Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Potri.014G070200 Populus trichocarpa HOM05D004961 ORTHO05D006258 0.0e+00 1289.6 639 100.0
Sabra14G0049800 Salix brachista HOM05D004961 ORTHO05D006258 0.0e+00 1223.4 639 93.3
Manes.05G044700 Manihot esculenta HOM05D004961 ORTHO05D006258 0.0e+00 1078.9 639 84.4
Thecc.01G375500 Theobroma cacao HOM05D004961 ORTHO05D006258 1.1e-292 1009.6 653 76.9
Cfa001712 Carpinus fangiana HOM05D004961 ORTHO05D006258 1.1e-284 983.0 655 75.3
COL.COLO4_12554 Corchorus olitorius HOM05D004961 ORTHO05D006258 4.1e-284 981.1 654 76.8
Haze_16810 Corylus avellana HOM05D004961 ORTHO05D006258 4.5e-283 977.6 655 75.0
Gorai.004G041000 Gossypium raimondii HOM05D004961 ORTHO05D006258 1.7e-282 975.7 640 75.0
Gohir.D08G042400 Gossypium hirsutum HOM05D004961 ORTHO05D006258 2.9e-282 974.9 640 75.0
Gohir.A08G031300 Gossypium hirsutum HOM05D004961 ORTHO05D006258 1.2e-280 969.5 639 75.1
TWI59G0003 Tripterygium wilfordii HOM05D004961 ORTHO05D006258 3.0e-279 964.9 660 72.9
TWI14G0737 Tripterygium wilfordii HOM05D004961 ORTHO05D006258 6.7e-279 963.8 650 74.0
Duzib133G1444 Durio zibethinus HOM05D004961 ORTHO05D006258 2.0e-278 962.2 655 73.9
Gohir.A11G081100 Gossypium hirsutum HOM05D004961 ORTHO05D006258 2.6e-278 961.8 649 74.4
Gorai.007G091500 Gossypium raimondii HOM05D004961 ORTHO05D006258 2.6e-278 961.8 649 74.7
Gohir.D11G085600 Gossypium hirsutum HOM05D004961 ORTHO05D006258 1.7e-277 959.1 649 74.4
Ciclev10019247m.g Citrus clementina HOM05D004961 ORTHO05D006258 2.8e-277 958.4 657 73.8
CiPaw.02G167000 Carya illinoinensis HOM05D004961 ORTHO05D006258 5.9e-275 950.7 649 75.7
FAN10G1405 Fragaria x ananassa HOM05D004961 ORTHO05D006258 1.9e-273 945.7 658 72.6
FAN01G0106 Fragaria x ananassa HOM05D004961 ORTHO05D006258 1.0e-271 939.9 644 73.0
QL08p052244 Quercus lobata HOM05D004961 ORTHO05D006258 1.0e-271 939.9 655 74.2
FvH4_7g11970 Fragaria vesca HOM05D004961 ORTHO05D006258 2.3e-271 938.7 654 72.5
FAN06G1099 Fragaria x ananassa HOM05D004961 ORTHO05D006258 6.7e-271 937.2 654 72.3
FAN06G1287 Fragaria x ananassa HOM05D004961 ORTHO05D006258 2.0e-270 935.6 649 73.0
Atru.chr5.317 Acer truncatum HOM05D004961 ORTHO05D006258 4.4e-270 934.5 547 82.4
CiPaw.01G261500 Carya illinoinensis HOM05D004961 ORTHO05D006258 9.7e-270 933.3 661 70.8
FAN10G1351 Fragaria x ananassa HOM05D004961 ORTHO05D006258 1.7e-269 932.6 645 72.9
FAN03G2819 Fragaria x ananassa HOM05D004961 ORTHO05D006258 3.7e-269 931.4 654 72.2
RcHm_v2.0_Chr1g0350691 Rosa chinensis HOM05D004961 ORTHO05D006258 8.2e-269 930.2 657 73.2
