00 1586.6 899 100.0
Sabra14G0050700 Salix brachista HOM05D004001 ORTHO05D004559 0.0e+00 1324.7 905 86.7
Dinv32391 Davidia involucrata HOM05D004001 ORTHO05D004559 4.5e-273 944.9 911 62.1
Actinidia12272 Actinidia chinensis HOM05D004001 ORTHO05D004559 8.0e-270 934.1 919 59.4
Manes.05G044000 Manihot esculenta HOM05D004001 ORTHO05D004559 3.7e-267 925.2 834 65.2
Actinidia31422 Actinidia chinensis HOM05D004001 ORTHO05D004559 3.4e-260 902.1 898 58.8
Thecc.01G374400 Theobroma cacao HOM05D004001 ORTHO05D004559 1.7e-259 899.8 906 61.9
Atru.chr5.325 Acer truncatum HOM05D004001 ORTHO05D004559 4.9e-259 898.3 873 59.9
Duzib138G1007 Durio zibethinus HOM05D004001 ORTHO05D004559 6.0e-257 891.3 908 63.8
Haze_16831 Corylus avellana HOM05D004001 ORTHO05D004559 1.9e-255 886.3 901 61.0
QL08p051978 Quercus lobata HOM05D004001 ORTHO05D004559 4.4e-252 875.2 900 59.4
Cfa001702 Carpinus fangiana HOM05D004001 ORTHO05D004559 3.7e-251 872.1 904 61.1
CiPaw.01G260600 Carya illinoinensis HOM05D004001 ORTHO05D004559 2.3e-248 862.8 853 59.8
TAR629G2254 Trochodendron aralioides HOM05D004001 ORTHO05D004559 4.3e-247 858.6 923 58.0
Gorai.007G092200 Gossypium raimondii HOM05D004001 ORTHO05D004559 1.2e-246 857.1 909 60.1
TWI14G1161 Tripterygium wilfordii HOM05D004001 ORTHO05D004559 1.4e-245 853.6 903 57.7
TAR636G3381 Trochodendron aralioides HOM05D004001 ORTHO05D004559 8.7e-240 834.3 912 56.9
CANSAT56G0321 Cannabis sativa HOM05D004001 ORTHO05D004559 3.1e-237 825.9 906 57.0
Solyc01g091500.3 Solanum lycopersicum HOM05D004001 ORTHO05D004559 1.7e-235 820.1 944 55.4
Sopen01g037250 Solanum pennellii HOM05D004001 ORTHO05D004559 1.2e-233 813.9 948 55.2
arahy.Tifrunner.gnm1.ann1.0Y1PWL Arachis hypogaea HOM05D004001 ORTHO05D004559 1.7e-232 810.1 904 55.4
Gorai.008G114700 Gossypium raimondii HOM05D004001 ORTHO05D004559 3.0e-232 809.3 901 59.7
Rhsim07G0025900 Rhododendron simsii HOM05D004001 ORTHO05D004559 3.9e-232 808.9 795 60.3
Gohir.D11G086300 Gossypium hirsutum HOM05D004001 ORTHO05D004559 5.6e-231 805.1 909 55.4
Rhsim07G0026000 Rhododendron simsii HOM05D004001 ORTHO05D004559 9.6e-231 804.3 817 58.5
Lalb_Chr07g0189651 Lupinus albus HOM05D004001 ORTHO05D004559 1.8e-229 800.0 866 54.8
PGSC0003DMG400012752 Solanum tuberosum HOM05D004001 ORTHO05D004559 6.9e-229 798.1 954 54.6
MD02G1201400 Malus domestica HOM05D004001 ORTHO05D004559 2.9e-227 792.7 891 55.1
Eucgr.E01409 Eucalyptus grandis HOM05D004001 ORTHO05D004559 8.4e-227 791.2 868 55.0
