Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.014G071200 Populus trichocarpa HOM05D003683 ORTHO05D004143 4.8e-55 217.6 113 100.0
Potri.002G149600 Populus trichocarpa HOM05D003683 ORTHO05D004143 6.3e-39 164.1 113 79.6
Sabra02G0118400 Salix brachista HOM05D003683 ORTHO05D004143 2.9e-28 128.6 114 64.9
Cfa001703 Carpinus fangiana HOM05D003683 ORTHO05D004143 2.7e-21 105.5 108 62.0
Dinv32390 Davidia involucrata HOM05D003683 ORTHO05D004143 4.6e-21 104.8 114 58.8
Manes.01G264900 Manihot esculenta HOM05D003683 ORTHO05D004143 1.3e-20 103.2 110 59.1
Dinv43725 Davidia involucrata HOM05D003683 ORTHO05D004143 1.1e-19 100.1 114 56.1
COL.COLO4_12571 Corchorus olitorius HOM05D003683 ORTHO05D004143 1.9e-19 99.4 110 56.4
Duzib133G0707 Durio zibethinus HOM05D003683 ORTHO05D004143 5.6e-19 97.8 86 65.1
Prupe.2G147300 Prunus persica HOM05D003683 ORTHO05D004143 9.5e-19 97.1 104 57.7
Hma1.2p1_3528F.1_g336600 Hydrangea macrophylla HOM05D003683 ORTHO05D004143 1.1e-17 93.6 97 59.8
RcHm_v2.0_Chr1g0350821 Rosa chinensis HOM05D003683 ORTHO05D004143 1.4e-17 93.2 102 58.8
CiPaw.01G260700 Carya illinoinensis HOM05D003683 ORTHO05D004143 4.0e-17 91.7 105 59.0
Thecc.01G374500 Theobroma cacao HOM05D003683 ORTHO05D004143 4.0e-17 91.7 100 57.0
Lj3g0025203 Lotus japonicus HOM05D003683 ORTHO05D004143 2.0e-16 89.4 107 56.1
Gohir.A11G081600 Gossypium hirsutum HOM05D003683 ORTHO05D004143 4.4e-16 88.2 86 61.6
Gohir.D11G086200 Gossypium hirsutum HOM05D003683 ORTHO05D004143 7.5e-16 87.4 86 61.6
TWI23G1078 Tripterygium wilfordii HOM05D003683 ORTHO05D004143 9.8e-16 87.0 109 53.2
FAN01G1734 Fragaria x ananassa HOM05D003683 ORTHO05D004143 2.2e-15 85.9 99 55.6
FAN10G4272 Fragaria x ananassa HOM05D003683 ORTHO05D004143 2.2e-15 85.9 99 56.6
FvH4_7g12070 Fragaria vesca HOM05D003683 ORTHO05D004143 3.7e-15 85.1 99 56.6
FAN06G0493 Fragaria x ananassa HOM05D003683 ORTHO05D004143 3.7e-15 85.1 99 56.6
FAN06G2934 Fragaria x ananassa HOM05D003683 ORTHO05D004143 3.7e-15 85.1 99 56.6
Hma1.2p1_1793F.1_g302590 Hydrangea macrophylla HOM05D003683 ORTHO05D004143 3.7e-15 85.1 95 60.0
Lalb_Chr03g0039121 Lupinus albus HOM05D003683 ORTHO05D004143 4.9e-15 84.7 116 50.9
Aqoxy7G00590 Aquilegia oxysepala HOM05D003683 ORTHO05D004143 8.3e-15 84.0 102 52.9
Cfa012041 Carpinus fangiana HOM05D003683 ORTHO05D004143 2.4e-14 82.4 86 57.0
CiPaw.02G166400 Carya illinoinensis HOM05D003683 ORTHO05D004143 2.4e-14 82.4 90 56.7
CAN.G630.45 Capsicum annuum HOM05D003683 ORTHO05D004143 3.2e-14 82.0 100 51.0
Haze_09035 Corylus avellana HOM05D003683 ORTHO05D004143 4.1e-14 81.6 86 57.0
MD02G1201500 Malus domestica HOM05D003683 ORTHO05D004143 5.4e-14 81.3 98 55.1
Phvul.008G075300 Phaseolus vulgaris HOM05D003683 ORTHO05D004143 5.4e-14 81.3 104 54.8
Glyma.18G221800 Glycine max HOM05D003683 ORTHO05D004143 7.0e-14 80.9 97 53.6