CANSAT56G2246 Cannabis sativa HOM05D004961 ORTHO05D006258 2.7e-267 925.2 652 71.6
MD07G1123000 Malus domestica HOM05D004961 ORTHO05D006258 1.3e-266 922.9 653 71.5
PGR031G0429 Punica granatum HOM05D004961 ORTHO05D006258 3.8e-266 921.4 645 73.0
Thhalv10005830m.g Eutrema salsugineum HOM05D004961 ORTHO05D006258 4.2e-265 917.9 649 71.0
MD02G1203100 Malus domestica HOM05D004961 ORTHO05D006258 5.5e-265 917.5 657 72.3
vmacro13395 Vaccinium macrocarpon HOM05D004961 ORTHO05D006258 5.5e-265 917.5 648 71.1
CSS0024555 Camellia sinensis var. sinensis HOM05D004961 ORTHO05D006258 7.2e-265 917.1 654 73.2
Prupe.2G146400 Prunus persica HOM05D004961 ORTHO05D006258 1.6e-264 916.0 646 73.5
CARHR171240 Cardamine hirsuta HOM05D004961 ORTHO05D006258 2.0e-262 909.1 657 70.5
Sp5g02400 Schrenkiella parvula HOM05D004961 ORTHO05D006258 3.4e-262 908.3 651 70.0
Aa31LG10G15080 Aethionema arabicum HOM05D004961 ORTHO05D006258 7.5e-262 907.1 657 70.8
Lalb_Chr13g0291711 Lupinus albus HOM05D004961 ORTHO05D006258 3.7e-261 904.8 616 71.8
Ca_23848_v3 Cicer arietinum L. HOM05D004961 ORTHO05D006258 3.1e-260 901.7 607 73.3
THA.LOC104802441 Tarenaya hassleriana HOM05D004961 ORTHO05D006258 2.7e-259 898.7 660 69.8
Medtr8g036115 Medicago truncatula HOM05D004961 ORTHO05D006258 7.7e-259 897.1 641 69.9
MELO3C006184.2 Cucumis melo HOM05D004961 ORTHO05D006258 2.2e-258 895.6 643 69.5
CsaV3_3G009640 Cucumis sativus L. HOM05D004961 ORTHO05D006258 2.2e-258 895.6 643 69.5
Sed0003746 Sechium edule HOM05D004961 ORTHO05D006258 1.6e-256 889.4 650 69.2
Rhsim07G0027200 Rhododendron simsii HOM05D004961 ORTHO05D006258 4.7e-256 887.9 606 71.1
TAR629G2710 Trochodendron aralioides HOM05D004961 ORTHO05D006258 1.4e-255 886.3 557 77.0
arahy.Tifrunner.gnm1.ann1.T4E2VP Arachis hypogaea HOM05D004961 ORTHO05D006258 5.2e-255 884.4 558 76.0
arahy.Tifrunner.gnm1.ann1.0VBM10 Arachis hypogaea HOM05D004961 ORTHO05D006258 8.8e-255 883.6 555 76.2
Lj3g0023798 Lotus japonicus HOM05D004961 ORTHO05D006258 1.2e-254 883.2 634 71.6
Nn4g26417 Nelumbo nucifera HOM05D004961 ORTHO05D006258 4.4e-254 881.3 554 74.7
Dinv43717 Davidia involucrata HOM05D004961 ORTHO05D006258 7.5e-254 880.6 636 72.6
Hma1.2p1_0033F.1_g021010 Hydrangea macrophylla HOM05D004961 ORTHO05D006258 2.8e-253 878.6 661 70.0
AL5G43170 Arabidopsis lyrata HOM05D004961 ORTHO05D006258 4.9e-253 877.9 658 69.0
Hma1.2p1_2294F.1_g319110 Hydrangea macrophylla HOM05D004961 ORTHO05D006258 4.9e-253 877.9 661 70.0
TPR.G21740 Trifolium pratense HOM05D004961 ORTHO05D006258 1.1e-252 876.7 653 68.6
SalBow5G3969 Salvia bowleyana HOM05D004961 ORTHO05D006258 7.0e-252 874.0 655 68.2