arahy.Tifrunner.gnm1.ann1.EYC1DY Arachis hypogaea HOM05D004001 ORTHO05D004559 5.4e-226 788.5 905 55.8
arahy.Tifrunner.gnm1.ann1.9J1L2I Arachis hypogaea HOM05D004001 ORTHO05D004559 1.3e-224 783.9 865 56.9
Nitab4.5_0004320g0020 Nicotiana tabacum HOM05D004001 ORTHO05D004559 6.7e-224 781.6 952 55.1
GSVIVG01027630001 Vitis vinifera HOM05D004001 ORTHO05D004559 3.3e-223 779.2 906 54.9
CsaV3_3G009550 Cucumis sativus L. HOM05D004001 ORTHO05D004559 4.3e-223 778.9 881 53.9
FAN06G2206 Fragaria x ananassa HOM05D004001 ORTHO05D004559 9.6e-223 777.7 891 55.0
Lalb_Chr12g0208391 Lupinus albus HOM05D004001 ORTHO05D004559 1.6e-222 776.9 865 54.6
Lalb_Chr12g0208441 Lupinus albus HOM05D004001 ORTHO05D004559 1.6e-222 776.9 865 54.6
Glyma.09G268000 Glycine max HOM05D004001 ORTHO05D004559 2.1e-222 776.5 868 58.4
Nitab4.5_0010473g0020 Nicotiana tabacum HOM05D004001 ORTHO05D004559 2.8e-222 776.2 932 53.3
COL.COLO4_12572 Corchorus olitorius HOM05D004001 ORTHO05D004559 1.8e-221 773.5 798 60.7
FAN10G1690 Fragaria x ananassa HOM05D004001 ORTHO05D004559 1.8e-221 773.5 866 55.7
FAN10G1409 Fragaria x ananassa HOM05D004001 ORTHO05D004559 6.9e-221 771.5 891 54.8
RcHm_v2.0_Chr1g0350831 Rosa chinensis HOM05D004001 ORTHO05D004559 1.5e-220 770.4 895 54.3
Glyma.18G221900 Glycine max HOM05D004001 ORTHO05D004559 3.4e-220 769.2 843 55.8
FAN06G4715 Fragaria x ananassa HOM05D004001 ORTHO05D004559 7.6e-220 768.1 891 54.5
FvH4_7g12090 Fragaria vesca HOM05D004001 ORTHO05D004559 1.3e-219 767.3 891 54.5
Gohir.D12G105400 Gossypium hirsutum HOM05D004001 ORTHO05D004559 1.1e-215 754.2 900 56.0
MSTRG.20759 Avicennia marina HOM05D004001 ORTHO05D004559 1.3e-214 750.7 965 50.9
CAN.G170.4 Capsicum annuum HOM05D004001 ORTHO05D004559 4.8e-214 748.8 944 53.6
arahy.Tifrunner.gnm1.ann1.2UV9R4 Arachis hypogaea HOM05D004001 ORTHO05D004559 1.4e-213 747.3 888 52.1
Cc02_g36540 Coffea canephora HOM05D004001 ORTHO05D004559 6.9e-213 745.0 944 50.5
Lj1g0027935 Lotus japonicus HOM05D004001 ORTHO05D004559 2.2e-211 740.0 859 53.6
Ciclev10018784m.g Citrus clementina HOM05D004001 ORTHO05D004559 4.9e-211 738.8 867 54.8
Phvul.008G075200 Phaseolus vulgaris HOM05D004001 ORTHO05D004559 8.4e-211 738.0 874 56.2
SalBow5G4135 Salvia bowleyana HOM05D004001 ORTHO05D004559 8.4e-211 738.0 906 51.9
arahy.Tifrunner.gnm1.ann1.CI1NNE Arachis hypogaea HOM05D004001 ORTHO05D004559 3.2e-210 736.1 904 51.9
ClCG05G002120 Citrullus lanatus HOM05D004001 ORTHO05D004559 7.1e-210 734.9 970 49.3
Nn4g26437 Nelumbo nucifera HOM05D004001 ORTHO05D004559 2.7e-209 733.0 911 54.7