VMungo1383G1500 Vigna mungo HOM05D003683 ORTHO05D004143 9.2e-14 80.5 104 54.8
Duzib138G1197 Durio zibethinus HOM05D003683 ORTHO05D004143 1.6e-13 79.7 112 48.2
Lj2A204T52 Lonicera japonica HOM05D003683 ORTHO05D004143 1.6e-13 79.7 104 50.0
Sed0003331 Sechium edule HOM05D003683 ORTHO05D004143 2.0e-13 79.3 107 53.3
CSS0021060 Camellia sinensis var. sinensis HOM05D003683 ORTHO05D004143 3.5e-13 78.6 98 49.0
ClCG05G002130 Citrullus lanatus HOM05D003683 ORTHO05D004143 4.6e-13 78.2 84 58.3
Lsat_1_v5_gn_4_37980 Lactuca sativa HOM05D003683 ORTHO05D004143 4.6e-13 78.2 106 47.2
Phvul.010G085600 Phaseolus vulgaris HOM05D003683 ORTHO05D004143 6.0e-13 77.8 101 49.5
Dinv39058 Davidia involucrata HOM05D003683 ORTHO05D004143 7.8e-13 77.4 80 57.5
FAN10G1839 Fragaria x ananassa HOM05D003683 ORTHO05D004143 7.8e-13 77.4 101 53.5
GSVIVG01027629001 Vitis vinifera HOM05D003683 ORTHO05D004143 1.0e-12 77.0 111 49.5
CSS0019244 Camellia sinensis var. sinensis HOM05D003683 ORTHO05D004143 1.3e-12 76.6 98 50.0
Sopen08g028050 Solanum pennellii HOM05D003683 ORTHO05D004143 1.3e-12 76.6 85 52.9
Solyc08g079690.4 Solanum lycopersicum HOM05D003683 ORTHO05D004143 2.3e-12 75.9 85 52.9
PGSC0003DMG400003921 Solanum tuberosum HOM05D003683 ORTHO05D004143 2.3e-12 75.9 87 54.0
TAR375G1063 Trochodendron aralioides HOM05D003683 ORTHO05D004143 2.3e-12 75.9 95 52.6
MD07G1124000 Malus domestica HOM05D003683 ORTHO05D004143 3.9e-12 75.1 96 54.2
TAR629G3017 Trochodendron aralioides HOM05D003683 ORTHO05D004143 3.9e-12 75.1 97 49.5
Glyma.03G022200 Glycine max HOM05D003683 ORTHO05D004143 5.0e-12 74.7 106 46.2
QL12p015617 Quercus lobata HOM05D003683 ORTHO05D004143 8.6e-12 73.9 98 50.0
vmacro00217 Vaccinium macrocarpon HOM05D003683 ORTHO05D004143 1.1e-11 73.6 107 47.7
Gohir.A03G010200 Gossypium hirsutum HOM05D003683 ORTHO05D004143 1.5e-11 73.2 89 49.4
Lsat_1_v5_gn_6_10220 Lactuca sativa HOM05D003683 ORTHO05D004143 1.5e-11 73.2 101 49.5
Peaxi162Scf00021g00139 Petunia axillaris HOM05D003683 ORTHO05D004143 1.5e-11 73.2 99 50.5
TAR629G0669 Trochodendron aralioides HOM05D003683 ORTHO05D004143 1.5e-11 73.2 105 48.6
CsaV3_3G009560 Cucumis sativus L. HOM05D003683 ORTHO05D004143 1.9e-11 72.8 84 57.1
Nn4g26435 Nelumbo nucifera HOM05D003683 ORTHO05D004143 1.9e-11 72.8 92 54.3
Glyma.09G268100 Glycine max HOM05D003683 ORTHO05D004143 3.3e-11 72.0 107 50.5
Actinidia14483 Actinidia chinensis HOM05D003683 ORTHO05D004143 4.3e-11 71.6 101 48.5
Gohir.D03G159600 Gossypium hirsutum HOM05D003683 ORTHO05D004143 4.3e-11 71.6 89 48.3
Gorai.003G167900 Gossypium raimondii HOM05D003683 ORTHO05D004143 4.3e-11 71.6 89 48.3
MELO3C006178.2 Cucumis melo HOM05D003683 ORTHO05D004143 5.6e-11 71.2 84 56.0
GSVIVG01019925001 Vitis vinifera HOM05D003683 ORTHO05D004143 5.6e-11 71.2 74 56.8
Thhalv10001694m.g Eutrema salsugineum HOM05D003683 ORTHO05D004143 1.2e-10 70.1 74 56.8