SalBow5G5559 Salvia bowleyana HOM05D004961 ORTHO05D006258 7.0e-252 874.0 655 68.2
Lj9P570T30 Lonicera japonica HOM05D004961 ORTHO05D006258 3.5e-251 871.7 526 79.5
TAR375G0417 Trochodendron aralioides HOM05D004961 ORTHO05D006258 1.7e-250 869.4 555 75.1
Actinidia12261 Actinidia chinensis HOM05D004961 ORTHO05D006258 5.0e-250 867.8 629 70.6
Aqoxy7G00605 Aquilegia oxysepala HOM05D004961 ORTHO05D006258 2.5e-249 865.5 548 74.1
Cc02_g36640 Coffea canephora HOM05D004961 ORTHO05D006258 1.8e-247 859.4 553 73.8
CSS0035955 Camellia sinensis var. sinensis HOM05D004961 ORTHO05D006258 1.2e-246 856.7 671 66.3
Carub.0005s2761 Capsella rubella HOM05D004961 ORTHO05D006258 5.7e-246 854.4 667 65.5
A09p53100 Brassica napus HOM05D004961 ORTHO05D006258 1.3e-245 853.2 651 67.9
AT3G60850 Arabidopsis thaliana HOM05D004961 ORTHO05D006258 6.4e-245 850.9 651 68.0
BraA09t40736Z Brassica rapa HOM05D004961 ORTHO05D006258 2.4e-244 849.0 651 67.7
Psat4g195520 Pisum sativum HOM05D004961 ORTHO05D006258 5.4e-244 847.8 536 76.3
BcaC07g40605 Brassica carinata HOM05D004961 ORTHO05D006258 7.0e-244 847.4 654 67.7
BcaC07g42645 Brassica carinata HOM05D004961 ORTHO05D006258 7.0e-244 847.4 663 67.6
C08p35800 Brassica napus HOM05D004961 ORTHO05D006258 7.0e-244 847.4 654 67.7
BolC8t51170H Brassica oleracea HOM05D004961 ORTHO05D006258 7.0e-244 847.4 654 67.7
Phvul.010G084800 Phaseolus vulgaris HOM05D004961 ORTHO05D006258 3.5e-243 845.1 563 73.0
SHI25769 Sapria himalayana HOM05D004961 ORTHO05D006258 1.3e-242 843.2 624 66.5
VMungo0331G0268 Vigna mungo HOM05D004961 ORTHO05D006258 8.6e-242 840.5 563 73.0
Sed0025415 Sechium edule HOM05D004961 ORTHO05D006258 1.5e-241 839.7 602 70.4
Nitab4.5_0000457g0390 Nicotiana tabacum HOM05D004961 ORTHO05D006258 8.0e-240 833.9 547 72.9
Nitab4.5_0005372g0040 Nicotiana tabacum HOM05D004961 ORTHO05D006258 4.4e-238 828.2 547 72.6
MBI12_g27776_MAGBIO Magnolia biondii HOM05D004961 ORTHO05D006258 9.8e-238 827.0 642 66.2
PSO478G4809 Papaver somniferum HOM05D004961 ORTHO05D006258 1.7e-237 826.2 552 71.4
Glyma.01G143700 Glycine max HOM05D004961 ORTHO05D006258 4.9e-237 824.7 611 68.1
AUR62004223 Chenopodium quinoa HOM05D004961 ORTHO05D006258 6.4e-237 824.3 570 71.1
Lalb_Chr07g0189751 Lupinus albus HOM05D004961 ORTHO05D006258 7.0e-236 820.8 645 65.7
CAN.G388.8 Capsicum annuum HOM05D004961 ORTHO05D006258 1.7e-234 816.2 543 71.6
Glyma.03G023401 Glycine max HOM05D004961 ORTHO05D006258 1.5e-233 813.1 667 64.9
Sopen01g037160 Solanum pennellii HOM05D004961 ORTHO05D006258 9.5e-233 810.4 547 70.7
Solyc01g091390.2 Solanum lycopersicum HOM05D004961 ORTHO05D006258 1.2e-232 810.1 547 70.9