Prupe.2G147400 Prunus persica HOM05D004001 ORTHO05D004559 7.9e-209 731.5 765 57.1
arahy.Tifrunner.gnm1.ann1.H5PXMS Arachis hypogaea HOM05D004001 ORTHO05D004559 5.1e-208 728.8 880 51.9
AUR62013619 Chenopodium quinoa HOM05D004001 ORTHO05D004559 4.5e-204 715.7 867 54.2
Hund17008 Selenicereus undatus HOM05D004001 ORTHO05D004559 7.7e-204 714.9 978 50.7
Lj9C572T3 Lonicera japonica HOM05D004001 ORTHO05D004559 2.9e-203 713.0 902 51.9
FAN03G0266 Fragaria x ananassa HOM05D004001 ORTHO05D004559 3.8e-203 712.6 894 51.9
EL10Ac1g00911 Beta vulgaris HOM05D004001 ORTHO05D004559 6.5e-203 711.8 915 49.4
PSO478G3708 Papaver somniferum HOM05D004001 ORTHO05D004559 8.5e-203 711.4 878 50.9
Peaxi162Scf00021g01316 Petunia axillaris HOM05D004001 ORTHO05D004559 1.0e-200 704.5 925 53.9
Sc26g0001190 Simmondsia chinensis HOM05D004001 ORTHO05D004559 6.7e-200 701.8 897 50.7
vmacro13388 Vaccinium macrocarpon HOM05D004001 ORTHO05D004559 5.7e-199 698.7 744 59.7
Aqoxy7G00586 Aquilegia oxysepala HOM05D004001 ORTHO05D004559 6.3e-198 695.3 866 50.1
Medtr7g075140 Medicago truncatula HOM05D004001 ORTHO05D004559 5.3e-197 692.2 898 50.7
Ca_07831_v3 Cicer arietinum L. HOM05D004001 ORTHO05D004559 5.9e-196 688.7 884 50.9
Gohir.A12G102200 Gossypium hirsutum HOM05D004001 ORTHO05D004559 1.0e-195 688.0 906 50.9
PSO782G3046 Papaver somniferum HOM05D004001 ORTHO05D004559 1.7e-195 687.2 861 50.2
Psat3g115320 Pisum sativum HOM05D004001 ORTHO05D004559 2.9e-195 686.4 879 51.8
AUR62004229 Chenopodium quinoa HOM05D004001 ORTHO05D004559 4.7e-193 679.1 909 51.6
Lj7C526G13 Lonicera japonica HOM05D004001 ORTHO05D004559 3.3e-191 672.9 909 49.0
arahy.Tifrunner.gnm1.ann1.JKPH3R Arachis hypogaea HOM05D004001 ORTHO05D004559 7.0e-189 665.2 818 52.6
Oeu037907.1 Olea europaea HOM05D004001 ORTHO05D004559 6.5e-179 632.1 885 47.3
Migut.B01647 Erythranthe guttata HOM05D004001 ORTHO05D004559 1.1e-178 631.3 920 47.5
BcaB02g08998 Brassica carinata HOM05D004001 ORTHO05D004559 1.9e-178 630.6 879 47.9
BolC4t22266H Brassica oleracea HOM05D004001 ORTHO05D004559 2.7e-177 626.7 891 49.8
HanXRQChr03g0093811 Helianthus annuus HOM05D004001 ORTHO05D004559 9.7e-175 618.2 871 47.3
AL4G44630 Arabidopsis lyrata HOM05D004001 ORTHO05D004559 1.7e-174 617.5 910 45.2
Sed0014964 Sechium edule HOM05D004001 ORTHO05D004559 4.8e-174 615.9 772 51.7
C04p06430 Brassica napus HOM05D004001 ORTHO05D004559 2.4e-173 613.6 875 49.4
Thhalv10001303m.g Eutrema salsugineum HOM05D004001 ORTHO05D004559 7.0e-173 612.1 854 49.6