Gohir.A12G102100 Gossypium hirsutum HOM05D003683 ORTHO05D004143 1.2e-10 70.1 84 57.1
Hma1.2p1_0138F.1_g062970 Hydrangea macrophylla HOM05D003683 ORTHO05D004143 1.6e-10 69.7 90 52.2
Medtr7g075120 Medicago truncatula HOM05D003683 ORTHO05D004143 1.6e-10 69.7 76 55.3
Gorai.008G114600 Gossypium raimondii HOM05D003683 ORTHO05D004143 2.1e-10 69.3 86 57.0
HanXRQChr16g0521651 Helianthus annuus HOM05D003683 ORTHO05D004143 2.8e-10 68.9 83 49.4
HanXRQChr17g0557021 Helianthus annuus HOM05D003683 ORTHO05D004143 2.8e-10 68.9 96 46.9
Oeu056803.1 Olea europaea HOM05D003683 ORTHO05D004143 2.8e-10 68.9 91 49.5
Oeu064712.1 Olea europaea HOM05D003683 ORTHO05D004143 3.6e-10 68.6 94 50.0
Sabra01G0087900 Salix brachista HOM05D003683 ORTHO05D004143 3.6e-10 68.6 45 75.6
Dinv37740 Davidia involucrata HOM05D003683 ORTHO05D004143 4.7e-10 68.2 90 51.1
ECA233G3941 Erigeron canadensis HOM05D003683 ORTHO05D004143 4.7e-10 68.2 80 51.2
Peaxi162Scf00102g01336 Petunia axillaris HOM05D003683 ORTHO05D004143 6.2e-10 67.8 98 48.0
BcaC02g12206 Brassica carinata HOM05D003683 ORTHO05D004143 8.1e-10 67.4 71 56.3
C04p06420 Brassica napus HOM05D003683 ORTHO05D004143 8.1e-10 67.4 71 56.3
BolC4t22265H Brassica oleracea HOM05D003683 ORTHO05D004143 8.1e-10 67.4 71 56.3
A05p05480 Brassica napus HOM05D003683 ORTHO05D004143 1.1e-09 67.0 70 57.1
BraA05t19518Z Brassica rapa HOM05D003683 ORTHO05D004143 1.1e-09 67.0 70 57.1
DCAR_008443 Daucus carota HOM05D003683 ORTHO05D004143 1.1e-09 67.0 98 44.9
Potri.003G117200 Populus trichocarpa HOM05D003683 ORTHO05D004143 1.4e-09 66.6 77 54.5
Rhsim11G0007500 Rhododendron simsii HOM05D003683 ORTHO05D004143 1.4e-09 66.6 99 46.5
COL.COLO4_23839 Corchorus olitorius HOM05D003683 ORTHO05D004143 1.8e-09 66.2 88 47.7
Solyc01g091490.3 Solanum lycopersicum HOM05D003683 ORTHO05D004143 1.8e-09 66.2 88 52.3
Sopen08g003530 Solanum pennellii HOM05D003683 ORTHO05D004143 1.8e-09 66.2 85 51.8
PGSC0003DMG400012487 Solanum tuberosum HOM05D003683 ORTHO05D004143 3.1e-09 65.5 86 53.5
BcaB02g08997 Brassica carinata HOM05D003683 ORTHO05D004143 5.2e-09 64.7 71 54.9
BcaC01g05122 Brassica carinata HOM05D003683 ORTHO05D004143 5.2e-09 64.7 73 54.8
BcaC01g05135 Brassica carinata HOM05D003683 ORTHO05D004143 5.2e-09 64.7 73 54.8
C03p30100 Brassica napus HOM05D003683 ORTHO05D004143 5.2e-09 64.7 73 54.8
CARHR140640 Cardamine hirsuta HOM05D003683 ORTHO05D004143 5.2e-09 64.7 71 56.3
Gohir.A12G222400 Gossypium hirsutum HOM05D003683 ORTHO05D004143 5.2e-09 64.7 98 43.9
Gorai.007G092100 Gossypium raimondii HOM05D003683 ORTHO05D004143 5.2e-09 64.7 86 51.2
Nitab4.5_0000439g0100 Nicotiana tabacum HOM05D003683 ORTHO05D004143 5.2e-09 64.7 100 42.0
Hund11555 Selenicereus undatus HOM05D003683 ORTHO05D004143 5.2e-09 64.7 104 46.2
Atru.chr9.1472 Acer truncatum HOM05D003683 ORTHO05D004143 6.8e-09 64.3 104 46.2