Migut.B01640 Erythranthe guttata HOM05D004961 ORTHO05D006258 1.1e-231 807.0 669 63.4
PSO782G4206 Papaver somniferum HOM05D004961 ORTHO05D006258 1.1e-231 807.0 552 70.1
Ah.05g174990 Amaranthus hybridus HOM05D004961 ORTHO05D006258 1.8e-231 806.2 548 71.2
EL10Ac1g00903 Beta vulgaris HOM05D004961 ORTHO05D006258 2.3e-231 805.8 549 71.0
PGSC0003DMG400012758 Solanum tuberosum HOM05D004961 ORTHO05D006258 5.2e-231 804.7 545 70.5
DCAR_025114 Daucus carota HOM05D004961 ORTHO05D006258 9.8e-230 800.4 611 66.0
Sc26g0001210 Simmondsia chinensis HOM05D004961 ORTHO05D006258 2.9e-229 798.9 545 70.5
ECA236G4958 Erigeron canadensis HOM05D004961 ORTHO05D006258 1.9e-228 796.2 637 63.6
BcaC08g45088 Brassica carinata HOM05D004961 ORTHO05D006258 5.4e-228 794.7 661 64.9
C06p26950 Brassica napus HOM05D004961 ORTHO05D006258 5.4e-228 794.7 661 64.9
BolC6t37869H Brassica oleracea HOM05D004961 ORTHO05D006258 5.4e-228 794.7 661 64.9
Nn4g26286 Nelumbo nucifera HOM05D004961 ORTHO05D006258 1.6e-224 783.1 519 71.9
ATR0810G227 Amborella trichopoda HOM05D004961 ORTHO05D006258 3.4e-222 775.4 555 68.5
A07p25240 Brassica napus HOM05D004961 ORTHO05D006258 1.3e-221 773.5 656 63.9
AUR62013625 Chenopodium quinoa HOM05D004961 ORTHO05D006258 2.2e-221 772.7 529 71.6
Migut.N01639 Erythranthe guttata HOM05D004961 ORTHO05D006258 2.9e-221 772.3 663 62.0
SGA_v2.0_scaffold11G05589 Striga asiatica HOM05D004961 ORTHO05D006258 4.6e-219 765.0 661 60.5
Peaxi162Scf00021g01613 Petunia axillaris HOM05D004961 ORTHO05D006258 1.0e-218 763.8 616 63.8
BraA07t30166Z Brassica rapa HOM05D004961 ORTHO05D006258 1.8e-215 753.1 655 62.7
ECA234G3702 Erigeron canadensis HOM05D004961 ORTHO05D006258 1.1e-212 743.8 649 59.0
HanXRQChr03g0093851 Helianthus annuus HOM05D004961 ORTHO05D006258 3.2e-212 742.3 641 62.6
Lsat_1_v5_gn_7_7241 Lactuca sativa HOM05D004961 ORTHO05D006258 1.6e-211 740.0 536 72.2
HanXRQChr09g0245711 Helianthus annuus HOM05D004961 ORTHO05D006258 8.7e-210 734.2 555 65.4
HanXRQChr06g0169541 Helianthus annuus HOM05D004961 ORTHO05D006258 1.1e-209 733.8 513 71.7
Oeu005782.1 Olea europaea HOM05D004961 ORTHO05D006258 1.9e-204 716.5 655 57.9
CDE02G2832 Ceratophyllum demersum HOM05D004961 ORTHO05D006258 2.1e-200 703.0 601 60.4
Oeu037913.2 Olea europaea HOM05D004961 ORTHO05D006258 2.9e-197 692.6 652 57.7
SEGI_19190 Sequoiadendron giganteum HOM05D004961 ORTHO05D006258 6.9e-191 671.4 572 61.4
HPP92_025672 Vanilla planifolia HOM05D004961 ORTHO05D006258 7.6e-190 667.9 578 61.2
HanXRQChr16g0519241 Helianthus annuus HOM05D004961 ORTHO05D006258 1.9e-177 626.7 647 54.1