BcaC02g12205 Brassica carinata HOM05D004001 ORTHO05D004559 1.2e-172 611.3 876 49.2
AT2G45460 Arabidopsis thaliana HOM05D004001 ORTHO05D004559 1.0e-171 608.2 896 45.5
BraA05t19519Z Brassica rapa HOM05D004001 ORTHO05D004559 2.2e-171 607.1 879 48.8
MELO3C006177.2 Cucumis melo HOM05D004001 ORTHO05D004559 5.0e-171 605.9 881 47.0
A05p05490 Brassica napus HOM05D004001 ORTHO05D004559 1.9e-170 604.0 864 48.8
CARHR140650 Cardamine hirsuta HOM05D004001 ORTHO05D004559 2.1e-169 600.5 905 45.9
Carub.0004s2807 Capsella rubella HOM05D004001 ORTHO05D004559 4.7e-169 599.4 891 47.7
Sp4g27490 Schrenkiella parvula HOM05D004001 ORTHO05D004559 5.2e-168 595.9 910 45.6
CDE04G0282 Ceratophyllum demersum HOM05D004001 ORTHO05D004559 1.5e-167 594.3 768 48.2
PGR042G2753 Punica granatum HOM05D004001 ORTHO05D004559 2.2e-166 590.5 939 43.9
unitig_8.g3817 Utricularia gibba HOM05D004001 ORTHO05D004559 5.9e-164 582.4 882 45.4
Aa31LG1G26960 Aethionema arabicum HOM05D004001 ORTHO05D004559 8.6e-163 578.6 853 44.0
TPR.G26922 Trifolium pratense HOM05D004001 ORTHO05D004559 2.3e-160 570.5 827 46.9
Ah.16g103740 Amaranthus hybridus HOM05D004001 ORTHO05D004559 2.6e-159 567.0 856 50.6
SGA_v2.0_scaffold95G28893 Striga asiatica HOM05D004001 ORTHO05D004559 1.7e-158 564.3 913 44.1
Gohir.A11G081700 Gossypium hirsutum HOM05D004001 ORTHO05D004559 1.2e-156 558.1 907 43.1
Os03g0127600 Oryza sativa ssp. japonica HOM05D004001 ORTHO05D004559 7.3e-154 548.9 897 42.8
ECA240G2591 Erigeron canadensis HOM05D004001 ORTHO05D004559 1.8e-152 544.3 819 44.4
Lsat_1_v5_gn_3_133301 Lactuca sativa HOM05D004001 ORTHO05D004559 4.4e-151 539.7 910 42.4
SHI13515 Sapria himalayana HOM05D004001 ORTHO05D004559 4.9e-150 536.2 535 59.3
SGA_v2.0_scaffold153G37027 Striga asiatica HOM05D004001 ORTHO05D001724 1.2e-143 515.0 909 42.7
CSS0038978 Camellia sinensis var. sinensis HOM05D004001 ORTHO05D004559 6.4e-142 509.2 492 58.7
MBI11_g23939_MAGBIO Magnolia biondii HOM05D004001 ORTHO05D004559 6.6e-139 499.2 737 47.4
Zm00001eb403560 Zea mays HOM05D004001 ORTHO05D004559 7.1e-133 479.2 885 40.2
ATR0757G164 Amborella trichopoda HOM05D004001 ORTHO05D004559 1.5e-114 418.3 906 37.4
Zm00001eb002020 Zea mays HOM05D004001 ORTHO05D004559 3.4e-103 380.6 847 35.9
CSS0022656 Camellia sinensis var. sinensis HOM05D004001 ORTHO05D004559 3.5e-100 370.5 438 55.0
HPP92_018394 Vanilla planifolia HOM05D004001 ORTHO05D004559 6.9e-96 356.3 588 43.9