BcaB02g08986 Brassica carinata HOM05D003683 ORTHO05D004143 6.8e-09 64.3 72 54.2
A03p25230 Brassica napus HOM05D003683 ORTHO05D004143 6.8e-09 64.3 73 54.8
CiPaw.11G145300 Carya illinoinensis HOM05D003683 ORTHO05D004143 6.8e-09 64.3 98 45.9
CsaV3_5G003580 Cucumis sativus L. HOM05D003683 ORTHO05D004143 6.8e-09 64.3 78 51.3
Gohir.D12G105300 Gossypium hirsutum HOM05D003683 ORTHO05D004143 6.8e-09 64.3 87 54.0
CiPaw.12G102800 Carya illinoinensis HOM05D003683 ORTHO05D004143 8.9e-09 63.9 98 44.9
MELO3C005596.2 Cucumis melo HOM05D003683 ORTHO05D004143 8.9e-09 63.9 78 52.6
Manes.01G071300 Manihot esculenta HOM05D003683 ORTHO05D004143 8.9e-09 63.9 99 46.5
Sp4g27480 Schrenkiella parvula HOM05D003683 ORTHO05D004143 8.9e-09 63.9 71 54.9
Glyma.01G144700 Glycine max HOM05D003683 ORTHO05D004143 1.2e-08 63.5 106 44.3
Nitab4.5_0006122g0030 Nicotiana tabacum HOM05D003683 ORTHO05D004143 1.2e-08 63.5 100 43.0
BcaB01g03267 Brassica carinata HOM05D003683 ORTHO05D004143 1.5e-08 63.2 73 53.4
A04p33850 Brassica napus HOM05D003683 ORTHO05D004143 1.5e-08 63.2 70 54.3
BraA04t18845Z Brassica rapa HOM05D003683 ORTHO05D004143 1.5e-08 63.2 70 54.3
AUR62017361 Chenopodium quinoa HOM05D003683 ORTHO05D004143 1.5e-08 63.2 98 45.9
Manes.05G044050 Manihot esculenta HOM05D003683 ORTHO05D004143 1.5e-08 63.2 45 73.3
Sabra03G0081600 Salix brachista HOM05D003683 ORTHO05D004143 1.5e-08 63.2 91 47.3
CARHR171270 Cardamine hirsuta HOM05D003683 ORTHO05D004143 2.0e-08 62.8 72 55.6
Gorai.008G241000 Gossypium raimondii HOM05D003683 ORTHO05D004143 2.0e-08 62.8 98 43.9
Thecc.03G264300 Theobroma cacao HOM05D003683 ORTHO05D004143 2.0e-08 62.8 93 45.2
Cc02_g36550 Coffea canephora HOM05D003683 ORTHO05D004143 2.6e-08 62.4 86 47.7
Eucgr.E00491 Eucalyptus grandis HOM05D003683 ORTHO05D004143 2.6e-08 62.4 83 47.0
MBI04_g32262_MAGBIO Magnolia biondii HOM05D003683 ORTHO05D004143 2.6e-08 62.4 107 42.1
AL4G44620 Arabidopsis lyrata HOM05D003683 ORTHO05D004143 3.4e-08 62.0 71 54.9
Gohir.D12G224900 Gossypium hirsutum HOM05D003683 ORTHO05D004143 3.4e-08 62.0 47 70.2
Manes.02G031900 Manihot esculenta HOM05D003683 ORTHO05D004143 4.4e-08 61.6 70 54.3
AUR62010534 Chenopodium quinoa HOM05D003683 ORTHO05D004143 5.8e-08 61.2 98 43.9
TWI60G0451 Tripterygium wilfordii HOM05D003683 ORTHO05D004143 5.8e-08 61.2 98 45.9
ATR0820G297 Amborella trichopoda HOM05D003360 ORTHO05D003759 7.5e-08 60.8 47 68.1
Cc08_g13490 Coffea canephora HOM05D003683 ORTHO05D004143 9.9e-08 60.5 84 48.8
PGSC0003DMG400012753 Solanum tuberosum HOM05D003683 ORTHO05D004143 9.9e-08 60.5 112 44.6
AT2G45450 Arabidopsis thaliana HOM05D003683 ORTHO05D004143 1.3e-07 60.1 76 50.0
MSTRG.13795 Avicennia marina HOM05D003683 ORTHO05D004143 1.3e-07 60.1 70 51.4
EL10Ac5g12652 Beta vulgaris HOM05D003683 ORTHO05D004143 1.3e-07 60.1 98 45.9
BcaB02g07396 Brassica carinata HOM05D003683 ORTHO05D004143 1.3e-07 60.1 74 51.4