GSVIVG01027619001 Vitis vinifera HOM05D004961 ORTHO05D006258 8.2e-176 621.3 500 68.8
Oeu003482.1 Olea europaea HOM05D004961 ORTHO05D006258 1.8e-175 620.2 659 52.7
unitig_8.g3388 Utricularia gibba HOM05D004961 ORTHO05D006258 8.5e-173 611.3 422 70.1
Os03g0247100 Oryza sativa ssp. japonica HOM05D004961 ORTHO05D006258 1.1e-172 610.9 590 55.4
CDE11G0257 Ceratophyllum demersum HOM05D004961 ORTHO05D006258 4.4e-169 599.0 509 61.9
Zm00001eb398630 Zea mays HOM05D004961 ORTHO05D006258 2.1e-155 553.5 540 53.7
ATR0582G166 Amborella trichopoda HOM05D004961 ORTHO05D006258 1.4e-151 540.8 549 51.5
Eucgr.D02450 Eucalyptus grandis HOM05D004961 ORTHO05D006258 8.0e-147 525.0 335 73.1
unitig_22.g6802 Utricularia gibba HOM05D004961 ORTHO05D006258 3.0e-146 523.1 417 65.0
SMO164G0066 Selaginella moellendorffii HOM05D004961 ORTHO05D006258 1.4e-130 471.1 381 60.6
SMO358G0144 Selaginella moellendorffii HOM05D004961 ORTHO05D006258 2.7e-126 456.8 384 58.1
Nn1g01213 Nelumbo nucifera HOM05D004961 ORTHO05D006258 1.6e-115 421.0 292 68.2
BcaB02g07397 Brassica carinata HOM05D004961 ORTHO05D006258 1.5e-97 361.3 348 57.2
Cpa.g.sc18.116 Carica papaya HOM05D004961 ORTHO05D006258 7.6e-81 305.8 641 34.9
SGA_v2.0_scaffold43G16471 Striga asiatica HOM05D004961 ORTHO05D006258 4.2e-79 300.1 629 32.9
BcaC07g40606 Brassica carinata HOM05D003135 ORTHO05D003715 7.4e-76 289.3 407 44.0
unitig_22.g6801 Utricularia gibba HOM05D004961 ORTHO05D006258 8.8e-61 239.2 212 57.5
BcaC07g40608 Brassica carinata HOM05D003135 ORTHO05D006258 2.0e-52 211.5 164 65.9
Zm00001eb010600 Zea mays HOM05D004961 ORTHO05D006258 4.1e-42 177.2 158 55.1
SMO115G0102 Selaginella moellendorffii HOM05D004961 ORTHO05D037335 2.8e-35 154.5 321 32.4
BcaNung07139 Brassica carinata HOM05D004961 ORTHO05D006258 5.2e-29 133.7 93 73.1
BcaNung07137 Brassica carinata HOM05D004961 ORTHO05D006258 8.3e-27 126.3 76 76.3
HanXRQChr16g0519231 Helianthus annuus HOM05D004961 ORTHO05D006258 1.1e-23 115.9 101 59.4
BcaNung07135 Brassica carinata HOM05D004961 ORTHO05D006258 1.0e-21 109.4 197 39.6
MELO3C015747.2 Cucumis melo HOM05D004961 ORTHO05D044953 6.3e-19 100.1 126 50.0
BcaC07g40607 Brassica carinata HOM05D003135 ORTHO05D023343 2.7e-09 68.2 38 81.6
HanXRQChr12g0366651 Helianthus annuus HOM05D001845 ORTHO05D001878 1.0e-08 66.2 58 62.1
unitig_8.g3389 Utricularia gibba HOM05D004961 ORTHO05D006258 1.7e-08 65.5 137 35.0
Actinidia31413 Actinidia chinensis HOM05D004961 ORTHO05D006258 3.6e-06 57.8 36 72.2


User provided reference genes

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