SEGI_05063 Sequoiadendron giganteum HOM05D004001 ORTHO05D004559 1.3e-91 342.0 895 34.9
arahy.Tifrunner.gnm1.ann1.RB3Z54 Arachis hypogaea HOM05D004001 ORTHO05D004559 2.8e-89 334.3 531 44.3
DCAR_006876 Daucus carota HOM05D004001 ORTHO05D004559 1.8e-88 331.6 416 53.1
DCAR_006877 Daucus carota HOM05D004001 ORTHO05D004559 2.2e-86 324.7 460 47.4
unitig_31.g34038 Utricularia gibba HOM05D004001 ORTHO05D004559 4.6e-84 317.0 614 38.8
arahy.Tifrunner.gnm1.ann1.5M5P73 Arachis hypogaea HOM05D004001 ORTHO05D004559 7.4e-82 309.7 400 49.8
VMungo1383G1498 Vigna mungo HOM05D004001 ORTHO05D004559 1.3e-81 308.9 392 54.3
AagrBONN_evm.TU.Sc2ySwM_362.1643 Anthoceros agrestis HOM05D004001 ORTHO05D004559 5.5e-69 266.9 527 35.7
SalBow3G1117 Salvia bowleyana HOM05D004001 ORTHO05D004559 4.4e-66 257.3 245 55.1
Actinidia33460 Actinidia chinensis HOM05D004001 ORTHO05D004559 2.3e-59 235.0 178 66.9
Mapoly0005s0201 Marchantia polymorpha HOM05D004001 ORTHO05D004559 7.7e-55 219.9 599 31.9
vmacro13387 Vaccinium macrocarpon HOM05D004001 ORTHO05D004559 9.2e-48 196.4 179 57.5
Oeu005774.1 Olea europaea HOM05D004001 ORTHO05D004559 9.5e-45 186.4 214 59.8
VMungo1383G3044 Vigna mungo HOM05D004001 ORTHO05D004559 1.4e-43 182.6 140 62.1
Pp3c5_28010 Physcomitrium patens HOM05D004001 ORTHO05D004559 8.9e-43 179.9 378 33.1
arahy.Tifrunner.gnm1.ann1.K6PBMX Arachis hypogaea HOM05D004001 ORTHO05D004559 1.2e-34 152.9 142 61.3
arahy.Tifrunner.gnm1.ann1.DK59KL Arachis hypogaea HOM05D004001 ORTHO05D004559 2.6e-34 151.8 141 61.7
Mapoly0048s0074 Marchantia polymorpha HOM05D004001 ORTHO05D004559 3.4e-34 151.4 244 41.8
SEGI_21780 Sequoiadendron giganteum HOM05D004001 ORTHO05D004559 2.2e-33 148.7 630 31.9
arahy.Tifrunner.gnm1.ann1.LXQN6Z Arachis hypogaea HOM05D004001 ORTHO05D004559 3.9e-30 137.9 228 43.9
CBR_g40168 Chara braunii HOM05D004001 ORTHO05D004559 1.6e-28 132.5 631 23.6
Rhsim07G0026800 Rhododendron simsii HOM05D004001 ORTHO05D004559 1.4e-27 129.4 248 41.9
arahy.Tifrunner.gnm1.ann1.FJEF2G Arachis hypogaea HOM05D004001 ORTHO05D004559 1.8e-27 129.0 186 48.9
Cpa.g.sc18.133 Carica papaya HOM05D004001 ORTHO05D004559 8.9e-27 126.7 244 42.2
Hma1.2p1_1793F.1_g302640 Hydrangea macrophylla HOM05D004001 ORTHO05D004559 9.8e-26 123.2 136 52.2
Hma1.2p1_1793F.1_g302630 Hydrangea macrophylla HOM05D004001 ORTHO05D004559 4.1e-24 117.9 99 58.6
Hma1.2p1_3528F.1_g336625 Hydrangea macrophylla HOM05D004001 ORTHO05D004559 4.1e-24 117.9 99 58.6
arahy.Tifrunner.gnm1.ann1.Q8AXKZ Arachis hypogaea HOM05D005562 ORTHO05D007785 7.6e-18 97.1 182 41.2