Carub.0004s2806 Capsella rubella HOM05D003683 ORTHO05D004143 1.3e-07 60.1 77 53.2
BcaC02g07091 Brassica carinata HOM05D003683 ORTHO05D004143 1.7e-07 59.7 65 53.8
C04p71580 Brassica napus HOM05D003683 ORTHO05D004143 1.7e-07 59.7 65 53.8
BolC4t28663H Brassica oleracea HOM05D003683 ORTHO05D004143 1.7e-07 59.7 65 53.8
Sed0002184 Sechium edule HOM05D003683 ORTHO05D004143 1.7e-07 59.7 79 50.6
BcaB06g29422 Brassica carinata HOM05D003683 ORTHO05D004143 2.9e-07 58.9 65 55.4
Cpa.g.sc29.63 Carica papaya HOM05D003683 ORTHO05D004143 2.9e-07 58.9 41 73.2
ClCG01G003480 Citrullus lanatus HOM05D003683 ORTHO05D004143 2.9e-07 58.9 78 48.7
A04p01350 Brassica napus HOM05D003683 ORTHO05D004143 3.7e-07 58.5 72 48.6
Ciclev10023705m.g Citrus clementina HOM05D003683 ORTHO05D004143 3.7e-07 58.5 101 43.6
AT3G60890 Arabidopsis thaliana HOM05D003683 ORTHO05D004143 4.9e-07 58.2 72 54.2
Carub.0005s2764 Capsella rubella HOM05D003683 ORTHO05D004143 4.9e-07 58.2 81 48.1
Migut.E01009 Erythranthe guttata HOM05D003683 ORTHO05D004143 4.9e-07 58.2 78 51.3
SalBow6G6235 Salvia bowleyana HOM05D003683 ORTHO05D004143 4.9e-07 58.2 69 53.6
Sed0004645 Sechium edule HOM05D003683 ORTHO05D004143 4.9e-07 58.2 78 46.2
HanXRQChr09g0246651 Helianthus annuus HOM05D003683 ORTHO05D004143 6.4e-07 57.8 99 41.4
BcaC02g10196 Brassica carinata HOM05D003683 ORTHO05D004143 1.1e-06 57.0 72 48.6
PGR042G1830 Punica granatum HOM05D003683 ORTHO05D004143 1.1e-06 57.0 74 50.0
Hund14673 Selenicereus undatus HOM05D003683 ORTHO05D004143 1.1e-06 57.0 73 52.1
Aa31LG1G26950 Aethionema arabicum HOM05D003683 ORTHO05D004143 1.4e-06 56.6 70 48.6
AL5G43210 Arabidopsis lyrata HOM05D003683 ORTHO05D004143 1.9e-06 56.2 87 47.1
CDE02G3545 Ceratophyllum demersum HOM05D003683 ORTHO05D004143 1.9e-06 56.2 66 54.5
Sp5g02360 Schrenkiella parvula HOM05D003683 ORTHO05D004143 1.9e-06 56.2 82 47.6
Lj1g0021851 Lotus japonicus HOM05D003683 ORTHO05D004143 2.4e-06 55.8 112 42.9
Potri.001G114900 Populus trichocarpa HOM05D003683 ORTHO05D004143 2.4e-06 55.8 77 49.4
BcaB01g00341 Brassica carinata HOM05D003360 ORTHO05D003759 3.2e-06 55.5 57 54.4
C04p31700 Brassica napus HOM05D003683 ORTHO05D004143 3.2e-06 55.5 46 60.9
DCAR_008565 Daucus carota HOM05D003683 ORTHO05D004143 3.2e-06 55.5 59 55.9
Sed0005281 Sechium edule HOM05D003683 ORTHO05D004143 3.2e-06 55.5 91 42.9
BolC4t24719H Brassica oleracea HOM05D003683 ORTHO05D004143 4.1e-06 55.1 43 62.8
BraA04t15855Z Brassica rapa HOM05D003683 ORTHO05D004143 4.1e-06 55.1 43 62.8
Thhalv10006309m.g Eutrema salsugineum HOM05D003683 ORTHO05D004143 4.1e-06 55.1 81 45.7
Lsat_1_v5_gn_2_24580 Lactuca sativa HOM05D003360 ORTHO05D003759 9.2e-06 53.9 44 70.5
PGR031G2056 Punica granatum HOM05D003683 ORTHO05D004143 9.2e-06 53.9 92 46.7


User provided reference genes

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