TWI56G0444 Tripterygium wilfordii HOM05D004001 ORTHO05D004559 4.9e-17 94.4 162 38.9
arahy.Tifrunner.gnm1.ann1.73J9IG Arachis hypogaea HOM05D004001 ORTHO05D004559 2.1e-15 89.0 85 63.5
arahy.Tifrunner.gnm1.ann1.7YWS89 Arachis hypogaea HOM05D004001 ORTHO05D004559 6.0e-15 87.4 306 28.1
EL10Ac2g04735 Beta vulgaris HOM05D002948 ORTHO05D003577 8.6e-14 83.6 120 44.2
TWI56G1146 Tripterygium wilfordii HOM05D004001 ORTHO05D004559 1.5e-13 82.8 169 37.3
TWI56G0921 Tripterygium wilfordii HOM05D004001 ORTHO05D004559 1.9e-13 82.4 176 37.5
TWI56G1317 Tripterygium wilfordii HOM05D004001 ORTHO05D004559 1.9e-13 82.4 176 37.5
TWI56G0254 Tripterygium wilfordii HOM05D004001 ORTHO05D004559 3.6e-12 78.2 173 37.0
TWI56G1263 Tripterygium wilfordii HOM05D004001 ORTHO05D004559 3.6e-12 78.2 173 37.0
arahy.Tifrunner.gnm1.ann1.63QVJR Arachis hypogaea HOM05D004001 ORTHO05D004559 4.7e-12 77.8 212 32.5
SMO147G0240 Selaginella moellendorffii HOM05D004001 ORTHO05D004559 4.7e-12 77.8 305 28.9
arahy.Tifrunner.gnm1.ann1.2V3ERI Arachis hypogaea HOM05D004001 ORTHO05D004559 2.4e-11 75.5 212 32.1
Dinv00152 Davidia involucrata HOM05D026811 ORTHO05D004559 6.8e-11 73.9 55 69.1
Dinv00153 Davidia involucrata HOM05D004001 ORTHO05D004559 6.8e-11 73.9 56 67.9
Psat6g122920 Pisum sativum HOM05D004001 ORTHO05D004559 1.5e-10 72.8 46 76.1
Dinv00151 Davidia involucrata HOM05D026811 ORTHO05D004559 3.4e-10 71.6 52 69.2
vmacro22718 Vaccinium macrocarpon HOM05D004001 ORTHO05D004559 3.4e-10 71.6 65 61.5
arahy.Tifrunner.gnm1.ann1.8SNI53 Arachis hypogaea HOM05D004001 ORTHO05D004559 9.9e-10 70.1 41 87.8
Hma1.2p1_3528F.1_g336630 Hydrangea macrophylla HOM05D004001 ORTHO05D004559 1.1e-08 66.6 52 63.5
BcaC07g37285 Brassica carinata HOM05D025803 ORTHO05D027242 3.2e-08 65.1 42 73.8
arahy.Tifrunner.gnm1.ann1.Y88425 Arachis hypogaea HOM05D004001 ORTHO05D004559 1.6e-07 62.8 50 62.0
arahy.Tifrunner.gnm1.ann1.8X1DD2 Arachis hypogaea HOM05D004001 ORTHO05D004559 3.5e-07 61.6 96 41.7
Cpa.g.sc18.136 Carica papaya HOM05D004001 ORTHO05D004559 6.0e-07 60.8 71 50.7
Oeu005773.1 Olea europaea HOM05D004001 ORTHO05D004559 2.3e-06 58.9 89 42.7
arahy.Tifrunner.gnm1.ann1.GD98VG Arachis hypogaea HOM05D004001 ORTHO05D004559 6.6e-06 57.4 57 59.6
Zm00001eb243030 Zea mays HOM05D006198 ORTHO05D008226 6.6e-06 57.4 57 47.4
Zm00001eb373810 Zea mays HOM05D006198 ORTHO05D008226 6.6e-06 57.4 57 47.4


User provided reference genes

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